Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0605 Trochodendron aralioides HOM05D001755 ORTHO05D001665 6.3e-35 150.2 75 100.0
Dinv15987 Davidia involucrata HOM05D001755 ORTHO05D001665 1.6e-17 92.4 52 88.5
Sabra05G0120800 Salix brachista HOM05D001755 ORTHO05D001665 1.0e-16 89.7 55 76.4
CSS0016051 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 2.2e-16 88.6 54 81.5
MBI06_g42716_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 2.2e-16 88.6 43 97.7
Solyc12g087895.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 2.9e-16 88.2 69 65.2
Actinidia25389 Actinidia chinensis HOM05D001755 ORTHO05D001665 3.8e-16 87.8 58 75.9
Nitab4.5_0002025g0030 Nicotiana tabacum HOM05D001755 ORTHO05D001665 3.8e-16 87.8 48 89.6
Nitab4.5_0004381g0040 Nicotiana tabacum HOM05D001755 ORTHO05D001665 3.8e-16 87.8 48 89.6
Rhsim06G0074100 Rhododendron simsii HOM05D001755 ORTHO05D001665 3.8e-16 87.8 47 93.6
MBI02_g18287_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 1.1e-15 86.3 41 100.0
Nn5g29940 Nelumbo nucifera HOM05D001755 ORTHO05D001665 1.1e-15 86.3 41 100.0
Peaxi162Scf00160g01119 Petunia axillaris HOM05D001755 ORTHO05D001665 1.1e-15 86.3 44 93.2
TAR381G0451 Trochodendron aralioides HOM05D001755 ORTHO05D001665 1.1e-15 86.3 41 100.0
vmacro21312 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 1.1e-15 86.3 49 89.8
CiPaw.07G168100 Carya illinoinensis HOM05D001755 ORTHO05D001665 1.9e-15 85.5 41 97.6
CiPaw.08G054200 Carya illinoinensis HOM05D001755 ORTHO05D001665 1.9e-15 85.5 41 97.6
ClCG00G003730 Citrullus lanatus HOM05D001755 ORTHO05D001665 2.5e-15 85.1 41 97.6
ClCG08G011500 Citrullus lanatus HOM05D001755 ORTHO05D001665 2.5e-15 85.1 41 97.6
CsaV3_7G007020 Cucumis sativus L. HOM05D001755 ORTHO05D001665 2.5e-15 85.1 47 85.1
Dinv44836 Davidia involucrata HOM05D001755 ORTHO05D001665 2.5e-15 85.1 41 97.6
Nitab4.5_0001507g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.5e-15 85.1 44 93.2
Nitab4.5_0011953g0010 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.5e-15 85.1 44 93.2
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 3.2e-15 84.7 42 92.9
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 5.5e-15 84.0 41 97.6
CAN.G1658.7 Capsicum annuum HOM05D001755 ORTHO05D001665 5.5e-15 84.0 41 97.6
COL.COLO4_35196 Corchorus olitorius HOM05D001755 ORTHO05D001665 5.5e-15 84.0 43 93.0
Duzib041G0605 Durio zibethinus HOM05D001755 ORTHO05D001665 5.5e-15 84.0 42 92.9
MD08G1193000 Malus domestica HOM05D001755 ORTHO05D001665 5.5e-15 84.0 41 97.6
Prupe.1G527700 Prunus persica HOM05D001755 ORTHO05D001665 5.5e-15 84.0 41 97.6
Solyc04g076033.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 5.5e-15 84.0 41 97.6
vmacro04680 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 5.5e-15 84.0 42 95.2
