Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2389.4 1280 100.0
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1876.3 1290 80.4
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1443.7 1287 65.2
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1439.1 1290 65.0
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1419.8 1257 67.7
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1352.8 1284 62.1
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 1318.5 1293 61.6
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1283.5 1285 59.6
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1273.1 1324 59.2
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1261.9 1295 59.5
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1246.5 1285 58.3
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 1246.5 1309 57.4
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1237.6 1280 57.9
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 1237.6 1277 59.0
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1199.9 1247 57.8
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1199.1 1041 66.4
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1195.6 1281 56.4
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1184.5 1342 55.2
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1177.2 1328 54.7
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1176.4 1346 54.7
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1172.9 1287 56.5
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1172.5 1282 57.2
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1169.8 1284 56.9
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1166.8 1285 56.9
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1146.7 1250 56.5
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1144.8 1286 55.8
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1142.1 1288 54.6
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1140.9 1247 56.0
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1140.6 1286 55.3
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1136.3 1284 54.0
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1134.4 1294 54.8
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1132.5 1284 54.0
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1126.7 1343 53.4
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1126.7 1349 53.2
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1125.5 1285 56.0
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1125.2 1038 63.7
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1122.1 1283 55.3
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1118.6 1276 55.2
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1115.5 1281 55.3
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1112.1 1342 53.1
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1109.0 1344 53.1
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1107.4 1260 55.7
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1094.7 1257 53.9
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1094.7 1284 53.3
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1094.7 1285 55.0
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1090.1 1288 53.6
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1086.6 1297 54.7
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1086.2 1289 53.4
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1083.6 1290 53.5
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1082.4 1247 54.4
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1081.6 1294 54.8
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1078.2 1293 52.4
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 8.8e-312 1074.7 1291 51.9
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 1.8e-311 1073.2 1293 52.4
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 4.4e-311 1071.6 1290 52.6
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 3.0e-310 1068.9 1247 53.4
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 1.2e-306 1057.0 1285 52.9
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 1.3e-305 1053.5 1267 52.5
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 1.4e-304 1050.0 1300 52.4
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 4.2e-304 1048.5 1291 52.2
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 9.3e-304 1047.3 1263 52.9
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 4.6e-303 1045.0 1287 50.4
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 4.6e-303 1045.0 1291 52.1
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 7.8e-303 1044.3 1285 51.8
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 2.3e-302 1042.7 1260 53.7
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 3.3e-301 1038.9 1287 51.7
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 1.6e-300 1036.6 1286 51.4
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 2.0e-298 1029.6 1282 49.9
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 1.4e-296 1023.5 1420 47.9
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 5.4e-296 1021.5 1300 51.3
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 2.5e-293 1012.7 1339 49.3
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 7.6e-290 1001.1 1223 51.8
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 2.4e-283 979.5 1317 50.9
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 2.2e-281 973.0 1261 50.8
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 6.7e-278 961.4 1355 48.4
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 1.3e-276 957.2 973 59.0
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 2.5e-272 943.0 1286 49.3
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 3.2e-272 942.6 1261 49.6
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 7.4e-269 931.4 1272 49.7
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 2.6e-266 922.9 1243 48.2
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 1.5e-261 907.1 1263 48.0
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 5.7e-261 905.2 1266 48.9
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 4.8e-260 902.1 1283 47.9
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 2.5e-256 889.8 1269 48.0
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 1.3e-252 877.5 1262 46.7
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 1.6e-247 860.5 1275 46.3
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 8.0e-247 858.2 1240 47.8
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 3.0e-246 856.3 1281 46.4
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 6.7e-246 855.1 1255 47.0
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 8.0e-231 805.1 731 63.3
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 1.7e-225 787.3 1286 44.2
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 2.0e-221 773.9 1254 45.6
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 1.7e-220 770.8 1274 44.4
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 9.5e-208 728.4 1240 44.9
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 5.2e-206 722.6 1353 42.1
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 2.2e-204 717.2 1318 44.3
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 9.5e-200 701.8 1241 41.3
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 3.5e-186 656.8 1258 40.9
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 1.1e-176 625.2 1264 40.3
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 1.6e-175 621.3 584 63.2
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 3.4e-173 613.6 1260 40.2
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 4.6e-170 603.2 1148 41.5
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 8.4e-164 582.4 1248 37.1
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.0e-161 575.5 1257 38.1
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 8.7e-161 572.4 1256 39.1
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 8.7e-161 572.4 1288 37.7
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 1.1e-155 555.4 640 54.2
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 3.8e-148 530.4 1246 36.8
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 1.4e-147 528.5 726 47.0
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 2.7e-138 497.7 468 59.2
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.0e-133 481.5 1298 34.0
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 2.3e-121 441.4 1262 34.7
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 2.3e-121 441.4 1260 34.5
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.5e-120 438.7 681 47.6
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 2.6e-120 438.0 1260 34.0
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 9.8e-120 436.0 955 37.4
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.7e-116 425.2 1264 32.8
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 5.5e-115 420.2 1257 34.4
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 5.5e-115 420.2 1257 34.4
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 3.2e-110 404.4 1292 33.1
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 2.7e-101 374.8 1405 32.5
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 1.2e-90 339.3 501 46.3
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 1.2e-82 312.8 305 54.8
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 7.1e-78 297.0 1358 30.9
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 5.8e-72 277.3 1374 30.1
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 9.3e-70 270.0 479 41.1
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 9.6e-67 260.0 1363 30.7
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 1.9e-59 235.7 575 35.8
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 2.0e-48 199.1 235 51.5
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 6.7e-44 184.1 1108 26.8
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 2.2e-42 179.1 330 40.0
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 1.5e-35 156.4 1063 28.2
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 5.7e-35 154.5 222 48.2
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 9.1e-33 147.1 163 55.2
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.1e-29 136.0 308 37.0
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 5.3e-25 121.3 379 32.2
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 1.4e-20 106.7 304 31.9
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.8e-18 99.0 197 42.1
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 4.5e-16 91.7 164 42.7
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 1.5e-14 86.7 78 60.3
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 2.5e-14 85.9 71 64.8
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 2.7e-13 82.4 183 37.7
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 1.0e-12 80.5 133 42.1
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 5.2e-12 78.2 46 87.0
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 8.8e-12 77.4 535 26.5
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 1.4e-09 70.1 126 38.1
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 1.0e-07 63.9 204 29.9
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.0e-07 63.9 96 45.8
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 1.0e-07 63.9 85 47.1


User provided reference genes

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