Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0530 Trochodendron aralioides HOM05D000277 ORTHO05D000214 9.2e-36 152.9 71 100.0
TAR628G1117 Trochodendron aralioides HOM05D000277 ORTHO05D000214 8.6e-18 93.2 46 93.5
TAR063G0006 Trochodendron aralioides HOM05D000277 ORTHO05D000214 1.9e-17 92.0 46 89.1
Nn5g30359 Nelumbo nucifera HOM05D000277 ORTHO05D000214 3.5e-11 71.2 46 63.0
BcaB07g30601 Brassica carinata HOM05D000277 ORTHO05D000214 7.8e-11 70.1 46 56.5
Cfa018068 Carpinus fangiana HOM05D000277 ORTHO05D000214 7.8e-11 70.1 46 60.9
Haze_18042 Corylus avellana HOM05D000277 ORTHO05D000214 7.8e-11 70.1 46 60.9
CANSAT35G0886 Cannabis sativa HOM05D000277 ORTHO05D000214 1.0e-10 69.7 46 63.0
Cfa018067 Carpinus fangiana HOM05D000277 ORTHO05D000214 1.3e-10 69.3 46 60.9
Haze_18040 Corylus avellana HOM05D000277 ORTHO05D000214 1.3e-10 69.3 46 60.9
QL02p004304 Quercus lobata HOM05D000277 ORTHO05D000214 3.0e-10 68.2 46 58.7
Cfa018066 Carpinus fangiana HOM05D000277 ORTHO05D000214 3.9e-10 67.8 46 58.7
MELO3C016769.2 Cucumis melo HOM05D000277 ORTHO05D000214 3.9e-10 67.8 40 67.5
CsaV3_4G034510 Cucumis sativus L. HOM05D000277 ORTHO05D000214 3.9e-10 67.8 40 67.5
BcaC06g31745 Brassica carinata HOM05D000277 ORTHO05D000214 6.6e-10 67.0 42 57.1
Sp2g07540 Schrenkiella parvula HOM05D000277 ORTHO05D000214 1.1e-09 66.2 46 54.3
Haze_18043 Corylus avellana HOM05D000277 ORTHO05D000214 1.5e-09 65.9 46 56.5
MELO3C016768.2 Cucumis melo HOM05D000277 ORTHO05D000214 1.5e-09 65.9 44 59.1
AL1008U10010 Arabidopsis lyrata HOM05D000277 ORTHO05D000214 2.5e-09 65.1 46 52.2
AL8G18180 Arabidopsis lyrata HOM05D000277 ORTHO05D000214 2.5e-09 65.1 46 52.2
Nn5g27163 Nelumbo nucifera HOM05D000277 ORTHO05D000214 2.5e-09 65.1 46 56.5
BcaC02g10804 Brassica carinata HOM05D000277 ORTHO05D000214 3.3e-09 64.7 46 52.2
C04p24970 Brassica napus HOM05D000277 ORTHO05D000214 3.3e-09 64.7 46 52.2
BolC4t23996H Brassica oleracea HOM05D000277 ORTHO05D000214 3.3e-09 64.7 46 52.2
COL.COLO4_34795 Corchorus olitorius HOM05D000277 ORTHO05D000214 3.3e-09 64.7 43 60.5
Potri.014G025550 Populus trichocarpa HOM05D000277 ORTHO05D000214 3.3e-09 64.7 43 53.5
Sed0018029 Sechium edule HOM05D000277 ORTHO05D000214 3.3e-09 64.7 40 65.0
EL10Ac1g00984 Beta vulgaris HOM05D000277 ORTHO05D000214 4.3e-09 64.3 46 60.9
CiPaw.16G040200 Carya illinoinensis HOM05D000277 ORTHO05D000214 4.3e-09 64.3 46 58.7
Eucgr.F00198 Eucalyptus grandis HOM05D000277 ORTHO05D000214 4.3e-09 64.3 43 60.5
FvH4_2g34050 Fragaria vesca HOM05D000277 ORTHO05D000214 5.6e-09 63.9 46 63.0
BcaC03g16498 Brassica carinata HOM05D000277 ORTHO05D000214 7.3e-09 63.5 46 52.2