ClCG10G009540 Citrullus lanatus HOM05D001755 ORTHO05D001665 7.2e-15 83.6 52 78.8
Gohir.D05G267450 Gossypium hirsutum HOM05D001755 ORTHO05D001665 7.2e-15 83.6 41 95.1
Gorai.010G035900 Gossypium raimondii HOM05D001755 ORTHO05D001665 7.2e-15 83.6 41 95.1
CSS0010978 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 9.4e-15 83.2 57 73.7
CSS0046975 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 9.4e-15 83.2 57 73.7
CiPaw.05G031100 Carya illinoinensis HOM05D001755 ORTHO05D001665 1.2e-14 82.8 41 95.1
Nitab4.5_0001264g0230 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.2e-14 82.8 68 63.2
Actinidia33109 Actinidia chinensis HOM05D001755 ORTHO05D001665 1.6e-14 82.4 41 95.1
Glyma.06G094800 Glycine max HOM05D001755 ORTHO05D001665 1.6e-14 82.4 42 90.5
Gohir.A05G221300 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.6e-14 82.4 41 92.7
Gohir.D05G224000 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.6e-14 82.4 41 92.7
Gorai.009G231400 Gossypium raimondii HOM05D001755 ORTHO05D001665 1.6e-14 82.4 41 92.7
Manes.18G061200 Manihot esculenta HOM05D001755 ORTHO05D001665 1.6e-14 82.4 41 95.1
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 1.6e-14 82.4 44 90.9
Potri.002G103400 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.6e-14 82.4 41 95.1
Potri.005G158000 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.6e-14 82.4 41 95.1
TPR.G18441 Trifolium pratense HOM05D001755 ORTHO05D001665 1.6e-14 82.4 48 81.2
ATR0022G040 Amborella trichopoda HOM05D001755 ORTHO05D001665 2.1e-14 82.0 41 95.1
DCAR_012866 Daucus carota HOM05D001755 ORTHO05D001665 2.1e-14 82.0 41 92.7
Dinv42637 Davidia involucrata HOM05D001755 ORTHO05D001665 2.1e-14 82.0 41 95.1
Glyma.04G093000 Glycine max HOM05D001755 ORTHO05D001665 2.1e-14 82.0 41 92.7
Gohir.A05G265200 Gossypium hirsutum HOM05D001755 ORTHO05D001665 2.1e-14 82.0 41 92.7
Phvul.008G179600 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 2.1e-14 82.0 41 95.1
Phvul.009G038300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 2.1e-14 82.0 41 92.7
Ah.01g024020 Amaranthus hybridus HOM05D001755 ORTHO05D006340 2.7e-14 81.6 53 79.2
Oeu049223.1 Olea europaea HOM05D001755 ORTHO05D001665 2.7e-14 81.6 41 92.7
Dinv24160 Davidia involucrata HOM05D001755 ORTHO05D001665 3.6e-14 81.3 41 92.7
FAN13G1260 Fragaria x ananassa HOM05D001755 ORTHO05D001665 3.6e-14 81.3 43 88.4
Sc26g0000250 Simmondsia chinensis HOM05D001755 ORTHO05D001665 3.6e-14 81.3 41 90.2
CiPaw.06G156900 Carya illinoinensis HOM05D001755 ORTHO05D001665 4.7e-14 80.9 41 92.7
MELO3C018591.2 Cucumis melo HOM05D001755 ORTHO05D001665 4.7e-14 80.9 44 86.4
FAN08G0378 Fragaria x ananassa HOM05D001755 ORTHO05D001665 4.7e-14 80.9 42 90.5
