Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0584 Trochodendron aralioides HOM05D003234 ORTHO05D003635 1.4e-90 336.3 176 100.0
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.7e-27 126.7 90 82.2
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.7e-27 126.7 90 82.2
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.7e-27 126.7 90 82.2
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 2.3e-27 126.3 90 82.2
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 8.7e-27 124.4 90 82.2
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 8.7e-27 124.4 96 75.0
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 8.7e-27 124.4 96 75.0
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.5e-26 123.6 96 75.0
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 1.9e-26 123.2 90 78.9
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 1.9e-26 123.2 90 80.0
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.9e-26 123.2 96 75.0
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 1.9e-26 123.2 90 81.1
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.5e-26 122.9 96 74.0
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 2.5e-26 122.9 90 78.9
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 3.3e-26 122.5 96 72.9
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 5.6e-26 121.7 96 72.9
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 5.6e-26 121.7 96 74.0
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 5.6e-26 121.7 90 78.9
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 7.3e-26 121.3 90 77.8
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 7.3e-26 121.3 90 77.8
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 9.6e-26 120.9 90 75.6
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 1.2e-25 120.6 90 77.8
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.2e-25 120.6 90 77.8
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.2e-25 120.6 98 74.5
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.2e-25 120.6 98 74.5
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 1.2e-25 120.6 90 76.7
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.6e-25 120.2 90 77.8
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 1.6e-25 120.2 90 76.7
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 2.1e-25 119.8 90 76.7
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.1e-25 119.8 90 77.8
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.8e-25 119.4 90 77.8
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 2.8e-25 119.4 90 76.7
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 2.8e-25 119.4 90 74.4
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 2.8e-25 119.4 90 77.8
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 2.8e-25 119.4 90 77.8
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 3.6e-25 119.0 91 76.9
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 3.6e-25 119.0 96 71.9
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 3.6e-25 119.0 90 77.8
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 4.7e-25 118.6 90 75.6
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 4.7e-25 118.6 90 75.6
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 8.1e-25 117.9 90 75.6
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 1.4e-24 117.1 96 69.8
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 1.4e-24 117.1 96 69.8
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 1.4e-24 117.1 96 69.8
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 1.4e-24 117.1 96 69.8
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 1.4e-24 117.1 96 69.8
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 1.4e-24 117.1 96 71.9
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 1.4e-24 117.1 90 76.7
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 1.4e-24 117.1 91 74.7
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 1.8e-24 116.7 99 67.7
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 2.4e-24 116.3 96 69.8
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 2.4e-24 116.3 90 74.4
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 2.4e-24 116.3 90 75.6
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 3.1e-24 115.9 90 74.4
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.1e-24 115.9 90 74.4
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.1e-24 115.9 90 74.4
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 3.1e-24 115.9 90 74.4
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 4.0e-24 115.5 90 72.2
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 4.0e-24 115.5 90 73.3
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 4.0e-24 115.5 90 73.3
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 4.0e-24 115.5 90 73.3
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 5.2e-24 115.2 90 72.2
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 5.2e-24 115.2 90 76.7
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 5.2e-24 115.2 90 73.3
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 6.9e-24 114.8 96 68.8
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 6.9e-24 114.8 92 71.7
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 6.9e-24 114.8 91 75.8
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 6.9e-24 114.8 90 73.3
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 9.0e-24 114.4 91 75.8
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 9.0e-24 114.4 91 75.8
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 9.0e-24 114.4 92 70.7
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 9.0e-24 114.4 96 72.9
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 9.0e-24 114.4 90 74.4
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 9.0e-24 114.4 91 72.5
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.2e-23 114.0 96 68.8
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 1.5e-23 113.6 91 72.5
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 1.5e-23 113.6 91 72.5
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 1.5e-23 113.6 91 76.9
QL02p013773 Quercus lobata HOM05D003234 ORTHO05D003635 1.5e-23 113.6 114 63.2
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 1.5e-23 113.6 91 71.4
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 2.0e-23 113.2 91 72.5
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 2.0e-23 113.2 91 72.5
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 2.0e-23 113.2 91 73.6
