Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0481 Trochodendron aralioides HOM05D004900 ORTHO05D006392 1.3e-78 296.2 141 100.0
vmacro02045 Vaccinium macrocarpon HOM05D004900 ORTHO05D006392 6.7e-54 214.2 104 92.3
Nn1g04853 Nelumbo nucifera HOM05D004900 ORTHO05D006392 3.3e-53 211.8 98 96.9
DCAR_029058 Daucus carota HOM05D004900 ORTHO05D006392 5.6e-53 211.1 98 94.9
Actinidia00438 Actinidia chinensis HOM05D004900 ORTHO05D006392 9.6e-53 210.3 98 96.9
CSS0038145 Camellia sinensis var. sinensis HOM05D004900 ORTHO05D006392 9.6e-53 210.3 98 96.9
Peaxi162Scf00003g01630 Petunia axillaris HOM05D004900 ORTHO05D006392 1.3e-52 209.9 98 93.9
Rhsim11G0165400 Rhododendron simsii HOM05D004900 ORTHO05D006392 1.3e-52 209.9 98 95.9
Solyc10g050890.2 Solanum lycopersicum HOM05D004900 ORTHO05D006392 1.6e-52 209.5 98 92.9
Sopen10g022530 Solanum pennellii HOM05D004900 ORTHO05D006392 1.6e-52 209.5 98 92.9
PGSC0003DMG400008262 Solanum tuberosum HOM05D004900 ORTHO05D006392 1.6e-52 209.5 98 92.9
Aqoxy6G01317 Aquilegia oxysepala HOM05D004900 ORTHO05D006392 2.8e-52 208.8 98 94.9
CAN.G149.20 Capsicum annuum HOM05D004900 ORTHO05D006392 4.8e-52 208.0 98 90.8
Prupe.8G126000 Prunus persica HOM05D004900 ORTHO05D006392 4.8e-52 208.0 98 95.9
ECA236G3626 Erigeron canadensis HOM05D004900 ORTHO05D006392 6.2e-52 207.6 98 92.9
Lsat_1_v5_gn_7_86981 Lactuca sativa HOM05D004900 ORTHO05D006392 8.1e-52 207.2 98 91.8
PSO170G4054 Papaver somniferum HOM05D004900 ORTHO05D006392 8.1e-52 207.2 98 92.9
CAN.G663.4 Capsicum annuum HOM05D004900 ORTHO05D006392 1.1e-51 206.8 98 90.8
Dinv42160 Davidia involucrata HOM05D004900 ORTHO05D006392 1.1e-51 206.8 98 93.9
Lalb_Chr05g0219191 Lupinus albus HOM05D004900 ORTHO05D006392 1.1e-51 206.8 98 94.9
PSO210G5341 Papaver somniferum HOM05D004900 ORTHO05D006392 1.1e-51 206.8 98 91.8
Nitab4.5_0000876g0100 Nicotiana tabacum HOM05D004900 ORTHO05D006392 1.4e-51 206.5 98 91.8
GSVIVG01031737001 Vitis vinifera HOM05D004900 ORTHO05D006392 1.4e-51 206.5 98 91.8
Ciclev10028067m.g Citrus clementina HOM05D004900 ORTHO05D006392 1.8e-51 206.1 98 93.9
QL11p035712 Quercus lobata HOM05D004900 ORTHO05D006392 1.8e-51 206.1 98 93.9
CANSAT25G2295 Cannabis sativa HOM05D004900 ORTHO05D006392 2.4e-51 205.7 98 93.9
Cc02_g28520 Coffea canephora HOM05D004900 ORTHO05D006392 2.4e-51 205.7 98 89.8
ATR0009G021 Amborella trichopoda HOM05D004900 ORTHO05D006392 3.1e-51 205.3 98 91.8
Thhalv10022613m.g Eutrema salsugineum HOM05D004900 ORTHO05D006392 3.1e-51 205.3 98 90.8
MBI03_g13466_MAGBIO Magnolia biondii HOM05D004900 ORTHO05D006392 3.1e-51 205.3 98 93.9
Oeu009747.1 Olea europaea HOM05D004900 ORTHO05D006392 3.1e-51 205.3 98 89.8
Cfa004525 Carpinus fangiana HOM05D004900 ORTHO05D006392 4.0e-51 204.9 98 93.9
Haze_10084 Corylus avellana HOM05D004900 ORTHO05D006392 4.0e-51 204.9 98 93.9
Ca_18688_v3 Cicer arietinum L. HOM05D004900 ORTHO05D006392 6.9e-51 204.1 98 93.9