A02p27590 Brassica napus HOM05D000277 ORTHO05D000214 7.3e-09 63.5 46 52.2
C02p43120 Brassica napus HOM05D000277 ORTHO05D000214 7.3e-09 63.5 46 52.2
BolC2t10359H Brassica oleracea HOM05D000277 ORTHO05D000214 7.3e-09 63.5 46 52.2
BraA02t07792Z Brassica rapa HOM05D000277 ORTHO05D000214 7.3e-09 63.5 46 52.2
Carub.0008s0608 Capsella rubella HOM05D000277 ORTHO05D000214 7.3e-09 63.5 46 50.0
FAN24G2415 Fragaria x ananassa HOM05D000277 ORTHO05D000214 7.3e-09 63.5 46 63.0
CSS0028240 Camellia sinensis var. sinensis HOM05D000277 ORTHO05D000214 9.5e-09 63.2 45 62.2
COL.COLO4_26550 Corchorus olitorius HOM05D000277 ORTHO05D000214 9.5e-09 63.2 43 62.8
Lj1g0007573 Lotus japonicus HOM05D000277 ORTHO05D000214 9.5e-09 63.2 69 49.3
Manes.18G040100 Manihot esculenta HOM05D000277 ORTHO05D000214 9.5e-09 63.2 43 58.1
CsaV3_4G034500 Cucumis sativus L. HOM05D000277 ORTHO05D000214 1.2e-08 62.8 40 57.5
Gorai.010G021700 Gossypium raimondii HOM05D000277 ORTHO05D000214 1.2e-08 62.8 43 60.5
Nn5g27898 Nelumbo nucifera HOM05D000277 ORTHO05D000214 1.2e-08 62.8 46 52.2
QL02p004357 Quercus lobata HOM05D000277 ORTHO05D000214 1.2e-08 62.8 43 60.5
Thhalv10003208m.g Eutrema salsugineum HOM05D000277 ORTHO05D000214 1.6e-08 62.4 46 50.0
Sed0010258 Sechium edule HOM05D000277 ORTHO05D000214 1.6e-08 62.4 40 55.0
QL02p004354 Quercus lobata HOM05D000277 ORTHO05D000214 2.1e-08 62.0 43 58.1
GSVIVG01009462001 Vitis vinifera HOM05D000277 ORTHO05D000214 2.1e-08 62.0 46 63.0
Eucgr.F00203 Eucalyptus grandis HOM05D000277 ORTHO05D000214 2.8e-08 61.6 43 58.1
FAN20G2329 Fragaria x ananassa HOM05D000277 ORTHO05D000214 2.8e-08 61.6 40 62.5
Gohir.A06G020300 Gossypium hirsutum HOM05D000277 ORTHO05D000214 2.8e-08 61.6 43 58.1
Sabra01G0006000 Salix brachista HOM05D000277 ORTHO05D000214 2.8e-08 61.6 43 55.8
CSS0044465 Camellia sinensis var. sinensis HOM05D000277 ORTHO05D000214 3.6e-08 61.2 45 60.0
COL.COLO4_17469 Corchorus olitorius HOM05D000277 ORTHO05D000214 3.6e-08 61.2 40 60.0
Eucgr.F00202 Eucalyptus grandis HOM05D000277 ORTHO05D000214 3.6e-08 61.2 41 61.0
Glyma.04G039900 Glycine max HOM05D000277 ORTHO05D000214 3.6e-08 61.2 46 58.7
Gohir.A06G020200 Gossypium hirsutum HOM05D000277 ORTHO05D000214 3.6e-08 61.2 43 58.1
PSO675G7578 Papaver somniferum HOM05D000277 ORTHO05D000214 3.6e-08 61.2 44 54.5
Sabra14G0017500 Salix brachista HOM05D000277 ORTHO05D000214 3.6e-08 61.2 43 55.8
CANSAT78G1356 Cannabis sativa HOM05D000277 ORTHO05D000214 4.7e-08 60.8 46 56.5
ClCG05G020040 Citrullus lanatus HOM05D000277 ORTHO05D000214 4.7e-08 60.8 45 53.3
AT5G42830 Arabidopsis thaliana HOM05D000277 ORTHO05D000214 6.2e-08 60.5 46 50.0
