Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0767 Trochodendron aralioides HOM05D003405 ORTHO05D003920 1.1e-40 169.5 84 100.0
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 3.3e-24 114.8 59 93.2
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 3.1e-22 108.2 59 89.8
QL06p035199 Quercus lobata HOM05D003405 ORTHO05D003920 4.0e-22 107.8 62 85.5
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.2e-21 106.3 59 88.1
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.2e-21 106.3 59 88.1
Dinv40394 Davidia involucrata HOM05D003405 ORTHO05D003920 2.0e-21 105.5 62 82.3
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 2.6e-21 105.1 59 88.1
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 2.6e-21 105.1 59 88.1
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 2.6e-21 105.1 59 83.1
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 2.6e-21 105.1 59 83.1
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 4.4e-21 104.4 59 84.7
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 4.4e-21 104.4 59 86.4
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 4.4e-21 104.4 59 86.4
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 4.4e-21 104.4 59 86.4
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 5.8e-21 104.0 59 83.1
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 5.8e-21 104.0 59 86.4
Potri.007G019601 Populus trichocarpa HOM05D003405 ORTHO05D003920 7.5e-21 103.6 62 82.3
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 7.5e-21 103.6 59 84.7
Potri.007G019833 Populus trichocarpa HOM05D003405 ORTHO05D003920 9.9e-21 103.2 62 82.3
FAN19G0435 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.3e-20 102.8 62 80.6
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 1.3e-20 102.8 59 81.4
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 1.3e-20 102.8 59 81.4
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 1.3e-20 102.8 59 81.4
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 1.3e-20 102.8 62 80.6
Haze_21718 Corylus avellana HOM05D003405 ORTHO05D003920 1.7e-20 102.4 59 83.1
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 1.7e-20 102.4 59 84.7
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 1.7e-20 102.4 59 83.1
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 1.7e-20 102.4 59 84.7
FAN23G2718 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.7e-20 102.4 59 84.7
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.7e-20 102.4 59 84.7
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 1.7e-20 102.4 59 84.7
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 2.9e-20 101.7 59 84.7
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 2.9e-20 101.7 59 83.1
Rhsim05G0047900 Rhododendron simsii HOM05D003405 ORTHO05D003920 2.9e-20 101.7 60 80.0
RhsimUnG0142200 Rhododendron simsii HOM05D003405 ORTHO05D003920 2.9e-20 101.7 60 80.0
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 3.7e-20 101.3 59 83.1
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 3.7e-20 101.3 59 79.7
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 4.9e-20 100.9 59 83.1
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 4.9e-20 100.9 59 81.4
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 4.9e-20 100.9 59 83.1
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 4.9e-20 100.9 58 82.8
Thecc.01G131300 Theobroma cacao HOM05D003405 ORTHO05D003920 4.9e-20 100.9 59 81.4
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 6.4e-20 100.5 59 83.1
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 4.1e-19 97.8 59 79.7
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 5.4e-19 97.4 59 76.3
Hma1.2p1_0083F.1_g042700 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 7.1e-19 97.1 59 78.0
Atru.chr1.1031 Acer truncatum HOM05D003405 ORTHO05D003920 2.1e-18 95.5 59 79.7
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 2.1e-18 95.5 60 78.3
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 2.1e-18 95.5 59 79.7
SEGI_38491 Sequoiadendron giganteum HOM05D003405 ORTHO05D003920 2.1e-18 95.5 59 76.3
CDE02G2548 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 3.5e-18 94.7 59 78.0
