Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0654 Trochodendron aralioides HOM05D006874 ORTHO05D008334 6.5e-216 753.8 394 100.0
Nn6g34522 Nelumbo nucifera HOM05D006874 ORTHO05D008334 8.0e-105 384.8 401 55.9
Nn5g30659 Nelumbo nucifera HOM05D006874 ORTHO05D008334 1.3e-102 377.5 397 58.7
QL12p038579 Quercus lobata HOM05D006874 ORTHO05D008334 8.6e-83 311.6 397 49.4
Dinv39206 Davidia involucrata HOM05D006874 ORTHO05D008334 3.4e-79 299.7 395 48.4
Manes.18G049200 Manihot esculenta HOM05D006874 ORTHO05D008334 1.3e-78 297.7 384 46.1
Aqoxy6G02484 Aquilegia oxysepala HOM05D006874 ORTHO05D008334 4.9e-78 295.8 407 47.7
Cfa013741 Carpinus fangiana HOM05D006874 ORTHO05D008334 1.2e-76 291.2 390 48.2
Actinidia19297 Actinidia chinensis HOM05D006874 ORTHO05D008334 4.5e-76 289.3 387 48.3
Manes.05G183400 Manihot esculenta HOM05D006874 ORTHO05D008334 1.0e-75 288.1 389 45.5
Dinv09539 Davidia involucrata HOM05D006874 ORTHO05D008334 1.4e-69 267.7 387 45.5
Duzib093G1642 Durio zibethinus HOM05D006874 ORTHO05D008334 2.4e-69 266.9 397 43.6
Thecc.08G084900 Theobroma cacao HOM05D006874 ORTHO05D008334 1.9e-66 257.3 383 42.8
MBI16_g45151_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 2.5e-66 256.9 397 44.3
Duzib116G0206 Durio zibethinus HOM05D006874 ORTHO05D008334 3.3e-66 256.5 393 43.5
Potri.014G013200 Populus trichocarpa HOM05D006874 ORTHO05D008334 4.3e-66 256.1 385 43.4
Haze_22393 Corylus avellana HOM05D006874 ORTHO05D008334 9.8e-63 245.0 391 43.7
Haze_22401 Corylus avellana HOM05D006874 ORTHO05D008334 9.8e-63 245.0 391 43.7
ATR0739G189 Amborella trichopoda HOM05D006874 ORTHO05D008334 1.3e-59 234.6 395 40.3
Sabra14G0008000 Salix brachista HOM05D006874 ORTHO05D008334 1.7e-59 234.2 379 42.2
Potri.002G115600 Populus trichocarpa HOM05D006874 ORTHO05D008334 1.1e-58 231.5 417 38.6
Eucgr.F02227 Eucalyptus grandis HOM05D006874 ORTHO05D008334 3.1e-56 223.4 382 37.7
PSO541G5864 Papaver somniferum HOM05D006874 ORTHO05D008334 3.4e-55 219.9 421 42.3
Oeu053642.1 Olea europaea HOM05D006874 ORTHO05D008334 9.9e-55 218.4 382 38.2
PSO675G5853 Papaver somniferum HOM05D006874 ORTHO05D008334 1.7e-54 217.6 425 42.4
Actinidia10219 Actinidia chinensis HOM05D006874 ORTHO05D008334 2.9e-54 216.9 384 41.1
RcHm_v2.0_Chr6g0309981 Rosa chinensis HOM05D006874 ORTHO05D008334 4.1e-53 213.0 387 40.3
vmacro21419 Vaccinium macrocarpon HOM05D006874 ORTHO05D008334 1.6e-52 211.1 392 39.5
TWI56G0226 Tripterygium wilfordii HOM05D006874 ORTHO05D008334 2.7e-52 210.3 382 39.5
MSTRG.24387 Avicennia marina HOM05D006874 ORTHO05D008334 6.6e-51 205.7 377 38.7
Ciclev10016010m.g Citrus clementina HOM05D006874 ORTHO05D008334 1.9e-50 204.1 390 37.2
Cfa004701 Carpinus fangiana HOM05D006874 ORTHO05D008334 2.5e-50 203.8 391 41.9
FAN15G0895 Fragaria x ananassa HOM05D006874 ORTHO05D008334 5.6e-50 202.6 400 40.2