FAN27G1622 Fragaria x ananassa HOM05D000277 ORTHO05D000214 6.2e-08 60.5 46 58.7
PSO541G6208 Papaver somniferum HOM05D000277 ORTHO05D000214 6.2e-08 60.5 44 54.5
Peaxi162Scf00504g00011 Petunia axillaris HOM05D000277 ORTHO05D000214 6.2e-08 60.5 46 58.7
Thecc.08G003400 Theobroma cacao HOM05D000277 ORTHO05D000214 6.2e-08 60.5 43 58.1
CsaV3_4G034520 Cucumis sativus L. HOM05D000277 ORTHO05D000214 8.1e-08 60.1 41 58.5
Dinv35938 Davidia involucrata HOM05D000277 ORTHO05D000214 8.1e-08 60.1 42 57.1
FAN15G0303 Fragaria x ananassa HOM05D000277 ORTHO05D000214 8.1e-08 60.1 40 60.0
Gohir.D06G018100 Gossypium hirsutum HOM05D000277 ORTHO05D000214 8.1e-08 60.1 42 54.8
Gorai.010G021000 Gossypium raimondii HOM05D000277 ORTHO05D000214 8.1e-08 60.1 42 54.8
PSO675G8550 Papaver somniferum HOM05D000277 ORTHO05D000214 8.1e-08 60.1 44 56.8
Ciclev10003138m.g Citrus clementina HOM05D000277 ORTHO05D000214 1.4e-07 59.3 41 58.5
Duzib093G1572 Durio zibethinus HOM05D000277 ORTHO05D000214 1.4e-07 59.3 43 55.8
PSO675G1456 Papaver somniferum HOM05D000277 ORTHO05D000214 1.4e-07 59.3 46 54.3
Prupe.1G432300 Prunus persica HOM05D000277 ORTHO05D000214 1.4e-07 59.3 41 56.1
Prupe.1G432400 Prunus persica HOM05D000277 ORTHO05D000214 1.4e-07 59.3 41 56.1
Sed0020969 Sechium edule HOM05D000277 ORTHO05D000214 1.4e-07 59.3 39 59.0
Gohir.D06G018700 Gossypium hirsutum HOM05D000277 ORTHO05D000214 1.8e-07 58.9 43 53.5
PGR083G0020 Punica granatum HOM05D000277 ORTHO05D000214 1.8e-07 58.9 42 54.8
EL10Ac5g12051 Beta vulgaris HOM05D000277 ORTHO05D000214 2.4e-07 58.5 41 61.0
CARHR181400 Cardamine hirsuta HOM05D000277 ORTHO05D000214 2.4e-07 58.5 46 47.8
PSO541G5198 Papaver somniferum HOM05D000277 ORTHO05D000214 2.4e-07 58.5 44 52.3
PSO675G8024 Papaver somniferum HOM05D000277 ORTHO05D000214 2.4e-07 58.5 44 54.5
TWI56G1327 Tripterygium wilfordii HOM05D000277 ORTHO05D000214 2.4e-07 58.5 42 57.1
CARHR181320 Cardamine hirsuta HOM05D000277 ORTHO05D000214 3.1e-07 58.2 46 47.8
Gohir.A06G019650 Gossypium hirsutum HOM05D000277 ORTHO05D000214 3.1e-07 58.2 42 50.0
Gohir.A06G019900 Gossypium hirsutum HOM05D000277 ORTHO05D000214 3.1e-07 58.2 42 57.1
Oeu023829.1 Olea europaea HOM05D000277 ORTHO05D000214 3.1e-07 58.2 43 55.8
Lj1g0003160 Lotus japonicus HOM05D000277 ORTHO05D000214 4.0e-07 57.8 69 44.9
PSO017G5827 Papaver somniferum HOM05D000277 ORTHO05D000214 4.0e-07 57.8 44 56.8
Potri.014G025500 Populus trichocarpa HOM05D000277 ORTHO05D000214 4.0e-07 57.8 43 53.5
Potri.014G025600 Populus trichocarpa HOM05D000277 ORTHO05D000214 4.0e-07 57.8 43 53.5
QL02p004334 Quercus lobata HOM05D000277 ORTHO05D000214 4.0e-07 57.8 43 58.1
