Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 3.9e-171 604.7 316 100.0
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 5.4e-88 328.6 318 61.6
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 4.9e-65 252.3 347 49.0
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.6e-58 229.9 367 44.4
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 1.3e-57 227.6 347 46.7
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 2.2e-57 226.9 347 48.7
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 1.8e-51 207.2 364 41.5
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 2.4e-51 206.8 370 45.1
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 4.2e-48 196.1 392 38.8
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 3.3e-45 186.4 233 49.8
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 3.7e-44 183.0 240 44.6
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 1.1e-43 181.4 237 46.4
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 3.1e-43 179.9 275 48.0
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 6.9e-43 178.7 212 50.9
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 3.8e-41 172.9 327 41.3
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 7.2e-40 168.7 303 41.6
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 6.1e-39 165.6 267 44.6
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 1.1e-37 161.4 305 37.4
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 2.6e-37 160.2 283 39.6
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 5.7e-37 159.1 345 35.9
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 2.4e-35 153.7 287 38.3
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 4.1e-35 152.9 230 44.8
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 7.0e-35 152.1 247 49.4
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 1.2e-34 151.4 383 34.2
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 2.6e-34 150.2 237 41.8
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 1.0e-33 148.3 230 43.9
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 1.3e-33 147.9 272 38.6
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 1.1e-32 144.8 349 32.4
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 1.5e-32 144.4 178 50.0
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 5.5e-32 142.5 354 32.2
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 7.2e-32 142.1 243 40.7
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 7.2e-32 142.1 357 34.7
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 9.4e-32 141.7 354 31.9
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 1.2e-31 141.4 213 46.0
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.2e-31 141.4 358 34.4
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 1.6e-31 141.0 175 51.4
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 1.6e-31 141.0 344 35.8
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.0e-30 138.3 231 41.1
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 1.0e-30 138.3 297 33.3
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.4e-30 137.9 230 40.9
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 1.8e-30 137.5 304 36.5
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 2.3e-30 137.1 300 34.7
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 6.7e-30 135.6 350 34.3
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 8.8e-30 135.2 355 33.0
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 2.6e-29 133.7 117 59.8
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 4.4e-29 132.9 268 36.6
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 7.4e-29 132.1 244 43.4
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 7.4e-29 132.1 284 37.3
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 1.7e-28 131.0 371 29.9
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 2.8e-28 130.2 200 44.5
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 2.8e-28 130.2 316 31.6
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.6e-26 124.4 298 34.2
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 4.5e-26 122.9 298 33.6
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.9e-24 117.5 210 38.6
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 1.6e-23 114.4 184 39.7
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 3.6e-23 113.2 228 35.5
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 1.0e-22 111.7 246 39.4
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 5.2e-22 109.4 327 30.9
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 8.8e-22 108.6 232 37.5
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 2.6e-21 107.1 232 35.8
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 3.4e-21 106.7 317 32.8
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 5.7e-21 105.9 240 35.0
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 5.7e-21 105.9 297 31.6
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 1.7e-20 104.4 248 36.7
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 2.8e-20 103.6 230 37.0
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 1.8e-19 100.9 271 30.6
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 1.0e-17 95.1 231 35.1
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.0e-17 95.1 231 36.8
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 2.2e-17 94.0 251 32.7
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 2.9e-17 93.6 185 39.5
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 3.8e-17 93.2 285 30.5
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 3.8e-17 93.2 147 42.9
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 5.5e-16 89.4 205 37.6
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 7.2e-16 89.0 138 43.5
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 5.2e-14 82.8 240 35.8
