Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 3.2e-105 385.2 210 100.0
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 6.6e-82 307.8 209 81.3
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 2.0e-70 269.6 212 72.6
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 3.7e-69 265.4 211 71.1
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 3.2e-68 262.3 220 69.5
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 1.6e-67 260.0 210 69.0
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 1.6e-67 260.0 210 68.1
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 3.5e-67 258.8 211 70.1
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 4.6e-67 258.5 213 69.0
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 4.6e-67 258.5 215 69.3
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 7.8e-67 257.7 208 70.2
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 1.0e-66 257.3 212 70.8
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 2.3e-66 256.1 208 69.7
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 3.0e-66 255.8 212 70.8
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 3.9e-66 255.4 204 69.6
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 1.1e-65 253.8 200 69.0
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 1.5e-65 253.4 213 69.0
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 1.5e-65 253.4 215 69.3
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 4.3e-65 251.9 208 68.3
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 5.6e-65 251.5 210 67.1
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 8.1e-64 247.7 215 65.6
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 3.1e-63 245.7 211 68.2
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 3.1e-63 245.7 212 64.6
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 8.9e-63 244.2 210 66.2
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 1.2e-62 243.8 215 65.1
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 1.5e-62 243.4 212 64.2
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 2.0e-62 243.0 224 63.8
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 3.4e-62 242.3 210 65.7
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 5.8e-62 241.5 217 65.9
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 1.3e-61 240.4 212 66.5
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 3.8e-61 238.8 193 66.3
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 4.9e-61 238.4 211 64.0
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 6.4e-61 238.0 212 65.1
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 1.4e-60 236.9 212 64.2
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 1.9e-60 236.5 211 64.0
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 5.4e-60 235.0 210 63.8
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 7.1e-60 234.6 206 62.6
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 3.5e-59 232.3 212 64.2
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 7.8e-59 231.1 211 65.4
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.0e-58 230.7 212 62.3
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.7e-58 229.9 214 62.1
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 3.0e-58 229.2 213 63.8
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 5.1e-58 228.4 177 68.4
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 5.1e-58 228.4 177 68.4
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 8.7e-58 227.6 212 62.3
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.1e-57 227.3 214 61.7
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.5e-57 226.9 211 63.5
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 3.3e-57 225.7 211 62.6
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 5.6e-57 224.9 221 60.6
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 1.3e-56 223.8 226 58.0
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 1.3e-56 223.8 209 60.3
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 4.8e-56 221.9 174 70.1
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 8.1e-56 221.1 167 72.5
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 1.4e-55 220.3 210 62.4
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.6e-54 216.1 218 60.6
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 2.6e-54 216.1 210 60.0
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 5.8e-54 214.9 174 67.8
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 3.8e-53 212.2 169 66.9
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 6.4e-53 211.5 213 57.7
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 3.2e-52 209.1 213 59.2
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 7.1e-52 208.0 214 57.5
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 7.1e-52 208.0 213 57.7
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 1.6e-51 206.8 199 58.8
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 3.5e-51 205.7 215 56.7
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 4.6e-51 205.3 190 59.5
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.3e-50 203.8 207 58.0
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 1.7e-50 203.4 213 58.2
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 5.1e-50 201.8 213 55.4
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 8.7e-50 201.1 210 58.6
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 1.5e-49 200.3 212 56.1
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 2.5e-49 199.5 255 52.9
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 3.3e-49 199.1 213 58.2
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 4.3e-49 198.7 211 56.4
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 1.3e-48 197.2 212 56.1
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 2.8e-48 196.1 211 55.5
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 2.8e-48 196.1 213 57.3
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 9.9e-46 187.6 155 69.7
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 8.4e-45 184.5 176 55.1
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 1.4e-44 183.7 216 53.2
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 7.1e-44 181.4 205 55.6
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.2e-43 180.6 158 63.9
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 2.7e-43 179.5 212 52.8
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 4.6e-43 178.7 145 67.6
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 1.3e-42 177.2 206 53.9
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 2.3e-42 176.4 184 50.5
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.3e-42 176.4 148 64.9
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 5.1e-42 175.3 146 65.8
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 8.7e-42 174.5 201 52.7
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 1.5e-41 173.7 154 62.3
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 3.7e-40 169.1 216 50.9
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 6.2e-40 168.3 167 60.5
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 1.4e-39 167.2 154 61.0
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 4.0e-39 165.6 210 52.4
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 1.5e-38 163.7 161 57.8
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.6e-38 162.9 169 58.0
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 1.3e-37 160.6 151 60.3
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 3.8e-37 159.1 210 50.5
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 4.9e-37 158.7 218 49.5
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 6.5e-37 158.3 213 52.6
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 1.9e-36 156.8 216 52.3
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 5.5e-36 155.2 151 58.9
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 7.9e-35 151.4 175 53.1
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 5.3e-31 138.7 214 49.5
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 9.0e-31 137.9 202 40.1
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 3.8e-29 132.5 169 51.5
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 3.2e-28 129.4 213 46.0
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 6.7e-26 121.7 148 45.9
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 6.3e-24 115.2 100 69.0
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.8e-23 113.6 173 42.8
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 5.9e-22 108.6 132 53.8
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 5.5e-20 102.1 205 40.0
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 9.4e-20 101.3 101 58.4
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 5.1e-18 95.5 200 40.5
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.7e-16 90.5 88 61.4
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 6.9e-15 85.1 69 62.3
TAR636G0634 Trochodendron aralioides HOM05D006133 ORTHO05D007855 8.5e-13 78.2 103 49.5
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 4.2e-12 75.9 77 58.4
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 7.2e-12 75.1 95 48.4
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 2.3e-10 70.1 167 33.5
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 2.0e-09 67.0 167 32.9
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 5.7e-09 65.5 68 55.9
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 5.7e-09 65.5 54 64.8
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 1.4e-07 60.8 79 48.1
Zm00001eb131680 Zea mays HOM05D006133 ORTHO05D446205 1.4e-07 60.8 67 49.3
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 1.4e-07 60.8 67 49.3
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 5.3e-07 58.9 144 33.3
TAR633G2366 Trochodendron aralioides HOM05D000001 ORTHO05D000003 5.9e-06 55.5 40 65.0


User provided reference genes

Program Settings