Sed0019390 Sechium edule HOM05D000277 ORTHO05D000214 4.0e-07 57.8 42 61.9
AUR62007319 Chenopodium quinoa HOM05D000277 ORTHO05D000214 5.2e-07 57.4 44 52.3
AUR62022743 Chenopodium quinoa HOM05D000277 ORTHO05D000214 5.2e-07 57.4 46 54.3
Gohir.D06G018400 Gossypium hirsutum HOM05D000277 ORTHO05D000214 5.2e-07 57.4 42 57.1
Gorai.010G021300 Gossypium raimondii HOM05D000277 ORTHO05D000214 5.2e-07 57.4 42 57.1
Cpa.g.sc21.172 Carica papaya HOM05D000277 ORTHO05D000214 6.8e-07 57.0 42 57.1
ClCG05G020060 Citrullus lanatus HOM05D000277 ORTHO05D000214 6.8e-07 57.0 30 76.7
Cc02_g26250 Coffea canephora HOM05D000277 ORTHO05D000214 6.8e-07 57.0 46 50.0
MELO3C016770.2 Cucumis melo HOM05D000277 ORTHO05D000214 6.8e-07 57.0 41 58.5
MD15G1079200 Malus domestica HOM05D000277 ORTHO05D000214 6.8e-07 57.0 40 55.0
PSO017G1518 Papaver somniferum HOM05D000277 ORTHO05D000214 6.8e-07 57.0 44 52.3
Sed0003813 Sechium edule HOM05D000277 ORTHO05D000214 6.8e-07 57.0 42 59.5
AT5G07850 Arabidopsis thaliana HOM05D000277 ORTHO05D000214 8.9e-07 56.6 45 46.7
Gorai.010G021400 Gossypium raimondii HOM05D000277 ORTHO05D000214 8.9e-07 56.6 42 54.8
Lj1g0006174 Lotus japonicus HOM05D000277 ORTHO05D000214 8.9e-07 56.6 46 58.7
Sc02g0007330 Simmondsia chinensis HOM05D000277 ORTHO05D000214 8.9e-07 56.6 46 54.3
AUR62018688 Chenopodium quinoa HOM05D000277 ORTHO05D000214 1.2e-06 56.2 42 54.8
Manes.18G040200 Manihot esculenta HOM05D000277 ORTHO05D000214 1.2e-06 56.2 43 51.2
PSO017G1822 Papaver somniferum HOM05D000277 ORTHO05D000214 1.2e-06 56.2 44 52.3
PSO541G0293 Papaver somniferum HOM05D000277 ORTHO05D000214 1.2e-06 56.2 44 52.3
RcHm_v2.0_Chr6g0308301 Rosa chinensis HOM05D000277 ORTHO05D000214 1.2e-06 56.2 46 56.5
AT5G07860 Arabidopsis thaliana HOM05D000277 ORTHO05D000214 1.5e-06 55.8 45 44.4
Cc10_g13330 Coffea canephora HOM05D000277 ORTHO05D000214 1.5e-06 55.8 46 47.8
DCAR_008810 Daucus carota HOM05D000277 ORTHO05D000214 1.5e-06 55.8 40 55.0
FvH4_2g34060 Fragaria vesca HOM05D000277 ORTHO05D000214 1.5e-06 55.8 40 57.5
Gohir.A06G019750 Gossypium hirsutum HOM05D000277 ORTHO05D000214 1.5e-06 55.8 42 52.4
Lj4C769T3 Lonicera japonica HOM05D000277 ORTHO05D000214 1.5e-06 55.8 43 55.8
MD08G1096600 Malus domestica HOM05D000277 ORTHO05D000214 1.5e-06 55.8 41 58.5
PSO541G0511 Papaver somniferum HOM05D000277 ORTHO05D000214 1.5e-06 55.8 44 54.5
Sc02g0007300 Simmondsia chinensis HOM05D000277 ORTHO05D000214 1.5e-06 55.8 46 50.0
vmacro04441 Vaccinium macrocarpon HOM05D000277 ORTHO05D000214 1.5e-06 55.8 43 58.1
vmacro23488 Vaccinium macrocarpon HOM05D000277 ORTHO05D000214 1.5e-06 55.8 43 58.1
