Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 4.5e-251 870.9 483 100.0
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 3.5e-139 499.2 391 70.1
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 3.3e-137 492.7 392 69.1
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 2.2e-136 490.0 391 67.0
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 1.1e-132 477.6 398 65.1
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 5.5e-132 475.3 391 65.5
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 8.8e-130 468.0 392 65.3
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 9.7e-129 464.5 375 68.3
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 1.4e-127 460.7 392 64.8
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.1e-127 459.5 405 63.2
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 4.1e-127 459.1 392 64.5
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.5e-126 457.2 386 64.8
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 1.9e-124 450.3 377 67.1
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 6.1e-123 445.3 393 60.8
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 1.8e-122 443.7 393 60.8
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 5.1e-122 442.2 392 60.7
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 6.7e-122 441.8 392 63.5
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 2.0e-121 440.3 376 64.6
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 8.2e-120 434.9 408 60.3
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 2.6e-118 429.9 407 58.2
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 4.5e-118 429.1 497 53.1
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 1.3e-117 427.6 379 63.1
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.2e-115 421.0 392 58.7
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 3.6e-115 419.5 372 63.2
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 4.7e-115 419.1 348 65.5
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 4.7e-115 419.1 391 56.0
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 6.1e-115 418.7 406 57.1
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.8e-114 417.2 373 62.2
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.7e-114 415.2 326 68.1
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 1.1e-113 414.5 392 59.4
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 2.0e-113 413.7 360 61.9
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 3.7e-112 409.5 407 58.2
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 1.1e-111 407.9 393 58.3
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.1e-111 407.9 391 58.1
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 1.4e-111 407.5 394 59.1
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 1.4e-111 407.5 391 57.0
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.4e-111 406.8 391 57.8
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 5.9e-110 402.1 347 62.0
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 7.7e-110 401.7 376 59.6
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.0e-109 401.4 435 54.0
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 2.2e-109 400.2 391 56.0
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 8.0e-107 391.7 391 55.8
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.0e-106 391.3 392 55.1
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 6.7e-106 388.7 379 58.8
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 1.5e-105 387.5 391 54.7
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.0e-105 387.1 368 56.2
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 4.4e-105 386.0 391 57.5
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.7e-104 382.9 407 55.8
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 8.3e-104 381.7 392 57.7
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 1.8e-103 380.6 376 59.3
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 4.1e-103 379.4 377 56.8
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.1e-103 379.4 391 54.7
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 2.0e-102 377.1 375 55.7
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 2.0e-102 377.1 391 54.5
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 7.7e-102 375.2 368 57.3
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 8.5e-101 371.7 379 57.0
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.1e-100 371.3 559 44.2
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 2.5e-100 370.2 383 54.3
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 7.2e-100 368.6 375 56.8
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 9.4e-100 368.2 407 54.1
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 1.6e-99 367.5 399 52.9
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 4.7e-99 365.9 391 51.7
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 8.0e-99 365.2 391 56.3
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 2.3e-98 363.6 391 50.9
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 3.0e-98 363.2 399 52.6
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 2.0e-97 360.5 391 51.9
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 2.0e-97 360.5 391 51.4
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 7.5e-97 358.6 408 51.2
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 7.5e-97 358.6 408 51.2
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 1.7e-96 357.5 408 51.2
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 2.8e-96 356.7 391 51.7
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 4.8e-96 355.9 393 52.2
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 8.3e-96 355.1 302 63.2
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 8.3e-96 355.1 401 51.6
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.4e-95 354.4 410 51.2
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 2.0e-94 350.5 380 55.5
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 2.7e-94 350.1 421 48.7
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.0e-93 348.2 393 52.9
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 2.9e-93 346.7 402 50.5
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 5.0e-93 345.9 400 53.2
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 6.6e-93 345.5 391 49.4
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 1.1e-92 344.7 311 59.2
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.5e-92 343.6 379 53.3
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 4.2e-92 342.8 448 46.9
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 9.5e-92 341.7 395 51.6
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 3.6e-91 339.7 407 50.9
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 2.3e-90 337.0 394 51.8
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 2.6e-89 333.6 391 48.1
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 5.7e-89 332.4 379 48.8
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 2.8e-88 330.1 288 63.9
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.4e-87 327.8 407 48.9
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 4.1e-87 326.2 382 50.3
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.7e-85 320.9 407 48.9
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 6.6e-85 318.9 371 48.5
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 7.3e-84 315.5 390 46.2
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 2.1e-83 313.9 415 46.5
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.1e-83 313.9 324 52.2
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 2.8e-83 313.5 373 48.5
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 3.1e-82 310.1 395 46.8
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 1.5e-81 307.8 376 49.5
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 3.4e-81 306.6 406 46.1
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 9.8e-81 305.1 406 46.1
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 6.4e-80 302.4 351 49.3
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 1.1e-79 301.6 246 61.8
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 2.7e-78 297.0 380 47.4
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 2.7e-78 297.0 410 46.8
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 2.3e-77 293.9 304 57.9
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 3.0e-77 293.5 382 46.3
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 4.7e-75 286.2 401 44.4
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 6.0e-70 269.2 400 45.8
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 1.6e-67 261.2 313 48.2
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 1.5e-65 254.6 286 50.0
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.4e-63 248.1 406 39.2
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 6.2e-59 232.6 230 53.5
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 8.1e-59 232.3 406 36.9
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 2.2e-56 224.2 261 51.0
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 2.2e-56 224.2 393 38.2
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.2e-55 219.9 410 38.3
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 5.4e-55 219.5 429 37.1
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 9.3e-55 218.8 219 52.5
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.1e-52 211.8 579 30.7
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 4.3e-52 209.9 205 53.2
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 7.3e-52 209.1 279 44.8
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 6.4e-48 196.1 336 36.3
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 3.1e-42 177.2 209 53.6
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 5.3e-42 176.4 176 62.5
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.3e-40 171.8 340 37.6
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 8.4e-40 169.1 205 44.9
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 1.4e-39 168.3 353 35.4
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 1.9e-36 157.9 136 65.4
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 9.0e-34 149.1 389 29.6
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 1.1e-31 142.1 203 40.4
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 3.9e-29 133.7 161 45.3
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.3e-26 123.2 323 32.5
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 4.5e-25 120.2 253 32.4
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 6.5e-24 116.3 105 66.7
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 3.0e-21 107.5 81 69.1
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.7e-21 106.3 99 53.5
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 8.7e-21 105.9 96 56.2
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.5e-20 105.1 76 60.5
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 7.4e-20 102.8 76 59.2
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 7.4e-20 102.8 180 37.2
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 3.1e-18 97.4 105 54.3
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 3.4e-17 94.0 74 66.2
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 5.0e-16 90.1 92 60.9
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 6.5e-16 89.7 108 53.7
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 2.3e-13 81.3 66 66.7
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 2.8e-11 74.3 78 46.2
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 2.0e-09 68.2 410 23.2
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 3.8e-08 63.9 162 29.6
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 5.5e-07 60.1 44 72.7
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 2.1e-06 58.2 387 22.0
PRCOL_00002550 Prasinoderma coloniale HOM05D004546 ORTHO05D005419 2.7e-06 57.8 183 24.6


User provided reference genes

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