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 2.0e-23 113.2 91 74.7
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 2.6e-23 112.8 89 74.2
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 2.6e-23 112.8 90 72.2
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 3.4e-23 112.5 90 74.4
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 4.4e-23 112.1 90 71.1
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 4.4e-23 112.1 89 71.9
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 5.8e-23 111.7 94 70.2
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 9.9e-23 110.9 90 73.3
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 1.7e-22 110.2 89 67.4
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 1.7e-22 110.2 92 70.7
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 1.7e-22 110.2 91 73.6
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 2.2e-22 109.8 92 69.6
vmacro04393 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 2.2e-22 109.8 96 67.7
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 6.4e-22 108.2 90 70.0
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 6.4e-22 108.2 90 72.2
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 1.1e-21 107.5 90 73.3
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 1.1e-21 107.5 98 66.3
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 1.4e-21 107.1 90 71.1
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 3.2e-21 105.9 98 65.3
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 3.2e-21 105.9 98 65.3
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 5.4e-21 105.1 90 68.9
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 7.1e-21 104.8 90 64.4
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 7.1e-21 104.8 96 65.6
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 9.3e-21 104.4 90 68.9
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 1.2e-20 104.0 90 74.4
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 2.7e-20 102.8 93 72.0
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 3.5e-20 102.4 90 66.7
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 4.6e-20 102.1 98 64.3
Lsat_1_v5_gn_8_27741 Lactuca sativa HOM05D003234 ORTHO05D003635 6.0e-20 101.7 95 65.3
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 6.0e-20 101.7 90 71.1
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 7.8e-20 101.3 96 64.6
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 1.0e-19 100.9 95 64.2
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 1.7e-19 100.1 90 65.6
HanXRQChr12g0366591 Helianthus annuus HOM05D003234 ORTHO05D003635 6.6e-19 98.2 96 61.5
Lalb_Chr11g0061721 Lupinus albus HOM05D003234 ORTHO05D003635 6.6e-19 98.2 97 59.8
SHI08007 Sapria himalayana HOM05D003234 ORTHO05D003635 6.6e-19 98.2 97 64.9
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 1.1e-18 97.4 95 61.1
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 1.5e-18 97.1 90 63.3
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 3.3e-18 95.9 89 64.0
Lalb_Chr08g0246351 Lupinus albus HOM05D003234 ORTHO05D003635 5.6e-18 95.1 109 56.9
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 7.3e-18 94.7 92 62.0
ECA233G0660 Erigeron canadensis HOM05D003234 ORTHO05D003635 9.6e-18 94.4 88 62.5
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 1.3e-17 94.0 90 65.6
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 2.1e-17 93.2 91 67.0
CSS0034652 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 8.1e-17 91.3 89 64.0
BolC5t30606H Brassica oleracea HOM05D003234 ORTHO05D003635 1.4e-16 90.5 73 75.3
vmacro21831 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 5.3e-16 88.6 130 48.5
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 1.5e-15 87.0 85 58.8
PSO210G7820 Papaver somniferum HOM05D003234 ORTHO05D003635 2.0e-15 86.7 68 76.5
PSO170G0681 Papaver somniferum HOM05D003234 ORTHO05D003635 2.6e-15 86.3 75 72.0
Sabra05G0191800 Salix brachista HOM05D003234 ORTHO05D003635 2.2e-14 83.2 183 37.2
CDE09G0257 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 5.4e-13 78.6 90 57.8
HanXRQChr14g0428701 Helianthus annuus HOM05D003234 ORTHO05D003635 2.1e-12 76.6 92 51.1
Peaxi162Scf00064g01012 Petunia axillaris HOM05D003234 ORTHO05D003635 6.0e-12 75.1 75 57.3
Sabra02G0010200 Salix brachista HOM05D003234 ORTHO05D003635 1.1e-10 70.9 53 71.7
TAR376G0434 Trochodendron aralioides HOM05D003234 ORTHO05D003635 1.1e-10 70.9 54 79.6
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 1.9e-10 70.1 88 43.2
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 3.3e-10 69.3 88 43.2
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 2.1e-09 66.6 89 41.6
BraA07t31705Z Brassica rapa HOM05D003234 ORTHO05D003635 4.8e-09 65.5 52 69.2
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 2.4e-08 63.2 89 40.4
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 5.3e-08 62.0 88 39.8
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 5.3e-08 62.0 88 42.0
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 5.3e-08 62.0 89 39.3
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.2e-07 60.8 88 43.2
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 1.2e-07 60.8 88 37.5
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 1.2e-07 60.8 88 38.6
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 1.2e-07 60.8 88 37.5
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 1.2e-07 60.8 88 38.6
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 3.4e-07 59.3 88 38.6
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 9.9e-07 57.8 88 39.8
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.3e-06 57.4 88 40.9
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 1.3e-06 57.4 88 40.9
CARHR069740 Cardamine hirsuta HOM05D003234 ORTHO05D003635 1.3e-06 57.4 51 64.7
Lalb_Chr09g0322471 Lupinus albus HOM05D003234 ORTHO05D003635 1.3e-06 57.4 88 37.5
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 1.7e-06 57.0 87 39.1
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 2.2e-06 56.6 89 38.2
COL.COLO4_21608 Corchorus olitorius HOM05D003234 ORTHO05D003635 2.2e-06 56.6 36 80.6
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 3.8e-06 55.8 64 46.9
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 4.9e-06 55.5 89 39.3
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 6.4e-06 55.1 70 44.3
Thecc.01G037000 Theobroma cacao HOM05D003234 ORTHO05D003635 8.4e-06 54.7 88 36.4


User provided reference genes

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