Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 4057.7 2032 100.0
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 3254.2 2034 80.8
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2672.9 2045 68.1
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2630.5 2038 68.1
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2599.7 2027 66.6
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2489.1 2032 63.9
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2447.5 2066 62.5
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 2409.4 2038 62.7
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 2337.8 2044 60.0
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2323.5 2039 61.1
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2321.6 2040 60.7
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 2320.0 2044 59.8
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 2280.8 2050 59.2
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2278.8 2033 59.9
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2274.2 2042 59.3
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2261.1 2042 60.3
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2246.1 2038 58.1
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2234.1 2034 59.0
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2226.8 2038 59.2
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2223.0 2029 58.6
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2222.6 2034 58.7
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2218.0 2037 59.0
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2213.0 2012 59.5
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2207.2 2037 57.5
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 2205.3 2043 57.4
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2198.3 2030 58.2
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 2190.2 2077 58.2
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2188.7 2065 58.8
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2179.1 2036 56.6
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2173.3 2072 58.4
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 2169.4 2069 57.2
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2169.0 2057 56.4
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 2157.9 2068 56.7
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2142.9 2044 56.4
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 2142.1 2056 57.3
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2114.3 2061 57.4
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 2013.8 2045 54.3
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2010.0 2055 54.7
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1989.9 2044 53.4
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1973.0 2046 53.0
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1972.2 2037 52.7
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1964.1 2045 52.6
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1954.1 2036 52.5
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1950.3 2045 52.1
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1936.4 2040 52.6
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1924.8 2046 51.8
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1918.3 2045 51.9
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1907.5 2035 52.0
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1898.6 2016 53.9
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1890.9 2040 51.6
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1890.2 2037 51.6
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1880.1 2048 51.4
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1875.1 2042 51.3
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1870.9 2052 51.2
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1870.5 2047 51.5
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1864.0 2040 50.7
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1862.8 2071 51.2
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1843.6 2020 51.1
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1819.7 2037 49.8
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1814.7 2041 50.0
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1803.9 1764 57.3
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1800.8 2064 48.7
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1795.0 1954 51.1
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1780.8 1956 50.1
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1774.2 1765 56.7
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1774.2 2051 50.1
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1772.3 2034 48.4
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1760.3 1973 50.4
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1733.4 2169 46.3
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1726.8 2035 49.0
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1723.0 2038 49.5
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1723.0 2039 48.9
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1711.4 1966 49.6
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1704.5 2041 48.7
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1699.5 2045 48.4
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1697.2 2041 48.3
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1686.0 2039 48.4
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1682.9 2037 48.2
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1676.8 2046 47.1
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1670.2 2049 47.5
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1668.7 2042 47.7
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1656.0 2029 47.8
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1651.3 2039 47.4
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1651.3 1992 47.8
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1649.8 2039 47.4
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1642.1 2042 47.5
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1640.6 2042 47.5
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1637.9 2042 47.4
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1581.2 1823 48.8
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1577.4 2106 45.2
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1520.8 1493 55.5
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1499.6 1500 54.3
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1472.2 2054 43.5
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1447.2 1767 46.7
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1311.2 1735 45.5
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1295.4 2063 38.4
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1281.9 1233 56.6
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 0.0e+00 1135.9 1715 41.5
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 0.0e+00 1130.9 2136 36.0
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 3.8e-283 979.5 1516 38.3
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 2.0e-247 860.9 2195 31.5
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 5.2e-232 809.7 2142 31.1
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 2.0e-212 744.6 2038 30.0
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 4.0e-208 730.3 679 58.3
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 2.3e-184 651.4 1763 30.1
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.5e-170 605.5 1241 33.7
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.5e-162 578.9 1168 34.8
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 7.6e-159 566.6 496 61.9
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 1.9e-157 562.0 1938 26.8
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.1e-144 518.1 442 60.0
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.1e-136 491.1 398 63.8
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.6e-124 452.6 387 57.1
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 1.0e-123 449.9 337 68.2
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.4e-120 439.5 361 64.3
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 7.0e-112 410.6 277 75.5
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.0e-99 370.2 276 67.0
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 4.6e-87 328.2 518 40.3
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 7.8e-79 300.8 266 60.2
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 5.6e-77 294.7 198 71.2
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 3.9e-70 271.9 373 43.4
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.5e-66 260.0 190 65.8
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 3.0e-62 245.7 217 58.5
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 3.6e-60 238.8 180 66.7
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 9.0e-43 181.0 506 29.2
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 3.4e-42 179.1 310 39.4
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 4.2e-32 145.6 83 80.7
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-31 143.7 589 24.6
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 7.4e-29 134.8 178 48.9
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 1.3e-28 134.0 220 36.4
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 2.8e-28 132.9 389 25.2
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 2.2e-25 123.2 67 85.1
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 2.2e-25 123.2 67 85.1
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 1.4e-22 114.0 64 84.4
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 3.9e-22 112.5 279 29.4
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 2.5e-21 109.8 128 46.9
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 4.3e-21 109.0 68 76.5
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-20 106.7 135 44.4
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 6.9e-19 101.7 68 66.2
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 5.0e-17 95.5 102 52.0
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 2.3e-14 86.7 128 45.3
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 3.0e-14 86.3 56 73.2
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 7.4e-13 81.6 55 69.1
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 7.2e-08 65.1 67 58.2
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 1.0e-06 61.2 46 58.7


User provided reference genes

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