Glyma.02G212300 Glycine max HOM05D001755 ORTHO05D001665 4.7e-14 80.9 41 92.7
Glyma.14G180100 Glycine max HOM05D001755 ORTHO05D001665 4.7e-14 80.9 41 92.7
MD15G1381800 Malus domestica HOM05D001755 ORTHO05D001665 4.7e-14 80.9 41 92.7
Prupe.8G067700 Prunus persica HOM05D001755 ORTHO05D001665 4.7e-14 80.9 41 92.7
Sed0014860 Sechium edule HOM05D001755 ORTHO05D001665 4.7e-14 80.9 41 92.7
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 4.7e-14 80.9 41 92.7
SEGI_04003 Sequoiadendron giganteum HOM05D001755 ORTHO05D001665 4.7e-14 80.9 41 90.2
Aa31sc34G40 Aethionema arabicum HOM05D001755 ORTHO05D001665 6.1e-14 80.5 43 83.7
AUR62019010 Chenopodium quinoa HOM05D001755 ORTHO05D001665 6.1e-14 80.5 42 88.1
Gohir.A03G175950 Gossypium hirsutum HOM05D001755 ORTHO05D001665 6.1e-14 80.5 41 87.8
Gohir.D02G199750 Gossypium hirsutum HOM05D001755 ORTHO05D001665 6.1e-14 80.5 41 87.8
Gorai.005G224400 Gossypium raimondii HOM05D001755 ORTHO05D001665 6.1e-14 80.5 41 87.8
Manes.02G146800 Manihot esculenta HOM05D001755 ORTHO05D001665 6.1e-14 80.5 41 92.7
Rhsim05G0102500 Rhododendron simsii HOM05D001755 ORTHO05D001665 6.1e-14 80.5 41 92.7
vmacro19953 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 6.1e-14 80.5 41 92.7
Aqoxy6G01463 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 8.0e-14 80.1 63 68.3
arahy.Tifrunner.gnm1.ann1.0E4ZKW Arachis hypogaea HOM05D001755 ORTHO05D001665 8.0e-14 80.1 48 77.1
arahy.Tifrunner.gnm1.ann1.IVYM6W Arachis hypogaea HOM05D001755 ORTHO05D001665 1.0e-13 79.7 42 88.1
EL10Ac9g22086 Beta vulgaris HOM05D001755 ORTHO05D001665 1.0e-13 79.7 42 85.7
ClCG09G015900 Citrullus lanatus HOM05D001755 ORTHO05D001665 1.0e-13 79.7 41 90.2
Nitab4.5_0002650g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.0e-13 79.7 51 74.5
Sed0017446 Sechium edule HOM05D001755 ORTHO05D001665 1.0e-13 79.7 41 92.7
arahy.Tifrunner.gnm1.ann1.KFP2BM Arachis hypogaea HOM05D001755 ORTHO05D001665 1.4e-13 79.3 41 87.8
arahy.Tifrunner.gnm1.ann1.NI9N2T Arachis hypogaea HOM05D001755 ORTHO05D001665 1.4e-13 79.3 41 87.8
Hma1.2p1_0010F.1_g007000 Hydrangea macrophylla HOM05D001755 ORTHO05D001665 1.4e-13 79.3 42 85.7
Potri.007G112900 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.4e-13 79.3 41 90.2
RcHm_v2.0_Chr7g0237501 Rosa chinensis HOM05D001755 ORTHO05D001665 1.4e-13 79.3 41 90.2
Sabra07G0092200 Salix brachista HOM05D001755 ORTHO05D001665 1.4e-13 79.3 41 90.2
SGA_v2.0_scaffold219G42570 Striga asiatica HOM05D001755 ORTHO05D001665 1.4e-13 79.3 42 90.5
VMungo1309G0268 Vigna mungo HOM05D001755 ORTHO05D001665 1.4e-13 79.3 42 85.7
arahy.Tifrunner.gnm1.ann1.KCV3PX Arachis hypogaea HOM05D001755 ORTHO05D001665 1.8e-13 79.0 44 81.8
Thecc.02G132000 Theobroma cacao HOM05D001755 ORTHO05D001665 1.8e-13 79.0 41 85.4
