Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 2.5e-78 295.4 155 100.0
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 3.9e-47 191.8 154 64.3
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.5e-46 189.9 155 62.6
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 3.3e-46 188.7 154 63.0
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 4.3e-46 188.3 155 65.2
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 5.6e-46 188.0 153 62.1
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 7.3e-46 187.6 155 63.2
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 6.2e-45 184.5 155 61.3
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.4e-44 183.3 155 61.3
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 2.4e-44 182.6 154 60.4
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 3.1e-44 182.2 153 60.1
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 5.3e-44 181.4 155 60.0
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 6.9e-44 181.0 154 61.7
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 9.0e-44 180.6 155 61.3
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.2e-43 180.3 154 62.3
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.5e-43 179.9 154 61.0
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 2.0e-43 179.5 155 59.4
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 2.6e-43 179.1 147 59.9
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 4.4e-43 178.3 156 59.6
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 5.8e-43 177.9 157 59.9
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.8e-43 177.9 153 60.1
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 7.6e-43 177.6 154 63.0
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 9.9e-43 177.2 147 61.2
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 9.9e-43 177.2 147 61.2
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 9.9e-43 177.2 155 58.7
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 1.7e-42 176.4 149 60.4
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 1.7e-42 176.4 147 60.5
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 2.2e-42 176.0 154 61.0
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 2.9e-42 175.6 160 60.0
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 3.8e-42 175.3 149 59.1
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 1.1e-41 173.7 147 58.5
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 1.4e-41 173.3 159 61.0
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.4e-41 173.3 153 60.1
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 5.4e-41 171.4 153 58.8
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 1.2e-40 170.2 146 61.0
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.6e-40 169.9 185 51.9
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.6e-40 169.9 149 61.7
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.5e-40 168.7 153 55.6
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 3.5e-40 168.7 151 57.6
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 4.6e-40 168.3 154 55.2
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.0e-39 167.2 156 56.4
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.0e-39 165.6 156 55.8
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 3.0e-39 165.6 153 54.9
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 3.9e-39 165.2 149 57.0
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 5.1e-39 164.9 153 54.9
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 5.1e-39 164.9 149 58.4
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 5.1e-39 164.9 114 79.8
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 8.7e-39 164.1 153 58.8
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 8.7e-39 164.1 149 57.0
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 2.5e-38 162.5 155 54.2
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 7.3e-38 161.0 154 56.5
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 9.6e-38 160.6 156 54.5
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 1.6e-37 159.8 153 54.9
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 1.6e-37 159.8 153 54.2
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 2.1e-37 159.5 134 61.2
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.8e-37 159.1 154 53.2
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.8e-37 159.1 155 54.8
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 6.2e-37 157.9 151 55.6
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 8.1e-37 157.5 153 52.9
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 1.1e-36 157.1 164 53.0
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 1.8e-36 156.4 155 51.6
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 5.3e-36 154.8 150 55.3
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 6.9e-36 154.5 153 52.9
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 6.9e-36 154.5 150 56.7
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.2e-35 153.7 153 52.9
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.5e-35 153.3 149 53.0
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 3.4e-35 152.1 149 51.7
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.4e-35 152.1 154 53.9
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 5.8e-35 151.4 154 53.9
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 1.3e-34 150.2 153 49.7
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.3e-34 150.2 147 55.8
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.3e-34 150.2 149 52.3
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 2.2e-34 149.4 149 50.3
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 2.2e-34 149.4 149 50.3
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 6.4e-34 147.9 147 51.0
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 6.4e-34 147.9 154 52.6
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 1.4e-33 146.7 132 57.6
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.4e-33 146.7 155 49.0
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.4e-33 146.7 153 52.3
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.4e-33 146.0 149 53.0
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 3.2e-33 145.6 152 48.0
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 3.2e-33 145.6 155 50.3
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 4.2e-33 145.2 136 55.1
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 5.4e-33 144.8 155 51.6
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 7.1e-33 144.4 156 50.0
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 7.1e-33 144.4 155 51.0
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 7.1e-33 144.4 145 53.8
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 9.3e-33 144.1 154 53.9
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 1.6e-32 143.3 149 49.0
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 3.5e-32 142.1 157 48.4
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 3.5e-32 142.1 157 48.4
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 3.5e-32 142.1 159 50.9
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 1.0e-31 140.6 156 50.6
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.0e-31 140.6 154 48.1
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 2.3e-31 139.4 147 46.9
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 3.0e-31 139.0 132 55.3
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 1.1e-30 137.1 135 54.8
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 1.5e-30 136.7 145 47.6
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 3.3e-30 135.6 166 47.6
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 5.6e-30 134.8 136 52.2
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 5.6e-30 134.8 136 52.2
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 3.7e-29 132.1 152 45.4
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 3.7e-29 132.1 151 49.0
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 6.2e-29 131.3 149 46.3
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 1.4e-28 130.2 149 45.6
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 1.4e-28 130.2 153 51.0
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 2.4e-28 129.4 121 56.2
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 3.1e-28 129.0 145 47.6
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 4.0e-28 128.6 149 45.6
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.0e-28 128.6 112 56.2
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 5.3e-28 128.3 111 56.8
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 6.9e-28 127.9 145 50.3
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 9.0e-28 127.5 145 44.8
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 3.4e-27 125.6 145 46.2
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 1.0e-26 124.0 156 47.4
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 1.3e-26 123.6 149 49.7
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 2.9e-26 122.5 158 46.8
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.2e-25 118.6 136 47.1
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 5.5e-25 118.2 115 51.3
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.5e-25 118.2 144 45.8
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.5e-24 115.5 143 45.5
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 1.0e-23 114.0 149 43.6
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.3e-23 113.6 196 37.8
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.3e-23 113.6 189 40.2
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 3.0e-23 112.5 77 70.1
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 3.9e-23 112.1 91 60.4
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 1.5e-22 110.2 142 44.4
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 5.7e-22 108.2 196 37.8
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 1.8e-20 103.2 145 40.7
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.5e-19 100.1 254 31.5
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.1e-17 94.0 68 58.8
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.9e-17 93.2 86 61.6
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.6e-16 90.1 88 59.1
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 1.6e-16 90.1 114 52.6
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 7.9e-16 87.8 78 60.3
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.8e-15 86.7 160 36.2
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 2.3e-15 86.3 89 56.2
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 5.7e-14 81.6 85 52.9
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 9.7e-14 80.9 90 51.1
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 9.7e-14 80.9 82 59.8
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.8e-13 79.3 78 53.8
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 6.3e-13 78.2 78 53.8
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.4e-12 77.0 111 45.9
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 3.1e-12 75.9 60 55.0
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 1.5e-11 73.6 129 38.8
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 1.0e-10 70.9 124 37.1
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.4e-09 67.0 146 36.3
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.2e-09 65.5 52 71.2
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 2.7e-08 62.8 61 57.4
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 2.5e-06 56.2 81 44.4
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 2.5e-06 56.2 77 45.5


User provided reference genes

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