Lsat_1_v5_gn_1_21761 Lactuca sativa HOM05D000277 ORTHO05D000214 2.0e-06 55.5 43 48.8
Nn5g27905 Nelumbo nucifera HOM05D000277 ORTHO05D000214 2.0e-06 55.5 47 57.4
RcHm_v2.0_Chr6g0308321 Rosa chinensis HOM05D000277 ORTHO05D000214 2.0e-06 55.5 40 52.5
RcHm_v2.0_Chr6g0308421 Rosa chinensis HOM05D000277 ORTHO05D000214 2.0e-06 55.5 40 57.5
Aa31LG9G12900 Aethionema arabicum HOM05D000277 ORTHO05D000214 2.6e-06 55.1 42 50.0
AL6G18190 Arabidopsis lyrata HOM05D000277 ORTHO05D000214 2.6e-06 55.1 47 46.8
CARHR205330 Cardamine hirsuta HOM05D000277 ORTHO05D000214 2.6e-06 55.1 45 46.7
AUR62018686 Chenopodium quinoa HOM05D000277 ORTHO05D000214 2.6e-06 55.1 40 55.0
Gohir.A06G019800 Gossypium hirsutum HOM05D000277 ORTHO05D000214 2.6e-06 55.1 42 54.8
HanXRQChr02g0040531 Helianthus annuus HOM05D000277 ORTHO05D000214 2.6e-06 55.1 41 53.7
VMungo1309G0636 Vigna mungo HOM05D000277 ORTHO05D000214 2.6e-06 55.1 46 52.2
GSVIVG01009456001 Vitis vinifera HOM05D000277 ORTHO05D000214 2.6e-06 55.1 35 62.9
AT5G07870 Arabidopsis thaliana HOM05D000277 ORTHO05D000214 3.4e-06 54.7 45 46.7
Cc10_g13340 Coffea canephora HOM05D000277 ORTHO05D000214 3.4e-06 54.7 46 45.7
Nitab4.5_0010126g0010 Nicotiana tabacum HOM05D000277 ORTHO05D000214 3.4e-06 54.7 40 57.5
QL10p025269 Quercus lobata HOM05D000277 ORTHO05D000214 3.4e-06 54.7 42 54.8
Nitab4.5_0000287g0050 Nicotiana tabacum HOM05D000277 ORTHO05D000214 4.4e-06 54.3 40 57.5
PGSC0003DMG400034352 Solanum tuberosum HOM05D000277 ORTHO05D000214 4.4e-06 54.3 46 54.3
THA.LOC104820492 Tarenaya hassleriana HOM05D000277 ORTHO05D000214 4.4e-06 54.3 42 50.0
Glyma.06G041400 Glycine max HOM05D000277 ORTHO05D000214 7.6e-06 53.5 46 50.0
Hma1.2p1_2761F.1_g328100 Hydrangea macrophylla HOM05D000277 ORTHO05D000214 7.6e-06 53.5 46 52.2
Prupe.1G432500 Prunus persica HOM05D000277 ORTHO05D000214 7.6e-06 53.5 41 51.2
PGR083G0564 Punica granatum HOM05D000277 ORTHO05D000214 7.6e-06 53.5 42 52.4
QL02p004321 Quercus lobata HOM05D000277 ORTHO05D000214 7.6e-06 53.5 43 48.8
Rhsim07G0223300 Rhododendron simsii HOM05D000277 ORTHO05D000214 7.6e-06 53.5 43 51.2
AL6G18200 Arabidopsis lyrata HOM05D000277 ORTHO05D000214 9.9e-06 53.1 45 44.4
AUR62018685 Chenopodium quinoa HOM05D000277 ORTHO05D000214 9.9e-06 53.1 39 53.8
DCAR_024918 Daucus carota HOM05D000277 ORTHO05D000214 9.9e-06 53.1 41 53.7
Eucgr.F00200 Eucalyptus grandis HOM05D000277 ORTHO05D000214 9.9e-06 53.1 41 53.7
Lj6g0012724 Lotus japonicus HOM05D000277 ORTHO05D000214 9.9e-06 53.1 43 53.5
Phvul.009G066700 Phaseolus vulgaris HOM05D000277 ORTHO05D000214 9.9e-06 53.1 40 55.0


User provided reference genes

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