TAR376G0413 Trochodendron aralioides HOM05D006874 ORTHO05D008334 7.3e-50 202.2 177 67.8
Atru.chr13.867 Acer truncatum HOM05D006874 ORTHO05D008334 9.5e-50 201.8 335 46.0
Rhsim06G0064400 Rhododendron simsii HOM05D006874 ORTHO05D008334 9.5e-50 201.8 399 39.8
CiPaw.07G172200 Carya illinoinensis HOM05D006874 ORTHO05D008334 2.1e-49 200.7 387 38.0
TAR625G1551 Trochodendron aralioides HOM05D006874 ORTHO05D008334 2.8e-49 200.3 146 71.9
FAN27G0759 Fragaria x ananassa HOM05D006874 ORTHO05D008334 1.8e-48 197.6 396 39.9
Prupe.1G419500 Prunus persica HOM05D006874 ORTHO05D008334 1.5e-47 194.5 377 38.2
FvH4_2g32690 Fragaria vesca HOM05D006874 ORTHO05D008334 2.6e-47 193.7 397 39.8
MD08G1078600 Malus domestica HOM05D006874 ORTHO05D008334 1.3e-46 191.4 394 38.1
CiPaw.06G164000 Carya illinoinensis HOM05D006874 ORTHO05D008334 2.2e-46 190.7 398 37.4
Haze_10303 Corylus avellana HOM05D006874 ORTHO05D008334 2.9e-46 190.3 378 40.7
Cc10_g07600 Coffea canephora HOM05D006874 ORTHO05D008334 6.4e-46 189.1 380 35.5
Nitab4.5_0002796g0010 Nicotiana tabacum HOM05D006874 ORTHO05D008334 1.4e-45 188.0 384 38.8
Potri.009G085500 Populus trichocarpa HOM05D006874 ORTHO05D008334 1.9e-45 187.6 383 38.4
Sabra02G0091300 Salix brachista HOM05D006874 ORTHO05D008334 1.9e-45 187.6 382 35.1
Potri.001G290000 Populus trichocarpa HOM05D006874 ORTHO05D008334 2.4e-45 187.2 381 37.5
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 4.2e-45 186.4 379 39.1
CSS0047478 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 7.1e-45 185.7 383 38.9
QL11p029345 Quercus lobata HOM05D006874 ORTHO05D008334 9.2e-45 185.3 379 37.5
CSS0007120 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 1.2e-44 184.9 383 38.9
PGR031G0049 Punica granatum HOM05D006874 ORTHO05D008334 1.6e-44 184.5 390 34.4
Gohir.D05G215200 Gossypium hirsutum HOM05D006874 ORTHO05D008334 2.7e-44 183.7 388 36.3
Dinv16069 Davidia involucrata HOM05D006874 ORTHO05D008334 4.6e-44 183.0 390 36.4
Gorai.009G221900 Gossypium raimondii HOM05D006874 ORTHO05D008334 1.0e-43 181.8 391 36.1
Gohir.A05G211900 Gossypium hirsutum HOM05D006874 ORTHO05D008334 3.3e-42 176.8 388 36.1
Actinidia00356 Actinidia chinensis HOM05D006874 ORTHO05D008334 6.2e-41 172.6 227 47.1
MBI16_g41242_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 6.2e-41 172.6 275 42.9
Hund05278 Selenicereus undatus HOM05D006874 ORTHO05D008334 6.2e-41 172.6 405 37.3
Nitab4.5_0001426g0040 Nicotiana tabacum HOM05D006874 ORTHO05D008334 1.8e-40 171.0 376 37.2
Sabra16G0181500 Salix brachista HOM05D006874 ORTHO05D008334 3.1e-40 170.2 386 36.8
PGSC0003DMG400004918 Solanum tuberosum HOM05D006874 ORTHO05D008334 9.0e-40 168.7 385 35.6
Glyma.14G089075 Glycine max HOM05D006874 ORTHO05D008334 9.9e-39 165.2 388 33.2
CANSAT25G0531 Cannabis sativa HOM05D006874 ORTHO05D008334 2.2e-38 164.1 396 33.3