VMungo0540G1031 Vigna mungo HOM05D001755 ORTHO05D001665 1.8e-13 79.0 41 90.2
arahy.Tifrunner.gnm1.ann1.FV0XI2 Arachis hypogaea HOM05D001755 ORTHO05D001665 2.3e-13 78.6 42 85.7
Duzib052G1081 Durio zibethinus HOM05D001755 ORTHO05D001665 2.3e-13 78.6 42 81.0
MD04G1047500 Malus domestica HOM05D001755 ORTHO05D001665 2.3e-13 78.6 41 87.8
Duzib132G0573 Durio zibethinus HOM05D001755 ORTHO05D001665 3.0e-13 78.2 42 83.3
EL10Ac1g01104 Beta vulgaris HOM05D001755 ORTHO05D001665 4.0e-13 77.8 41 87.8
AUR62027851 Chenopodium quinoa HOM05D001755 ORTHO05D001665 4.0e-13 77.8 56 71.4
Potri.017G047932 Populus trichocarpa HOM05D001755 ORTHO05D001665 4.0e-13 77.8 41 87.8
Migut.B00565 Erythranthe guttata HOM05D001755 ORTHO05D001665 5.2e-13 77.4 41 85.4
HanXRQChr05g0163291 Helianthus annuus HOM05D001755 ORTHO05D001665 5.2e-13 77.4 41 87.8
HanXRQChr05g0163551 Helianthus annuus HOM05D001755 ORTHO05D001665 5.2e-13 77.4 41 87.8
Phvul.006G203500 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 5.2e-13 77.4 41 87.8
Manes.10G102000 Manihot esculenta HOM05D001755 ORTHO05D001665 6.8e-13 77.0 41 87.8
Sed0017055 Sechium edule HOM05D001755 ORTHO05D001665 6.8e-13 77.0 41 87.8
LjContig00408g0004832 Lotus japonicus HOM05D001755 ORTHO05D001665 8.8e-13 76.6 41 85.4
Manes.07G036900 Manihot esculenta HOM05D001755 ORTHO05D001665 8.8e-13 76.6 41 85.4
Oeu022087.1 Olea europaea HOM05D001755 ORTHO05D001665 8.8e-13 76.6 41 85.4
Psat2g065840 Pisum sativum HOM05D001755 ORTHO05D001665 8.8e-13 76.6 41 85.4
CAN.G523.28 Capsicum annuum HOM05D001755 ORTHO05D001665 1.2e-12 76.3 41 87.8
Lalb_Chr11g0065111 Lupinus albus HOM05D001755 ORTHO05D001665 1.5e-12 75.9 41 85.4
VMungo0251G2544 Vigna mungo HOM05D001755 ORTHO05D001665 1.5e-12 75.9 48 77.1
Lj1g0001104 Lotus japonicus HOM05D001755 ORTHO05D001665 2.0e-12 75.5 41 82.9
arahy.Tifrunner.gnm1.ann1.ZL8253 Arachis hypogaea HOM05D001755 ORTHO05D001665 2.6e-12 75.1 41 82.9
Glyma.15G056700 Glycine max HOM05D001755 ORTHO05D001665 2.6e-12 75.1 41 85.4
Lalb_Chr08g0242371 Lupinus albus HOM05D001755 ORTHO05D001665 2.6e-12 75.1 41 82.9
Medtr5g065670 Medicago truncatula HOM05D001755 ORTHO05D001665 2.6e-12 75.1 41 85.4
SGA_v2.0_scaffold145G36024 Striga asiatica HOM05D001755 ORTHO05D001665 2.6e-12 75.1 41 82.9
Ciclev10006528m.g Citrus clementina HOM05D001755 ORTHO05D001665 3.4e-12 74.7 41 82.9
Migut.L01932 Erythranthe guttata HOM05D001755 ORTHO05D001665 3.4e-12 74.7 41 87.8
Lalb_Chr04g0252981 Lupinus albus HOM05D001755 ORTHO05D001665 3.4e-12 74.7 41 80.5
SGA_v2.0_scaffold14G07146 Striga asiatica HOM05D001755 ORTHO05D001665 3.4e-12 74.7 41 85.4
Glyma.07G181100 Glycine max HOM05D001755 ORTHO05D001665 4.4e-12 74.3 41 87.8
Glyma.08G069600 Glycine max HOM05D001755 ORTHO05D001665 5.7e-12 73.9 41 87.8