Medtr4g086020 Medicago truncatula HOM05D004900 ORTHO05D006392 6.9e-51 204.1 98 92.9
AT2G15620 Arabidopsis thaliana HOM05D004900 ORTHO05D006392 9.0e-51 203.8 98 90.8
Migut.B00351 Erythranthe guttata HOM05D004900 ORTHO05D006392 9.0e-51 203.8 98 89.8
Pp3c27_6610 Physcomitrium patens HOM05D004900 ORTHO05D006392 9.0e-51 203.8 98 88.8
CiPaw.06G172200 Carya illinoinensis HOM05D004900 ORTHO05D006392 1.2e-50 203.4 98 92.9
Duzib248G0136 Durio zibethinus HOM05D004900 ORTHO05D006392 1.5e-50 203.0 98 92.9
HanXRQChr04g0128191 Helianthus annuus HOM05D004900 ORTHO05D006392 1.5e-50 203.0 98 90.8
Lj4g0002152 Lotus japonicus HOM05D004900 ORTHO05D006392 1.5e-50 203.0 98 91.8
Atru.chr5.2694 Acer truncatum HOM05D004900 ORTHO05D006392 2.0e-50 202.6 98 92.9
Hma1.2p1_0370F.1_g137745 Hydrangea macrophylla HOM05D004900 ORTHO05D006392 2.0e-50 202.6 98 93.9
AL3G47370 Arabidopsis lyrata HOM05D004900 ORTHO05D006392 2.6e-50 202.2 98 89.8
Potri.004G140800 Populus trichocarpa HOM05D004900 ORTHO05D006392 2.6e-50 202.2 98 91.8
TWI31G0729 Tripterygium wilfordii HOM05D004900 ORTHO05D006392 2.6e-50 202.2 98 91.8
HPP92_004223 Vanilla planifolia HOM05D004900 ORTHO05D006392 2.6e-50 202.2 98 90.8
HPP92_004227 Vanilla planifolia HOM05D004900 ORTHO05D006392 2.6e-50 202.2 98 90.8
MSTRG.16738 Avicennia marina HOM05D004900 ORTHO05D006392 3.4e-50 201.8 98 88.8
MD05G1081500 Malus domestica HOM05D004900 ORTHO05D006392 4.5e-50 201.4 98 92.9
Thecc.02G101200 Theobroma cacao HOM05D004900 ORTHO05D006392 4.5e-50 201.4 98 90.8
BcaC06g36073 Brassica carinata HOM05D004900 ORTHO05D006392 5.8e-50 201.1 98 88.8
A07p05130 Brassica napus HOM05D004900 ORTHO05D006392 5.8e-50 201.1 98 88.8
C07p08190 Brassica napus HOM05D004900 ORTHO05D006392 5.8e-50 201.1 98 88.8
BolC7t41235H Brassica oleracea HOM05D004900 ORTHO05D006392 5.8e-50 201.1 98 88.8
BraA07t28307Z Brassica rapa HOM05D004900 ORTHO05D006392 5.8e-50 201.1 98 88.8
Carub.0003s2939 Capsella rubella HOM05D004900 ORTHO05D006392 5.8e-50 201.1 98 89.8
CARHR105960 Cardamine hirsuta HOM05D004900 ORTHO05D006392 5.8e-50 201.1 98 87.8
Eucgr.I01148 Eucalyptus grandis HOM05D004900 ORTHO05D006392 5.8e-50 201.1 98 89.8
BcaB07g31785 Brassica carinata HOM05D004900 ORTHO05D006392 9.9e-50 200.3 98 89.8
Gohir.A13G040600 Gossypium hirsutum HOM05D004900 ORTHO05D006392 9.9e-50 200.3 98 91.8
Gohir.D13G039300 Gossypium hirsutum HOM05D004900 ORTHO05D006392 9.9e-50 200.3 98 91.8
Gorai.013G044200 Gossypium raimondii HOM05D004900 ORTHO05D006392 9.9e-50 200.3 98 91.8
Lj5A209T83 Lonicera japonica HOM05D004900 ORTHO05D006392 9.9e-50 200.3 98 91.8
Sabra04G0092700 Salix brachista HOM05D004900 ORTHO05D006392 9.9e-50 200.3 98 90.8
Glyma.02G132100 Glycine max HOM05D004900 ORTHO05D006392 1.3e-49 199.9 98 91.8
Glyma.07G212800 Glycine max HOM05D004900 ORTHO05D006392 1.3e-49 199.9 98 91.8
PGR142G1087 Punica granatum HOM05D004900 ORTHO05D006392 1.3e-49 199.9 98 88.8
