Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 3.5e-172 608.2 311 100.0
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 1.0e-70 271.2 234 65.4
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 2.1e-47 193.7 238 53.8
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 8.6e-46 188.3 256 47.7
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 9.5e-45 184.9 248 49.2
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 2.2e-41 173.7 252 46.4
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 3.7e-41 172.9 283 45.9
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 1.9e-40 170.6 250 50.4
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 3.2e-40 169.9 254 46.1
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 9.2e-40 168.3 232 51.3
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 1.2e-39 167.9 250 48.4
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 1.6e-39 167.5 176 58.5
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 6.0e-39 165.6 256 45.3
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.0e-38 164.9 233 49.8
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 2.3e-38 163.7 249 44.6
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 5.1e-38 162.5 239 43.5
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 5.1e-38 162.5 262 45.8
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.1e-36 157.1 243 49.4
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 6.2e-36 155.6 243 49.0
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 1.8e-35 154.1 262 45.8
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 2.4e-35 153.7 213 51.2
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 4.0e-35 152.9 264 44.7
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 5.2e-35 152.5 267 42.7
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 5.2e-35 152.5 215 51.6
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 6.8e-35 152.1 249 45.0
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 1.2e-34 151.4 238 42.4
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 1.5e-34 151.0 239 43.9
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 2.0e-34 150.6 243 42.0
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 7.6e-34 148.7 232 46.1
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 9.9e-34 148.3 268 42.9
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 9.9e-34 148.3 275 41.8
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 2.2e-33 147.1 255 42.7
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 5.4e-32 142.5 247 40.5
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.7e-31 140.2 255 41.6
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 6.0e-31 139.0 146 56.8
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 3.0e-30 136.7 256 42.2
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 5.1e-30 136.0 259 42.5
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 1.1e-29 134.8 223 44.8
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 9.6e-29 131.7 222 43.7
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 6.2e-28 129.0 267 42.3
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 1.1e-27 128.3 222 42.3
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 5.3e-27 125.9 255 38.8
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 6.9e-27 125.6 213 44.6
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 5.8e-26 122.5 224 41.5
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.7e-25 120.9 252 39.3
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.7e-25 120.9 233 38.6
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 6.4e-25 119.0 257 39.3
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 5.4e-24 115.9 281 40.9
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 6.0e-23 112.5 244 39.8
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.3e-22 111.3 252 38.5
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.3e-22 111.3 252 38.5
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 5.1e-22 109.4 237 35.9
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.5e-21 107.8 240 35.4
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.5e-21 107.8 223 37.2
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 2.5e-21 107.1 277 37.9
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 2.5e-21 107.1 248 41.1
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 2.5e-21 107.1 264 42.8
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 2.5e-21 107.1 202 41.1
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 3.3e-21 106.7 244 37.7
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 7.3e-21 105.5 213 39.9
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 6.2e-20 102.4 216 36.6
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 6.2e-20 102.4 244 36.5
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 1.4e-19 101.3 247 39.3
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.4e-19 101.3 233 35.2
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 6.9e-19 99.0 237 38.8
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 2.6e-18 97.1 240 36.7
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 3.4e-18 96.7 279 36.6
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 3.4e-18 96.7 249 34.5
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 4.5e-18 96.3 239 37.2
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 1.3e-17 94.7 274 35.4
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 4.2e-16 89.7 182 41.8
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 9.3e-16 88.6 164 43.9
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 2.3e-14 84.0 118 47.5
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 2.3e-14 84.0 232 35.8
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 3.0e-14 83.6 236 34.3
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 4.3e-13 79.7 175 36.0
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 7.4e-13 79.0 205 32.7
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 1.3e-12 78.2 231 33.3
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 1.4e-11 74.7 120 43.3
BolC7t42871H Brassica oleracea HOM05D009961 ORTHO05D008483 6.9e-11 72.4 237 33.3
ATR0712G013 Amborella trichopoda HOM05D007731 ORTHO05D008483 9.0e-11 72.0 203 33.0
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 2.6e-10 70.5 237 33.3
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 3.4e-10 70.1 107 43.0
BraA07t29330Z Brassica rapa HOM05D009961 ORTHO05D008483 1.0e-09 68.6 237 32.9
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.3e-09 68.2 101 45.5
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 1.7e-09 67.8 93 49.5
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 4.9e-09 66.2 235 29.8
BcaC05g25901 Brassica carinata HOM05D009961 ORTHO05D008483 4.9e-09 66.2 234 29.9
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 4.9e-09 66.2 227 31.7
C05p18560 Brassica napus HOM05D009961 ORTHO05D008483 4.9e-09 66.2 234 29.9
BolC5t30567H Brassica oleracea HOM05D009961 ORTHO05D008483 4.9e-09 66.2 234 29.9
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 8.4e-09 65.5 240 31.7
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 8.4e-09 65.5 212 31.6
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 8.4e-09 65.5 95 46.3
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 1.1e-08 65.1 227 31.3
MELO3C003742.2 Cucumis melo HOM05D007731 ORTHO05D008483 1.4e-08 64.7 231 32.0
unitig_749.g13899 Utricularia gibba HOM05D007731 ORTHO05D008483 1.4e-08 64.7 191 33.5
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.2e-08 63.5 90 46.7
Sp1g17840 Schrenkiella parvula HOM05D009961 ORTHO05D008483 3.2e-08 63.5 235 29.4
C07p23380 Brassica napus HOM05D009961 ORTHO05D008483 4.2e-08 63.2 223 32.3
AL1G32880 Arabidopsis lyrata HOM05D009961 ORTHO05D008483 7.1e-08 62.4 238 29.4
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 9.3e-08 62.0 235 30.2
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 9.3e-08 62.0 100 43.0
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 9.3e-08 62.0 92 42.4
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 1.2e-07 61.6 90 47.8
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.2e-07 61.6 89 44.9
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.2e-07 61.6 89 44.9
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.2e-07 61.6 100 41.0
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 1.6e-07 61.2 236 29.7
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.6e-07 61.2 104 45.2
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.6e-07 61.2 163 35.6
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.1e-07 60.8 147 36.1
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 2.1e-07 60.8 103 41.7
HanXRQChr13g0387161 Helianthus annuus HOM05D007731 ORTHO05D008483 3.5e-07 60.1 172 35.5
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 3.5e-07 60.1 101 40.6
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 4.6e-07 59.7 100 41.0
AUR62041477 Chenopodium quinoa HOM05D007731 ORTHO05D008483 6.0e-07 59.3 144 36.8
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 7.9e-07 58.9 89 39.3
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 7.9e-07 58.9 89 39.3
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.0e-06 58.5 105 41.9
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.0e-06 58.5 89 42.7
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 1.3e-06 58.2 174 35.6
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.3e-06 58.2 90 43.3
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.3e-06 58.2 97 41.2
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 1.8e-06 57.8 48 58.3
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 1.8e-06 57.8 101 38.6
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.3e-06 57.4 90 43.3
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.3e-06 57.4 90 43.3
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 3.0e-06 57.0 103 41.7
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 3.9e-06 56.6 100 39.0
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 5.1e-06 56.2 91 41.8
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 5.1e-06 56.2 100 37.0
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 5.1e-06 56.2 100 37.0
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 8.7e-06 55.5 91 40.7
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 8.7e-06 55.5 223 30.9


User provided reference genes

Program Settings