Phvul.002G211300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 5.7e-12 73.9 41 87.8
Sed0003373 Sechium edule HOM05D001755 ORTHO05D001665 7.5e-12 73.6 41 82.9
FAN18G3889 Fragaria x ananassa HOM05D001755 ORTHO05D001665 9.7e-12 73.2 37 89.2
Solyc01g105700.3 Solanum lycopersicum HOM05D001755 ORTHO05D001665 1.3e-11 72.8 41 82.9
Ciclev10003720m.g Citrus clementina HOM05D001755 ORTHO05D001665 1.7e-11 72.4 41 80.5
Hund16874 Selenicereus undatus HOM05D001755 ORTHO05D001665 2.2e-11 72.0 41 78.0
Lalb_Chr17g0344421 Lupinus albus HOM05D001755 ORTHO05D001665 2.8e-11 71.6 41 85.4
Lj4g0016585 Lotus japonicus HOM05D001755 ORTHO05D001665 6.3e-11 70.5 41 80.5
Sabra17G0032400 Salix brachista HOM05D001755 ORTHO05D001665 8.3e-11 70.1 51 64.7
DCAR_029187 Daucus carota HOM05D001755 ORTHO05D001665 2.4e-10 68.6 41 80.5
CDE10G0928 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 7.0e-10 67.0 41 73.2
Lalb_Chr05g0217661 Lupinus albus HOM05D001755 ORTHO05D001665 1.6e-09 65.9 41 78.0
Oeu060039.1 Olea europaea HOM05D001755 ORTHO05D001665 2.0e-09 65.5 41 80.5
BcaC03g18258 Brassica carinata HOM05D001755 ORTHO05D001665 5.9e-09 63.9 41 68.3
BraA02t09253Z Brassica rapa HOM05D001755 ORTHO05D001665 7.7e-09 63.5 41 65.9
CDE10G0731 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 1.0e-08 63.2 60 48.3
Thhalv10005432m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 2.9e-08 61.6 41 65.9
Aa31LG1G17560 Aethionema arabicum HOM05D001755 ORTHO05D001665 3.8e-08 61.2 41 63.4
Aa31LG3G17530 Aethionema arabicum HOM05D001755 ORTHO05D001665 5.0e-08 60.8 41 63.4
BcaB07g29738 Brassica carinata HOM05D001755 ORTHO05D001665 6.5e-08 60.5 42 61.9
BcaC01g06905 Brassica carinata HOM05D001755 ORTHO05D001665 6.5e-08 60.5 63 47.6
C03p61950 Brassica napus HOM05D001755 ORTHO05D001665 6.5e-08 60.5 63 47.6
BolC3t18454H Brassica oleracea HOM05D001755 ORTHO05D001665 6.5e-08 60.5 63 47.6
Carub.0008s0991 Capsella rubella HOM05D001755 ORTHO05D001665 6.5e-08 60.5 41 73.2
unitig_62.g23628 Utricularia gibba HOM05D001755 ORTHO05D001665 8.5e-08 60.1 42 61.9
Carub.0008s2514 Capsella rubella HOM05D001755 ORTHO05D001665 1.1e-07 59.7 41 61.0
CARHR278280 Cardamine hirsuta HOM05D001755 ORTHO05D001665 3.2e-07 58.2 41 58.5
Thhalv10015558m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 7.2e-07 57.0 42 64.3
Carub.0006s0803 Capsella rubella HOM05D001755 ORTHO05D001665 9.4e-07 56.6 42 64.3
CARHR203920 Cardamine hirsuta HOM05D001755 ORTHO05D001665 9.4e-07 56.6 42 64.3
unitig_699.g19865 Utricularia gibba HOM05D001755 ORTHO05D001665 9.4e-07 56.6 64 46.9
arahy.Tifrunner.gnm1.ann1.TNQK97 Arachis hypogaea HOM05D014644 ORTHO05D001665 4.7e-06 54.3 47 53.2


User provided reference genes

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