Sp3g28890 Schrenkiella parvula HOM05D004900 ORTHO05D006392 1.7e-49 199.5 98 88.8
BcaB03g16309 Brassica carinata HOM05D004900 ORTHO05D006392 2.2e-49 199.1 98 86.7
FvH4_2g05960 Fragaria vesca HOM05D004900 ORTHO05D006392 2.2e-49 199.1 98 88.8
FAN24G3555 Fragaria x ananassa HOM05D004900 ORTHO05D006392 2.2e-49 199.1 98 88.8
FAN27G2168 Fragaria x ananassa HOM05D004900 ORTHO05D006392 2.2e-49 199.1 98 88.8
Nitab4.5_0005249g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 2.2e-49 199.1 101 87.1
TPR.G25435 Trifolium pratense HOM05D004900 ORTHO05D006392 2.2e-49 199.1 99 91.9
Aa31LG8G13280 Aethionema arabicum HOM05D004900 ORTHO05D006392 2.9e-49 198.7 98 88.8
Sabra09G0077500 Salix brachista HOM05D004900 ORTHO05D006392 2.9e-49 198.7 98 89.8
Hund02212 Selenicereus undatus HOM05D004900 ORTHO05D006392 2.9e-49 198.7 98 89.8
SEGI_39412 Sequoiadendron giganteum HOM05D004900 ORTHO05D006392 2.9e-49 198.7 98 88.8
RcHm_v2.0_Chr6g0257431 Rosa chinensis HOM05D004900 ORTHO05D006392 3.8e-49 198.4 98 88.8
BcaC04g23043 Brassica carinata HOM05D004900 ORTHO05D006392 6.4e-49 197.6 98 88.8
A09p10810 Brassica napus HOM05D004900 ORTHO05D006392 6.4e-49 197.6 98 88.8
C09p12780 Brassica napus HOM05D004900 ORTHO05D006392 6.4e-49 197.6 98 88.8
BolC9t54165H Brassica oleracea HOM05D004900 ORTHO05D006392 6.4e-49 197.6 98 88.8
BraA09t36723Z Brassica rapa HOM05D004900 ORTHO05D006392 6.4e-49 197.6 98 88.8
Cpa.g.sc62.8 Carica papaya HOM05D004900 ORTHO05D006392 6.4e-49 197.6 98 88.8
Pp3c16_15880 Physcomitrium patens HOM05D004900 ORTHO05D006392 6.4e-49 197.6 98 85.7
Psat7g123960 Pisum sativum HOM05D004900 ORTHO05D006392 6.4e-49 197.6 99 90.9
Sc18g0004090 Simmondsia chinensis HOM05D004900 ORTHO05D006392 8.4e-49 197.2 98 88.8
CDE09G0425 Ceratophyllum demersum HOM05D004900 ORTHO05D006392 1.1e-48 196.8 98 89.8
unitig_0.g85 Utricularia gibba HOM05D004900 ORTHO05D006392 1.1e-48 196.8 98 86.7
Os02g0765900 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 1.4e-48 196.4 101 86.1
Phvul.003G292100 Phaseolus vulgaris HOM05D004900 ORTHO05D006392 1.4e-48 196.4 99 91.9
arahy.Tifrunner.gnm1.ann1.AXQD4Y Arachis hypogaea HOM05D004900 ORTHO05D006392 1.9e-48 196.1 98 89.8
arahy.Tifrunner.gnm1.ann1.X7K798 Arachis hypogaea HOM05D004900 ORTHO05D006392 1.9e-48 196.1 98 89.8
Manes.10G071700 Manihot esculenta HOM05D004900 ORTHO05D006392 2.4e-48 195.7 98 87.8
Nitab4.5_0018347g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 2.4e-48 195.7 98 87.8
Os01g0357100 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 2.4e-48 195.7 98 87.8
Peaxi162Scf00016g01734 Petunia axillaris HOM05D004900 ORTHO05D006392 2.4e-48 195.7 98 87.8
THA.LOC104807271 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 2.4e-48 195.7 98 86.7
SGA_v2.0_scaffold90G27642 Striga asiatica HOM05D004900 ORTHO05D006392 3.2e-48 195.3 98 85.7
THA.LOC104819578 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 3.2e-48 195.3 98 87.8
