Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 9.4e-159 563.5 295 100.0
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 9.8e-124 447.2 292 80.8
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 6.1e-118 427.9 301 75.1
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 6.3e-115 417.9 302 73.8
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 8.3e-115 417.5 297 74.1
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.1e-114 417.2 293 74.7
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 5.4e-114 414.8 258 81.0
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 5.9e-113 411.4 295 74.9
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 1.0e-112 410.6 294 73.1
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 2.3e-112 409.5 278 74.8
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 2.3e-112 409.5 278 74.8
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 5.0e-112 408.3 296 73.0
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 5.0e-112 408.3 296 73.0
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 8.6e-112 407.5 296 73.6
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 2.1e-110 402.9 288 72.9
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 2.1e-110 402.9 301 72.1
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 8.0e-110 401.0 298 74.2
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 1.7e-107 393.3 328 65.5
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.7e-107 393.3 297 71.0
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 2.2e-107 392.9 294 72.1
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 1.1e-106 390.6 302 70.5
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.4e-106 390.2 272 75.0
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 3.2e-106 389.0 302 71.2
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 4.1e-106 388.7 280 75.0
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 9.2e-106 387.5 286 73.1
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 7.8e-105 384.4 301 68.8
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.7e-104 383.3 300 69.7
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 5.6e-103 378.3 292 68.2
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 7.3e-103 377.9 301 68.8
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 9.5e-103 377.5 257 72.0
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 1.6e-102 376.7 284 70.1
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 3.6e-102 375.6 255 72.9
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 4.7e-102 375.2 301 68.8
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 4.7e-102 375.2 261 71.6
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 4.7e-102 375.2 261 71.6
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 1.8e-101 373.2 307 67.4
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.1e-101 372.5 300 68.3
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 5.2e-101 371.7 306 66.7
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 5.2e-101 371.7 272 72.4
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 8.9e-101 370.9 280 71.1
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 8.9e-101 370.9 269 74.3
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 1.5e-100 370.2 310 63.9
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 2.6e-100 369.4 251 72.5
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 3.4e-100 369.0 287 69.7
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 3.4e-100 369.0 257 72.8
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 5.8e-100 368.2 298 67.8
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 7.5e-100 367.9 280 72.9
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 1.3e-99 367.1 307 64.5
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 1.3e-99 367.1 273 72.9
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.7e-99 366.7 286 67.8
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 2.2e-99 366.3 231 77.9
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 2.9e-99 365.9 307 64.8
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 3.7e-99 365.5 288 65.6
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.9e-99 365.2 304 63.5
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 4.9e-99 365.2 257 71.6
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 1.1e-98 364.0 292 66.1
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 3.2e-98 362.5 287 67.6
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 2.1e-97 359.8 257 72.0
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 2.1e-97 359.8 255 75.7
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 6.0e-97 358.2 250 70.0
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 5.1e-96 355.1 241 73.9
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 1.9e-95 353.2 297 65.0
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 2.5e-95 352.8 282 63.1
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 3.3e-95 352.4 278 64.7
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 7.3e-95 351.3 241 73.0
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 1.2e-94 350.5 301 64.5
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 3.6e-94 349.0 282 64.5
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 6.2e-94 348.2 289 63.0
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 6.2e-94 348.2 230 73.9
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 1.8e-93 346.7 303 63.0
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 6.8e-93 344.7 281 63.0
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 1.2e-92 344.0 231 74.0
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 1.5e-92 343.6 276 63.4
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 1.5e-92 343.6 288 64.6
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 3.4e-92 342.4 287 62.4
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 4.4e-92 342.0 272 63.6
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 9.9e-92 340.9 267 64.4
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 3.7e-91 339.0 328 56.1
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 4.9e-91 338.6 293 62.5
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 4.9e-91 338.6 253 70.8
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 4.9e-91 338.6 261 65.1
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 1.1e-90 337.4 290 60.3
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 1.1e-90 337.4 288 61.1
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 2.4e-90 336.3 306 60.1
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 4.1e-90 335.5 290 60.3
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 5.4e-90 335.1 252 65.9
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 2.1e-89 333.2 286 62.6
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 2.7e-89 332.8 272 62.1
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 3.5e-89 332.4 294 60.9
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 1.0e-88 330.9 282 62.4
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.1e-87 327.4 336 53.9
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.2e-86 323.9 366 54.6
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 1.8e-85 320.1 419 46.8
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.3e-83 313.9 227 67.4
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 1.6e-78 297.0 232 65.5
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 2.1e-78 296.6 190 76.8
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 4.0e-77 292.4 316 55.7
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 1.1e-74 284.3 188 75.5
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.1e-74 284.3 225 67.6
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 1.6e-73 280.4 195 72.8
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 3.3e-71 272.7 273 52.0
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 3.1e-69 266.2 198 64.6
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 6.9e-69 265.0 244 52.5
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 4.5e-68 262.3 283 51.2
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 7.6e-68 261.5 212 61.3
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.7e-67 260.4 286 53.5
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 9.3e-66 254.6 275 52.7
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 1.5e-63 247.3 201 70.1
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 5.6e-63 245.4 255 52.9
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 8.4e-59 231.5 234 51.7
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 2.5e-55 219.9 271 44.3
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 8.2e-54 214.9 181 61.9
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 6.9e-53 211.8 278 43.5
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 5.8e-52 208.8 198 59.1
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 3.8e-51 206.1 142 76.1
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 7.4e-47 191.8 142 64.1
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.8e-45 187.2 246 43.9
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 5.0e-43 179.1 249 42.2
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 5.7e-39 165.6 203 45.3
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 1.7e-38 164.1 119 68.1
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 2.2e-30 137.1 163 47.2
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 6.1e-25 119.0 79 68.4
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 1.1e-18 98.2 77 58.4
Lsat_1_v5_gn_9_32780 Lactuca sativa HOM05D000379 ORTHO05D024309 1.3e-06 58.2 45 55.6
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 3.7e-06 56.6 36 77.8


User provided reference genes

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