PGR142G3672 Punica granatum HOM05D007421 ORTHO05D009203 1.2e-13 81.6 248 31.0
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 1.4e-11 74.7 117 41.9
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 3.1e-11 73.6 59 62.7
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 3.1e-11 73.6 141 34.8
arahy.Tifrunner.gnm1.ann1.LE3KL9 Arachis hypogaea HOM05D007421 ORTHO05D009203 1.6e-10 71.2 127 36.2
arahy.Tifrunner.gnm1.ann1.VL1QZD Arachis hypogaea HOM05D007421 ORTHO05D009203 1.6e-10 71.2 127 36.2
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.6e-10 71.2 38 76.3
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 1.6e-10 71.2 38 76.3
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 2.7e-10 70.5 55 58.2
Nn8g41183 Nelumbo nucifera HOM05D057912 ORTHO05D009203 2.7e-10 70.5 51 68.6
Nn8g41202 Nelumbo nucifera HOM05D057912 ORTHO05D009203 2.7e-10 70.5 51 68.6
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 5.9e-10 69.3 138 43.5
Cre03.g172800 Chlamydomonas reinhardtii HOM05D002710 ORTHO05D002905 1.0e-09 68.6 70 52.9
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 1.0e-09 68.6 38 71.1
MELO3C024933.2 Cucumis melo HOM05D007421 ORTHO05D009203 1.7e-09 67.8 72 54.2
FAN08G3106 Fragaria x ananassa HOM05D007421 ORTHO05D009203 2.9e-09 67.0 132 37.1
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 1.5e-08 64.7 33 75.8
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 2.5e-08 63.9 33 72.7
Prupe.4G263300 Prunus persica HOM05D007421 ORTHO05D009203 4.2e-08 63.2 89 49.4
RcHm_v2.0_Chr7g0236451 Rosa chinensis HOM05D007421 ORTHO05D009203 5.6e-08 62.8 55 60.0
RcHm_v2.0_Chr7g0236491 Rosa chinensis HOM05D007421 ORTHO05D009203 5.6e-08 62.8 55 60.0
RcHm_v2.0_Chr0c11g0499381 Rosa chinensis HOM05D007421 ORTHO05D009203 2.1e-07 60.8 82 47.6
Prupe.3G149200 Prunus persica HOM05D002710 ORTHO05D002905 2.8e-07 60.5 180 29.4
CiPaw.05G243800 Carya illinoinensis HOM05D002710 ORTHO05D002905 1.4e-06 58.2 33 63.6
Sed0001518 Sechium edule HOM05D002710 ORTHO05D002905 1.4e-06 58.2 33 63.6
Migut.B00639 Erythranthe guttata HOM05D007421 ORTHO05D009203 1.8e-06 57.8 77 41.6
QL01p003296 Quercus lobata HOM05D002710 ORTHO05D002905 1.8e-06 57.8 33 63.6
QL01p003323 Quercus lobata HOM05D002710 ORTHO05D002905 1.8e-06 57.8 33 63.6
QL01p003332 Quercus lobata HOM05D002710 ORTHO05D002905 1.8e-06 57.8 33 63.6
Duzib268G0186 Durio zibethinus HOM05D002710 ORTHO05D002905 2.3e-06 57.4 33 63.6
GSVIVG01011819001 Vitis vinifera HOM05D002710 ORTHO05D002905 2.3e-06 57.4 86 34.9
ATR0053G009 Amborella trichopoda HOM05D002710 ORTHO05D002905 3.0e-06 57.0 33 60.6
AagrBONN_evm.TU.Sc2ySwM_368.2304 Anthoceros agrestis HOM05D002710 ORTHO05D002905 3.0e-06 57.0 33 60.6
Cfa015825 Carpinus fangiana HOM05D002710 ORTHO05D002905 3.0e-06 57.0 33 63.6
ClCG01G005960 Citrullus lanatus HOM05D002710 ORTHO05D002905 3.0e-06 57.0 33 63.6
Haze_00668 Corylus avellana HOM05D002710 ORTHO05D002905 3.0e-06 57.0 33 63.6
MELO3C005335.2 Cucumis melo HOM05D002710 ORTHO05D002905 3.0e-06 57.0 33 63.6
CsaV3_5G028730 Cucumis sativus L. HOM05D002710 ORTHO05D002905 3.0e-06 57.0 33 63.6
Sabra10G0089300 Salix brachista HOM05D002710 ORTHO05D002905 3.0e-06 57.0 33 60.6
Sed0018266 Sechium edule HOM05D002710 ORTHO05D002905 3.0e-06 57.0 33 63.6
CDE05G0816 Ceratophyllum demersum HOM05D002710 ORTHO05D002905 4.0e-06 56.6 33 63.6
Nitab4.5_0000350g0010 Nicotiana tabacum HOM05D002710 ORTHO05D002905 4.0e-06 56.6 33 60.6
Nitab4.5_0003886g0100 Nicotiana tabacum HOM05D002710 ORTHO05D002905 4.0e-06 56.6 33 60.6
EL10Ac2g04521 Beta vulgaris HOM05D002710 ORTHO05D002905 5.2e-06 56.2 38 55.3
EL10Ac6g14280 Beta vulgaris HOM05D002710 ORTHO05D002905 5.2e-06 56.2 33 60.6
COL.COLO4_06823 Corchorus olitorius HOM05D002710 ORTHO05D002905 5.2e-06 56.2 33 60.6
Potri.010G118700 Populus trichocarpa HOM05D002710 ORTHO05D002905 5.2e-06 56.2 33 60.6
PGSC0003DMG400030567 Solanum tuberosum HOM05D002710 ORTHO05D002905 5.2e-06 56.2 33 60.6
Atru.chr11.276 Acer truncatum HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
Atru.chr11.290 Acer truncatum HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
AUR62023217 Chenopodium quinoa HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
AUR62044613 Chenopodium quinoa HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
Ciclev10015908m.g Citrus clementina HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
Duzib248G1261 Durio zibethinus HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
Gohir.A12G141300 Gossypium hirsutum HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
Gohir.D12G146200 Gossypium hirsutum HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
Gorai.008G157500 Gossypium raimondii HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
MD16G1035800 Malus domestica HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 63.6
Manes.14G108300 Manihot esculenta HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
Os05g0576300 Oryza sativa ssp. japonica HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
SalBow3G4526 Salvia bowleyana HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
Thecc.02G219500 Theobroma cacao HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
TWI79G0443 Tripterygium wilfordii HOM05D002710 ORTHO05D002905 6.8e-06 55.8 33 60.6
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 8.9e-06 55.5 56 57.1
PGR004G1595 Punica granatum HOM05D002710 ORTHO05D002905 8.9e-06 55.5 53 45.3
RcHm_v2.0_Chr4g0407541 Rosa chinensis HOM05D002710 ORTHO05D002905 8.9e-06 55.5 33 63.6
Sc11g0008490 Simmondsia chinensis HOM05D002710 ORTHO05D002905 8.9e-06 55.5 32 65.6
TAR374G0062 Trochodendron aralioides HOM05D002710 ORTHO05D002905 8.9e-06 55.5 100 33.0
HPP92_008058 Vanilla planifolia HOM05D002710 ORTHO05D002905 8.9e-06 55.5 33 60.6


User provided reference genes

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