CAN.G1041.10 Capsicum annuum HOM05D004900 ORTHO05D006392 4.2e-48 194.9 98 87.8
VMungo0251G0630 Vigna mungo HOM05D004900 ORTHO05D006392 4.2e-48 194.9 99 90.9
ClCG05G009960 Citrullus lanatus HOM05D004900 ORTHO05D006392 5.5e-48 194.5 98 87.8
Sed0000080 Sechium edule HOM05D004900 ORTHO05D006392 5.5e-48 194.5 98 85.7
COL.COLO4_32650 Corchorus olitorius HOM05D004900 ORTHO05D006392 7.1e-48 194.1 98 84.7
HanXRQChr09g0259251 Helianthus annuus HOM05D004900 ORTHO05D006392 7.1e-48 194.1 98 85.7
Ah.04g164910 Amaranthus hybridus HOM05D004900 ORTHO05D006392 9.3e-48 193.7 98 86.7
CsaV3_3G018610 Cucumis sativus L. HOM05D004900 ORTHO05D006392 9.3e-48 193.7 98 84.7
Solyc01g108630.3 Solanum lycopersicum HOM05D004900 ORTHO05D006392 1.2e-47 193.4 98 86.7
Sopen01g050850 Solanum pennellii HOM05D004900 ORTHO05D006392 1.2e-47 193.4 98 86.7
PGSC0003DMG400025823 Solanum tuberosum HOM05D004900 ORTHO05D006392 1.2e-47 193.4 98 86.7
MELO3C019505.2 Cucumis melo HOM05D004900 ORTHO05D006392 2.7e-47 192.2 98 84.7
Zm00001eb193660 Zea mays HOM05D004900 ORTHO05D006392 2.7e-47 192.2 98 85.7
Ah.06g184040 Amaranthus hybridus HOM05D004900 ORTHO05D006392 4.6e-47 191.4 98 85.7
SMO200G0071 Selaginella moellendorffii HOM05D004900 ORTHO05D006392 6.0e-47 191.0 98 83.7
AUR62029383 Chenopodium quinoa HOM05D004900 ORTHO05D006392 1.0e-46 190.3 98 84.7
Zm00001eb255880 Zea mays HOM05D004900 ORTHO05D006392 1.0e-46 190.3 98 84.7
Hund22922 Selenicereus undatus HOM05D004900 ORTHO05D006392 1.8e-46 189.5 98 84.7
AUR62034289 Chenopodium quinoa HOM05D004900 ORTHO05D006392 3.9e-46 188.3 98 83.7
EL10Ac4g08164 Beta vulgaris HOM05D004900 ORTHO05D006392 5.1e-46 188.0 98 83.7
AagrBONN_evm.TU.Sc2ySwM_117.307 Anthoceros agrestis HOM05D004900 ORTHO05D006392 3.3e-45 185.3 98 83.7
AagrBONN_evm.TU.Sc2ySwM_117.432 Anthoceros agrestis HOM05D004900 ORTHO05D006392 3.3e-45 185.3 98 83.7
TAR628G1596 Trochodendron aralioides HOM05D004900 ORTHO05D006392 5.6e-45 184.5 103 86.4
Mapoly0183s0004 Marchantia polymorpha HOM05D004900 ORTHO05D006392 1.1e-43 180.3 98 80.6
CBR_g49893 Chara braunii HOM05D004900 ORTHO05D006392 1.3e-41 173.3 98 76.5
Potri.009G101600 Populus trichocarpa HOM05D004900 ORTHO05D006392 4.8e-36 154.8 97 78.4
MCO01G555 Micromonas commoda HOM05D004900 ORTHO05D006392 4.2e-32 141.7 98 63.3
CiPaw.05G006800 Carya illinoinensis HOM05D004900 ORTHO05D006392 1.1e-27 127.1 97 67.0
Nitab4.5_0001401g0030 Nicotiana tabacum HOM05D004900 ORTHO05D006392 8.8e-22 107.5 59 81.4
PRCOL_00002965 Prasinoderma coloniale HOM05D004900 ORTHO05D001484 9.7e-21 104.0 100 48.0
Cre09.g410750 Chlamydomonas reinhardtii HOM05D004900 ORTHO05D006392 3.1e-19 99.0 97 44.3
PRCOL_00004550 Prasinoderma coloniale HOM05D004900 ORTHO05D006392 4.1e-19 98.6 100 46.0
Pp3c6_26360 Physcomitrium patens HOM05D004900 ORTHO05D006392 1.7e-12 76.6 42 76.2


User provided reference genes

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