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 3.5e-18 94.7 59 78.0
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 6.0e-18 94.0 59 78.0
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 6.0e-18 94.0 59 78.0
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 7.8e-18 93.6 59 78.0
CDE09G0427 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 1.0e-17 93.2 59 78.0
Thecc.09G077300 Theobroma cacao HOM05D003405 ORTHO05D003920 1.0e-17 93.2 69 63.8
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 1.7e-17 92.4 59 78.0
CDE09G0650 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 3.9e-17 91.3 59 74.6
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 1.1e-16 89.7 59 74.6
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 1.5e-16 89.4 59 72.9
SGA_v2.0_scaffold80G25931 Striga asiatica HOM05D003405 ORTHO05D003920 1.9e-16 89.0 59 71.2
Nitab4.5_0001652g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 3.3e-16 88.2 59 71.2
Nitab4.5_0004347g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 3.3e-16 88.2 59 71.2
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 3.3e-16 88.2 59 74.6
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 4.3e-16 87.8 59 71.2
Nitab4.5_0000401g0230 Nicotiana tabacum HOM05D003405 ORTHO05D003920 4.3e-16 87.8 59 69.5
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 5.6e-16 87.4 59 72.9
Peaxi162Scf00047g00219 Petunia axillaris HOM05D003405 ORTHO05D003920 5.6e-16 87.4 59 69.5
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 5.6e-16 87.4 59 69.5
ECA240G1009 Erigeron canadensis HOM05D003405 ORTHO05D003920 1.2e-15 86.3 59 66.1
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 1.2e-15 86.3 59 72.9
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 1.6e-15 85.9 59 72.9
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 2.1e-15 85.5 59 69.5
VMungo0647G2029 Vigna mungo HOM05D003405 ORTHO05D003920 4.7e-15 84.3 60 73.3
AUR62033117 Chenopodium quinoa HOM05D003405 ORTHO05D003920 6.2e-15 84.0 59 67.8
arahy.Tifrunner.gnm1.ann1.1Z7RSE Arachis hypogaea HOM05D003405 ORTHO05D003920 8.1e-15 83.6 65 66.2
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 8.1e-15 83.6 59 69.5
Nitab4.5_0003101g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.1e-14 83.2 58 65.5
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 1.1e-14 83.2 72 58.3
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 1.4e-14 82.8 49 81.6
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 1.8e-14 82.4 49 79.6
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 1.8e-14 82.4 59 67.8
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 1.8e-14 82.4 62 67.7
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 2.4e-14 82.0 59 69.5
Cc04_g14810 Coffea canephora HOM05D003405 ORTHO05D003920 2.4e-14 82.0 59 67.8
PSO832G1536 Papaver somniferum HOM05D003405 ORTHO05D003920 2.4e-14 82.0 60 66.7
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 2.4e-14 82.0 78 55.1
Aqoxy2G03536 Aquilegia oxysepala HOM05D003405 ORTHO05D003920 3.1e-14 81.6 47 83.0
ATR0693G254 Amborella trichopoda HOM05D003405 ORTHO05D003920 4.0e-14 81.3 49 81.6
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 4.0e-14 81.3 59 66.1
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 4.0e-14 81.3 59 66.1
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 4.0e-14 81.3 59 66.1
Lsat_1_v5_gn_5_59220 Lactuca sativa HOM05D003405 ORTHO05D003920 5.2e-14 80.9 50 74.0
arahy.Tifrunner.gnm1.ann1.AGQ12H Arachis hypogaea HOM05D003405 ORTHO05D003920 6.8e-14 80.5 58 67.2
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 6.8e-14 80.5 49 79.6
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 8.9e-14 80.1 57 70.2
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 8.9e-14 80.1 58 67.2
HanXRQChr13g0411651 Helianthus annuus HOM05D003405 ORTHO05D003920 1.2e-13 79.7 56 69.6
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 1.5e-13 79.3 59 67.8
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 1.5e-13 79.3 59 67.8
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 1.5e-13 79.3 61 68.9
