Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 2.4e-31 138.3 74 100.0
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 2.3e-21 105.1 71 81.7
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 2.8e-19 98.2 71 71.8
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 4.8e-19 97.4 74 75.7
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 4.8e-19 97.4 70 72.9
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 8.1e-19 96.7 67 71.6
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 1.1e-18 96.3 71 71.8
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 9.0e-18 93.2 69 71.0
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 9.0e-18 93.2 70 68.6
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 9.0e-18 93.2 67 71.6
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 1.5e-17 92.4 66 72.7
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 2.0e-17 92.0 70 70.0
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 2.0e-17 92.0 62 77.4
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 3.4e-17 91.3 70 70.0
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 3.4e-17 91.3 70 67.1
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 3.4e-17 91.3 70 70.0
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 4.5e-17 90.9 71 67.6
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 5.8e-17 90.5 71 70.4
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 5.8e-17 90.5 71 70.4
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 1.7e-16 89.0 73 67.1
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 2.9e-16 88.2 70 67.1
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 2.9e-16 88.2 70 65.7
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 3.8e-16 87.8 71 64.8
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 8.4e-16 86.7 69 69.6
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 1.4e-15 85.9 69 66.7
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 1.9e-15 85.5 70 67.1
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 3.2e-15 84.7 70 62.9
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 4.2e-15 84.3 63 68.3
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 9.3e-15 83.2 67 64.2
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 9.3e-15 83.2 67 64.2
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 1.6e-14 82.4 71 60.6
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 2.7e-14 81.6 66 66.7
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 2.7e-14 81.6 65 63.1
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 4.6e-14 80.9 100 51.0
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 4.6e-14 80.9 100 51.0
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 6.0e-14 80.5 69 60.9
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 1.0e-13 79.7 67 65.7
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 1.0e-13 79.7 69 60.9
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 1.0e-13 79.7 64 65.6
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 1.0e-13 79.7 70 65.7
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 1.8e-13 79.0 70 62.9
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 2.3e-13 78.6 71 57.7
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 3.9e-13 77.8 70 58.6
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 5.1e-13 77.4 72 56.9
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 5.1e-13 77.4 68 61.8
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 8.7e-13 76.6 68 58.8
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 8.7e-13 76.6 68 60.3
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 8.7e-13 76.6 66 62.1
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 1.1e-12 76.3 68 60.3
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 1.5e-12 75.9 66 60.6
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.9e-12 75.5 66 63.6
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 2.5e-12 75.1 68 58.8
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 2.5e-12 75.1 68 60.3
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 3.3e-12 74.7 68 57.4
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 3.3e-12 74.7 68 57.4
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 4.3e-12 74.3 68 57.4
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 5.6e-12 73.9 68 57.4
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 7.4e-12 73.6 68 58.8
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 7.4e-12 73.6 68 57.4
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 7.4e-12 73.6 68 55.9
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 1.3e-11 72.8 68 57.4
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 1.3e-11 72.8 66 56.1
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 1.6e-11 72.4 73 54.8
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 1.6e-11 72.4 65 58.5
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 2.1e-11 72.0 64 60.9
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 2.1e-11 72.0 65 61.5
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 2.1e-11 72.0 66 59.1
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 4.8e-11 70.9 65 61.5
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 8.1e-11 70.1 66 56.1
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 1.4e-10 69.3 66 54.5
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 1.8e-10 68.9 70 54.3
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 6.9e-10 67.0 68 54.4
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 1.2e-09 66.2 68 54.4
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 1.5e-09 65.9 106 40.6
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 2.0e-09 65.5 68 52.9
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 2.0e-09 65.5 68 55.9
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 2.6e-09 65.1 68 51.5
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 1.3e-08 62.8 63 50.8
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 2.2e-08 62.0 45 66.7
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 6.5e-08 60.5 69 47.8
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 6.5e-08 60.5 71 47.9
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 1.1e-07 59.7 68 45.6
SEGI_16653 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 2.7e-06 55.1 66 47.0


User provided reference genes

Program Settings