Glyma.17G233100 Glycine max HOM05D006874 ORTHO05D008334 3.2e-37 160.2 388 32.2
Lalb_Chr23g0267621 Lupinus albus HOM05D006874 ORTHO05D008334 9.3e-37 158.7 391 34.8
MELO3C016836.2 Cucumis melo HOM05D006874 ORTHO05D008334 2.7e-36 157.1 383 36.6
Cpa.g.sc91.58 Carica papaya HOM05D016697 ORTHO05D018163 4.6e-36 156.4 386 30.6
Ca_15889_v3 Cicer arietinum L. HOM05D006874 ORTHO05D008334 4.6e-36 156.4 397 33.2
Medtr3g103400 Medicago truncatula HOM05D006874 ORTHO05D008334 1.0e-35 155.2 394 32.7
CSS0036555 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 2.3e-35 154.1 204 46.1
AUR62035010 Chenopodium quinoa HOM05D006874 ORTHO05D008334 3.0e-35 153.7 405 33.1
EL10Ac1g02352 Beta vulgaris HOM05D006874 ORTHO05D008334 3.9e-35 153.3 413 33.9
Migut.C00474 Erythranthe guttata HOM05D006874 ORTHO05D008334 8.7e-35 152.1 378 32.8
Solyc04g077535.1 Solanum lycopersicum HOM05D006874 ORTHO05D008334 8.7e-35 152.1 382 34.6
CsaV3_4G035240 Cucumis sativus L. HOM05D006874 ORTHO05D008334 1.1e-34 151.8 383 35.5
Sc15g0005390 Simmondsia chinensis HOM05D006874 ORTHO05D008334 1.9e-34 151.0 391 32.0
Gohir.A06G025400 Gossypium hirsutum HOM05D006874 ORTHO05D008334 3.3e-34 150.2 393 33.1
Gohir.D06G022500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 3.3e-34 150.2 392 33.2
Gorai.010G027100 Gossypium raimondii HOM05D006874 ORTHO05D008334 4.3e-34 149.8 392 33.2
AUR62037457 Chenopodium quinoa HOM05D006874 ORTHO05D008334 9.6e-34 148.7 398 32.4
TPR.G13116 Trifolium pratense HOM05D006874 ORTHO05D008334 1.3e-33 148.3 395 33.4
Sed0017147 Sechium edule HOM05D006874 ORTHO05D008334 1.6e-33 147.9 383 34.7
ClCG05G026570 Citrullus lanatus HOM05D006874 ORTHO05D008334 1.2e-31 141.7 380 32.4
Manes.07G056800 Manihot esculenta HOM05D006874 ORTHO05D008334 3.4e-31 140.2 377 31.8
SalBow7G3254 Salvia bowleyana HOM05D006874 ORTHO05D008334 7.6e-31 139.0 380 32.6
Cpa.g.sc524.2 Carica papaya HOM05D006874 ORTHO05D008334 9.9e-31 138.7 393 30.8
Phvul.001G029700 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 6.4e-30 136.0 380 29.2
Medtr1g017530 Medicago truncatula HOM05D006874 ORTHO05D008334 8.4e-30 135.6 394 31.7
RhsimUnG0041100 Rhododendron simsii HOM05D063883 ORTHO05D008334 1.1e-29 135.2 385 32.7
RhsimUnG0123100 Rhododendron simsii HOM05D063883 ORTHO05D008334 1.1e-29 135.2 385 32.7
TAR625G0319 Trochodendron aralioides HOM05D006874 ORTHO05D008334 3.2e-29 133.7 127 55.9
Glyma.06G048600 Glycine max HOM05D006874 ORTHO05D008334 1.6e-28 131.3 412 30.8
Thecc.02G119800 Theobroma cacao HOM05D016697 ORTHO05D018163 3.0e-27 127.1 389 30.6
Psat0s1031g0080 Pisum sativum HOM05D006874 ORTHO05D008334 4.3e-26 123.2 391 32.0
Psat5g037000 Pisum sativum HOM05D006874 ORTHO05D008334 1.6e-25 121.3 383 30.5
Lj1g0014879 Lotus japonicus HOM05D006874 ORTHO05D008334 4.8e-25 119.8 383 32.1
