Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0627 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.0e-103 379.0 185 100.0
TAR628G1230 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.5e-93 345.5 171 98.2
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.1e-53 213.8 109 93.6
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 1.3e-41 173.7 100 82.0
TAR633G0239 Trochodendron aralioides HOM05D002759 ORTHO05D021026 5.3e-35 151.8 80 95.0
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 1.5e-24 117.1 90 61.1
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 1.6e-23 113.6 107 58.9
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 8.0e-23 111.3 106 53.8
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 8.0e-23 111.3 105 54.3
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 1.0e-22 110.9 105 53.3
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 1.0e-22 110.9 100 56.0
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 8.8e-22 107.8 105 55.2
TAR636G1783 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.6e-21 106.3 115 55.7
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 5.7e-21 105.1 92 48.9
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 9.7e-21 104.4 92 48.9
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 1.7e-20 103.6 92 52.2
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 4.8e-20 102.1 125 43.2
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 6.3e-20 101.7 105 48.6
TAR626G1052 Trochodendron aralioides HOM05D002759 ORTHO05D021026 6.3e-20 101.7 49 95.9
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 1.8e-19 100.1 120 42.5
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 2.4e-19 99.8 112 42.9
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 3.1e-19 99.4 100 48.0
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 4.1e-19 99.0 100 47.0
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 5.3e-19 98.6 100 47.0
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 1.2e-18 97.4 106 50.0
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.2e-18 97.4 100 51.0
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 1.6e-18 97.1 100 48.0
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 1.6e-18 97.1 100 48.0
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 1.6e-18 97.1 100 45.0
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 1.6e-18 97.1 106 50.9
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 2.0e-18 96.7 120 49.2
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 5.9e-18 95.1 100 47.0
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 7.7e-18 94.7 100 47.0
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 1.0e-17 94.4 92 50.0
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 1.0e-17 94.4 105 45.7
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.0e-17 94.4 105 48.6
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 1.3e-17 94.0 100 46.0
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 1.3e-17 94.0 100 46.0
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 1.3e-17 94.0 133 42.9
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.7e-17 93.6 119 44.5
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 2.2e-17 93.2 109 43.1
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 2.2e-17 93.2 100 47.0
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 3.8e-17 92.4 100 46.0
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 5.0e-17 92.0 100 47.0
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 5.0e-17 92.0 130 38.5
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 8.5e-17 91.3 100 46.0
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 8.5e-17 91.3 100 46.0
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 8.5e-17 91.3 108 43.5
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 8.5e-17 91.3 95 48.4
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 2.5e-16 89.7 100 51.0
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 3.2e-16 89.4 100 47.0
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 7.2e-16 88.2 100 49.0
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 9.4e-16 87.8 100 44.0
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.2e-15 87.4 100 43.0
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.2e-15 87.4 100 47.0
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 1.6e-15 87.0 103 45.6
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 2.1e-15 86.7 100 46.0
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.1e-15 86.7 131 37.4
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 2.7e-15 86.3 100 49.0
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 3.6e-15 85.9 92 45.7
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.6e-15 85.9 92 45.7
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 4.7e-15 85.5 100 43.0
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 8.0e-15 84.7 105 44.8
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 1.4e-14 84.0 98 43.9
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 1.4e-14 84.0 113 41.6
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.8e-14 83.6 92 44.6
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.8e-14 83.6 100 46.0
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.8e-14 83.6 92 44.6
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.0e-14 82.8 131 36.6
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 5.2e-14 82.0 105 43.8
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 5.2e-14 82.0 100 41.0
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 8.8e-14 81.3 100 46.0
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 1.5e-13 80.5 100 47.0
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 1.5e-13 80.5 103 44.7
TAR633G1635 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.0e-13 80.1 45 82.2
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 3.4e-13 79.3 105 42.9
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 3.4e-13 79.3 100 43.0
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 3.4e-13 79.3 100 43.0
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 5.7e-13 78.6 103 43.7
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 7.5e-13 78.2 100 46.0
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 1.7e-12 77.0 94 43.6
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 4.8e-12 75.5 92 40.2
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 6.3e-12 75.1 100 38.0
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 1.8e-11 73.6 100 39.0
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 1.8e-11 73.6 100 39.0
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 3.1e-11 72.8 79 41.8
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 3.1e-11 72.8 92 41.3
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 5.4e-11 72.0 100 38.0
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 5.4e-11 72.0 100 39.0
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 7.0e-11 71.6 103 39.8
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 9.1e-11 71.2 100 39.0
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 9.1e-11 71.2 100 39.0
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.6e-10 70.5 92 39.1
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.6e-10 70.5 92 39.1
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 2.0e-10 70.1 92 40.2
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 2.7e-10 69.7 100 39.0
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 5.9e-10 68.6 92 39.1
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 1.7e-09 67.0 105 37.1
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.9e-09 66.2 92 40.2
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 2.9e-09 66.2 100 40.0
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 2.9e-09 66.2 98 39.8
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 1.1e-08 64.3 102 37.3
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 1.5e-08 63.9 100 40.0
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 1.5e-08 63.9 92 34.8
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 2.5e-08 63.2 100 39.0
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 2.5e-08 63.2 100 39.0
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 2.5e-08 63.2 100 39.0
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 2.5e-08 63.2 105 35.2
Aqoxy3G00698 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 3.2e-08 62.8 100 39.0
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 3.2e-08 62.8 100 41.0
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 9.5e-08 61.2 132 30.3
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 1.6e-07 60.5 105 33.3
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 2.1e-07 60.1 87 33.3
SHI26607 Sapria himalayana HOM05D002759 ORTHO05D003290 2.8e-07 59.7 88 37.5
CARHR222380 Cardamine hirsuta HOM05D002759 ORTHO05D003290 4.7e-07 58.9 88 38.6
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 4.7e-07 58.9 108 35.2
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 1.0e-06 57.8 92 39.1
ATR0661G443 Amborella trichopoda HOM05D002759 ORTHO05D003290 5.2e-06 55.5 135 30.4


User provided reference genes

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