Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 7.4e-116 420.6 222 100.0
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 3.0e-93 345.5 219 84.0
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 8.0e-70 267.7 218 70.2
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 1.2e-68 263.8 223 66.4
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 1.8e-66 256.5 228 64.5
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 1.2e-60 237.3 253 60.5
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 1.5e-60 236.9 231 66.2
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 1.5e-60 236.9 227 64.3
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 3.7e-59 232.3 220 63.2
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 1.1e-58 230.7 240 57.9
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 3.1e-58 229.2 200 63.5
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 2.0e-57 226.5 231 60.6
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 4.5e-57 225.3 228 59.6
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 2.9e-56 222.6 173 70.5
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 3.8e-56 222.2 231 58.4
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 8.6e-56 221.1 222 59.9
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 4.3e-55 218.8 230 57.8
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 3.0e-53 212.6 218 59.2
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 3.0e-53 212.6 238 56.3
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 4.0e-53 212.2 201 61.7
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 8.9e-53 211.1 203 62.6
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 1.5e-52 210.3 227 58.6
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 3.4e-52 209.1 222 58.1
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 4.4e-52 208.8 199 61.3
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 2.2e-51 206.5 216 57.4
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 4.9e-51 205.3 204 61.3
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 6.4e-51 204.9 173 67.6
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 8.3e-51 204.5 214 58.4
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 8.3e-51 204.5 222 56.3
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.1e-50 204.1 196 58.2
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 2.4e-50 203.0 199 59.8
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 4.1e-50 202.2 200 57.0
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 4.1e-50 202.2 197 57.4
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 5.4e-50 201.8 205 56.6
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 2.0e-49 199.9 214 57.0
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.3e-48 197.2 191 60.2
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 2.3e-48 196.4 217 53.5
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 5.0e-48 195.3 205 55.1
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 8.6e-48 194.5 213 53.5
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 3.3e-47 192.6 201 55.2
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 9.5e-47 191.0 222 54.5
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 3.6e-46 189.1 220 52.7
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 8.0e-46 188.0 203 53.7
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 1.0e-45 187.6 213 49.8
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 3.1e-45 186.0 205 54.1
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 5.2e-45 185.3 217 53.0
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 1.2e-44 184.1 220 50.5
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 1.2e-44 184.1 199 54.8
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 1.2e-44 184.1 221 51.6
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 2.6e-44 183.0 201 57.2
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 4.4e-44 182.2 219 55.7
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 7.5e-44 181.4 201 58.7
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 1.3e-43 180.6 214 51.9
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.3e-43 180.6 201 58.7
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.9e-43 179.5 204 57.8
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 2.9e-43 179.5 214 50.9
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 4.9e-43 178.7 210 51.9
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 8.3e-43 177.9 201 54.7
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 8.3e-43 177.9 209 51.2
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 8.3e-43 177.9 209 51.2
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.3e-43 177.9 204 57.4
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.4e-42 176.4 215 50.7
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 2.4e-42 176.4 209 50.2
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 2.4e-42 176.4 238 49.6
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 2.4e-42 176.4 201 55.7
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 3.2e-42 176.0 220 50.0
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.2e-42 176.0 229 53.3
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 5.4e-42 175.3 218 50.9
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 7.0e-42 174.9 216 49.1
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 9.2e-42 174.5 212 50.5
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 9.2e-42 174.5 203 52.2
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.2e-41 174.1 206 51.9
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 2.0e-41 173.3 211 52.1
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 2.7e-41 172.9 218 51.8
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 2.7e-41 172.9 227 48.0
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 4.6e-41 172.2 184 57.1
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 6.0e-41 171.8 213 50.7
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 6.0e-41 171.8 212 49.5
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 7.8e-41 171.4 217 50.7
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 1.7e-40 170.2 218 50.9
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.7e-40 170.2 213 48.8
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 2.3e-40 169.9 221 52.0
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 2.3e-40 169.9 204 54.4
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 5.0e-40 168.7 215 51.2
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 8.6e-40 167.9 193 52.8
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 1.1e-39 167.5 217 47.5
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.5e-39 167.2 212 49.1
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.5e-39 167.2 226 50.9
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 7.3e-39 164.9 222 48.2
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 7.3e-39 164.9 222 48.2
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 1.2e-38 164.1 268 43.3
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 1.2e-38 164.1 221 47.5
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 2.1e-38 163.3 221 48.9
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 2.8e-38 162.9 176 51.7
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 4.7e-38 162.2 250 44.0
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 6.2e-38 161.8 202 49.5
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.1e-37 161.0 204 51.0
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.1e-37 159.5 216 47.2
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 3.1e-37 159.5 204 52.5
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 4.0e-37 159.1 221 48.4
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 6.8e-37 158.3 204 49.5
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 6.8e-37 158.3 207 51.7
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 3.4e-36 156.0 229 45.0
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 4.4e-36 155.6 221 44.8
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 2.9e-35 152.9 223 48.0
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 2.9e-35 152.9 219 45.7
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 1.1e-34 151.0 203 49.3
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 9.2e-34 147.9 208 47.6
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 8.1e-30 134.8 223 44.4
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 2.2e-27 126.7 124 56.5
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 7.1e-26 121.7 303 35.3
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 8.9e-21 104.8 231 37.2
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 5.8e-20 102.1 188 39.9
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 9.9e-20 101.3 117 47.9
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.2e-19 100.1 118 51.7
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 2.9e-19 99.8 130 49.2
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 1.2e-17 94.4 114 50.0
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 6.0e-17 92.0 76 63.2
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 3.1e-13 79.7 139 41.0
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 7.6e-12 75.1 234 31.2
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 2.2e-11 73.6 209 30.1
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 7.9e-09 65.1 42 71.4
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.8e-08 63.9 104 45.2
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 1.8e-08 63.9 82 50.0


User provided reference genes

Program Settings