MSTRG.25026 Avicennia marina HOM05D006874 ORTHO05D008334 6.2e-25 119.4 309 33.7
FAN24G0724 Fragaria x ananassa HOM05D006874 ORTHO05D008334 6.2e-25 119.4 159 49.1
Hma1.2p1_1170F.1_g263450 Hydrangea macrophylla HOM05D006874 ORTHO05D008334 1.8e-24 117.9 114 52.6
MD15G1065400 Malus domestica HOM05D006874 ORTHO05D008334 5.3e-24 116.3 192 40.6
Phvul.009G073900 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 1.2e-23 115.2 401 28.2
Psat6g017400 Pisum sativum HOM05D006874 ORTHO05D008334 4.5e-23 113.2 385 28.6
DCAR_020062 Daucus carota HOM05D006874 ORTHO05D008334 1.7e-22 111.3 386 30.1
VMungo1309G0435 Vigna mungo HOM05D006874 ORTHO05D008334 1.7e-22 111.3 397 28.5
CDE02G2198 Ceratophyllum demersum HOM05D006874 ORTHO05D008334 2.2e-22 110.9 384 29.9
VMungo0647G0698 Vigna mungo HOM05D006874 ORTHO05D008334 1.4e-21 108.2 384 27.9
Lj5g0027457 Lotus japonicus HOM05D006874 ORTHO05D008334 4.2e-21 106.7 391 30.4
Sopen04g031160 Solanum pennellii HOM05D006874 ORTHO05D008334 2.1e-20 104.4 311 32.2
Gorai.002G136000 Gossypium raimondii HOM05D006874 ORTHO05D008334 1.3e-19 101.7 388 30.2
Gohir.A01G123500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 2.3e-19 100.9 388 29.4
SGA_v2.0_scaffold14G07085 Striga asiatica HOM05D000285 ORTHO05D000241 9.6e-18 95.5 115 45.2
COL.COLO4_32486 Corchorus olitorius HOM05D016697 ORTHO05D018163 1.3e-17 95.1 393 28.8
Lj2g0008576 Lotus japonicus HOM05D023496 ORTHO05D025628 1.3e-17 95.1 398 28.6
HPP92_019577 Vanilla planifolia HOM05D025517 ORTHO05D019338 4.8e-17 93.2 383 26.6
COL.COLO4_28465 Corchorus olitorius HOM05D006874 ORTHO05D008334 1.4e-16 91.7 186 39.2
Ciclev10030239m.g Citrus clementina HOM05D006874 ORTHO05D008334 6.5e-14 82.8 106 38.7
arahy.Tifrunner.gnm1.ann1.WJQ75P Arachis hypogaea HOM05D006874 ORTHO05D008334 2.8e-09 67.4 156 31.4
VMungo1215G3202 Vigna mungo HOM05D023496 ORTHO05D025628 6.3e-09 66.2 381 24.1
arahy.Tifrunner.gnm1.ann1.0IC8QA Arachis hypogaea HOM05D006874 ORTHO05D008334 2.4e-08 64.3 351 25.6
Migut.O00023 Erythranthe guttata HOM05D006874 ORTHO05D008334 1.5e-07 61.6 150 35.3
Glyma.11G002500 Glycine max HOM05D023496 ORTHO05D025628 1.5e-07 61.6 382 23.6
Zm00001eb052020 Zea mays HOM05D036793 ORTHO05D019338 2.0e-07 61.2 389 22.9
Ah.00g238010 Amaranthus hybridus HOM05D024306 ORTHO05D012960 3.4e-07 60.5 381 23.6
CDE01G0825 Ceratophyllum demersum HOM05D002048 ORTHO05D002146 1.7e-06 58.2 218 30.7
Gohir.A13G047850 Gossypium hirsutum HOM05D016697 ORTHO05D018163 2.2e-06 57.8 102 39.2
Gohir.D13G046200 Gossypium hirsutum HOM05D016697 ORTHO05D018163 2.2e-06 57.8 102 39.2
Gorai.013G051900 Gossypium raimondii HOM05D016697 ORTHO05D018163 2.2e-06 57.8 102 39.2
SEGI_10040 Sequoiadendron giganteum HOM05D002110 ORTHO05D001148 8.5e-06 55.8 107 31.8


User provided reference genes

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