Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 8.3e-199 696.8 345 100.0
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 4.2e-142 508.4 345 74.5
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 3.3e-139 498.8 350 72.6
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 4.6e-133 478.4 348 68.4
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.3e-132 476.9 251 94.0
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 5.9e-128 461.5 351 66.1
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 1.0e-127 460.7 352 66.8
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 8.5e-127 457.6 357 65.5
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 4.2e-126 455.3 362 66.6
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 9.3e-126 454.1 348 67.0
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 7.9e-125 451.1 345 64.9
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 1.8e-124 449.9 321 69.2
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 1.8e-124 449.9 345 64.9
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 5.7e-123 444.9 348 64.9
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 9.7e-123 444.1 345 65.2
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 1.3e-122 443.7 345 64.9
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 1.3e-122 443.7 356 63.2
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 4.8e-122 441.8 358 64.2
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 4.8e-122 441.8 351 62.7
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 6.3e-122 441.4 289 72.3
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 4.1e-121 438.7 330 66.4
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 5.3e-121 438.3 346 65.0
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 2.6e-120 436.0 352 62.5
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 2.6e-120 436.0 345 62.3
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 2.6e-120 436.0 349 64.8
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 1.7e-119 433.3 354 64.1
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 5.0e-119 431.8 348 62.6
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 6.5e-119 431.4 348 63.2
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 8.5e-119 431.0 347 64.6
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 1.4e-118 430.3 353 64.9
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 1.9e-118 429.9 351 63.8
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 2.5e-118 429.5 356 62.1
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 7.2e-118 427.9 287 69.7
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 1.6e-117 426.8 352 64.2
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 2.7e-117 426.0 282 72.3
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 7.9e-117 424.5 312 67.3
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 1.0e-116 424.1 348 61.5
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 1.0e-116 424.1 338 65.4
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 1.0e-116 424.1 352 61.9
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 2.3e-116 422.9 350 62.3
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 1.1e-115 420.6 338 62.7
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 1.5e-115 420.2 297 68.4
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 2.0e-115 419.9 312 66.3
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 5.7e-115 418.3 353 62.3
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 9.7e-115 417.5 362 61.0
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 1.3e-114 417.2 313 65.8
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 2.8e-114 416.0 328 64.6
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 2.8e-114 416.0 313 64.9
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 4.8e-114 415.2 349 62.8
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 1.1e-113 414.1 278 71.6
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 5.3e-113 411.8 349 60.5
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 6.9e-113 411.4 285 70.2
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 1.2e-112 410.6 292 69.5
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 1.2e-112 410.6 343 60.6
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 2.6e-112 409.5 356 58.7
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 3.4e-112 409.1 357 59.4
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.4e-112 409.1 321 62.9
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 4.5e-112 408.7 325 62.8
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 2.2e-111 406.4 317 61.5
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 3.8e-111 405.6 316 63.3
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 3.8e-111 405.6 316 63.3
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 6.5e-111 404.8 316 62.7
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.1e-110 404.1 321 62.3
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 1.1e-110 404.1 345 59.1
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 1.9e-110 403.3 349 58.5
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 3.2e-110 402.5 316 62.3
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 5.5e-110 401.7 316 62.0
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 5.5e-110 401.7 347 60.5
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 5.5e-110 401.7 350 58.9
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 9.4e-110 401.0 291 66.0
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 9.4e-110 401.0 349 57.3
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 2.7e-109 399.4 350 58.9
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 2.7e-109 399.4 351 58.7
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 6.1e-109 398.3 291 66.0
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 3.0e-108 396.0 350 58.9
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 3.9e-108 395.6 325 61.2
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 1.5e-107 393.7 355 57.2
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 2.6e-107 392.9 282 66.0
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 3.3e-107 392.5 350 58.3
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 3.3e-107 392.5 376 56.4
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 1.7e-106 390.2 360 57.2
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 1.7e-106 390.2 316 61.4
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 2.2e-106 389.8 355 56.9
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 3.7e-106 389.0 354 56.2
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 3.7e-106 389.0 354 56.2
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 6.3e-106 388.3 267 66.7
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 1.1e-105 387.5 361 56.2
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 1.8e-105 386.7 263 70.0
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 2.4e-105 386.3 347 57.3
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 4.5e-104 382.1 258 70.9
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 4.5e-104 382.1 327 59.6
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 1.1e-102 377.5 322 61.2
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 1.2e-101 374.0 244 75.0
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 2.6e-99 366.3 300 60.3
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 7.5e-99 364.8 293 60.4
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 7.5e-99 364.8 255 69.4
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 1.0e-95 354.4 244 69.3
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.3e-95 354.0 332 55.7
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 5.5e-94 348.6 254 66.1
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 3.1e-89 332.8 280 58.9
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 5.4e-89 332.0 254 62.2
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 7.0e-89 331.6 239 66.5
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 9.1e-89 331.3 294 58.2
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 2.0e-88 330.1 400 47.0
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 4.5e-88 328.9 225 69.3
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 4.7e-85 318.9 222 68.5
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 3.0e-84 316.2 220 69.5
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 6.4e-74 282.0 198 68.2
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 2.3e-71 273.5 295 49.2
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 1.2e-69 267.7 295 47.5
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.8e-68 263.8 138 91.3
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 8.9e-68 261.5 331 43.2
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.5e-67 260.8 178 74.2
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 3.0e-63 246.5 299 47.5
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.5e-62 243.4 307 43.3
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 7.5e-59 231.9 213 56.3
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 9.2e-57 224.9 305 43.3
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 9.5e-54 214.9 244 45.5
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 1.3e-50 204.5 153 62.1
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.1e-49 201.4 311 39.5
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 5.4e-49 199.1 255 43.5
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 3.9e-47 193.0 305 39.3
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 6.6e-47 192.2 176 55.1
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 9.0e-44 181.8 378 31.7
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 2.0e-43 180.6 297 37.7
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 4.4e-43 179.5 163 60.1
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 8.1e-37 158.7 92 76.1
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 1.4e-36 157.9 322 30.1
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 4.0e-36 156.4 238 37.8
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.0e-35 154.1 155 52.9
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 9.9e-35 151.8 144 58.3
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 1.4e-33 147.9 116 61.2
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 7.9e-24 115.5 329 27.1
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 2.6e-19 100.5 211 32.7
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 5.3e-12 76.3 80 52.5
Cfa024306 Carpinus fangiana HOM05D005585 ORTHO05D006905 3.4e-11 73.6 223 25.1


User provided reference genes

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