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 1.5e-13 79.3 61 67.2
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 1.5e-13 79.3 61 68.9
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 1.5e-13 79.3 61 68.9
BcaC01g00579 Brassica carinata HOM05D003405 ORTHO05D003920 2.6e-13 78.6 61 68.9
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 2.6e-13 78.6 61 68.9
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 2.6e-13 78.6 61 68.9
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 3.4e-13 78.2 61 67.2
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 4.4e-13 77.8 58 67.2
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 4.4e-13 77.8 61 67.2
C03p81570 Brassica napus HOM05D003405 ORTHO05D003920 4.4e-13 77.8 61 68.9
BolC3t20427H Brassica oleracea HOM05D003405 ORTHO05D003920 4.4e-13 77.8 61 68.9
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 4.4e-13 77.8 61 67.2
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 5.8e-13 77.4 61 67.2
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 5.8e-13 77.4 59 66.1
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 5.8e-13 77.4 59 62.7
arahy.Tifrunner.gnm1.ann1.Q3GRJ7 Arachis hypogaea HOM05D003405 ORTHO05D003920 7.6e-13 77.0 60 65.0
Os01g0924300 Oryza sativa ssp. japonica HOM05D003405 ORTHO05D003920 7.6e-13 77.0 59 64.4
CARHR225780 Cardamine hirsuta HOM05D003405 ORTHO05D003920 9.9e-13 76.6 61 67.2
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 1.7e-12 75.9 61 65.6
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 4.9e-12 74.3 49 71.4
AT4G18900 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 1.1e-11 73.2 59 64.4
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 1.9e-11 72.4 59 64.4
Zm00001eb142980 Zea mays HOM05D003405 ORTHO05D003920 1.9e-11 72.4 59 62.7
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 2.4e-11 72.0 61 65.6
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 2.4e-11 72.0 49 69.4
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 3.2e-11 71.6 61 60.7
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 4.1e-11 71.2 59 64.4
C03p81560 Brassica napus HOM05D003405 ORTHO05D003920 1.6e-10 69.3 59 64.4
BolC3t20426H Brassica oleracea HOM05D003405 ORTHO05D003920 1.6e-10 69.3 59 64.4
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 2.1e-10 68.9 63 58.7
ClCG06G014970 Citrullus lanatus HOM05D003405 ORTHO05D003920 3.5e-10 68.2 49 69.4
Oeu047246.2 Olea europaea HOM05D003405 ORTHO05D003920 3.5e-10 68.2 49 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2786 Anthoceros agrestis HOM05D003405 ORTHO05D003920 7.8e-10 67.0 63 57.1
BcaC01g00577 Brassica carinata HOM05D003405 ORTHO05D003920 7.8e-10 67.0 59 62.7
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 7.8e-10 67.0 59 62.7
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 1.0e-09 66.6 49 63.3
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 6.6e-09 63.9 57 56.1
SMO361G0182 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 1.9e-08 62.4 59 55.9
A01p03190 Brassica napus HOM05D003405 ORTHO05D003920 5.6e-08 60.8 51 60.8
Carub.0007s2230 Capsella rubella HOM05D003405 ORTHO05D003920 5.6e-08 60.8 58 58.6
CBR_g8571 Chara braunii HOM05D003405 ORTHO05D003920 5.6e-08 60.8 67 49.3
Actinidia06364 Actinidia chinensis HOM05D003405 ORTHO05D003920 1.2e-07 59.7 52 57.7
PSO761G0245 Papaver somniferum HOM05D003405 ORTHO05D003920 3.6e-07 58.2 37 70.3
Ca_06470_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 4.7e-07 57.8 46 60.9
Ca_21295_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 4.7e-07 57.8 59 55.9
BcaC06g30604 Brassica carinata HOM05D003405 ORTHO05D003920 1.4e-06 56.2 51 56.9
HanXRQChr03g0083001 Helianthus annuus HOM05D003405 ORTHO05D003920 2.4e-06 55.5 40 60.0
Medtr5g097870 Medicago truncatula HOM05D003405 ORTHO05D003920 3.1e-06 55.1 44 61.4
Psat2g004040 Pisum sativum HOM05D003405 ORTHO05D003920 5.2e-06 54.3 44 61.4
TPR.G15067 Trifolium pratense HOM05D003405 ORTHO05D003920 5.2e-06 54.3 44 61.4
AL7G15790 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 9.0e-06 53.5 52 55.8


User provided reference genes

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