Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0395 Trochodendron aralioides HOM05D007776 ORTHO05D009812 5.1e-61 237.7 129 100.0
Nn5g27525 Nelumbo nucifera HOM05D007776 ORTHO05D009812 3.4e-28 128.6 130 53.1
Gohir.D05G288000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 5.7e-20 101.3 125 47.2
Gorai.009G303100 Gossypium raimondii HOM05D007776 ORTHO05D009812 5.7e-20 101.3 125 47.2
Gohir.A05G287000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 4.9e-19 98.2 125 51.2
CANSAT25G0596 Cannabis sativa HOM05D007776 ORTHO05D009812 1.1e-18 97.1 114 49.1
RcHm_v2.0_Chr7g0227891 Rosa chinensis HOM05D007776 ORTHO05D009812 2.0e-17 92.8 121 44.6
Potri.013G107300 Populus trichocarpa HOM05D007776 ORTHO05D009812 5.9e-17 91.3 124 47.6
Prupe.1G555000 Prunus persica HOM05D007776 ORTHO05D009812 5.9e-17 91.3 123 45.5
Dinv41753 Davidia involucrata HOM05D000238 ORTHO05D002999 5.0e-16 88.2 118 48.3
Duzib177G0943 Durio zibethinus HOM05D007776 ORTHO05D009812 8.6e-16 87.4 100 49.0
Manes.02G198100 Manihot esculenta HOM05D007776 ORTHO05D009812 8.6e-16 87.4 111 46.8
Duzib116G0238 Durio zibethinus HOM05D007776 ORTHO05D009812 1.1e-15 87.0 100 63.0
MD15G1406800 Malus domestica HOM05D007776 ORTHO05D009812 2.5e-15 85.9 110 47.3
FAN04G0521 Fragaria x ananassa HOM05D007776 ORTHO05D009812 4.3e-15 85.1 102 51.0
FAN04G1877 Fragaria x ananassa HOM05D007776 ORTHO05D009812 5.6e-15 84.7 100 49.0
Thecc.08G190700 Theobroma cacao HOM05D007776 ORTHO05D009812 7.3e-15 84.3 102 60.8
TWI59G0674 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 1.2e-14 83.6 93 50.5
FvH4_5g31870 Fragaria vesca HOM05D007776 ORTHO05D009812 1.6e-14 83.2 100 48.0
FAN08G2421 Fragaria x ananassa HOM05D007776 ORTHO05D009812 1.6e-14 83.2 100 48.0
PGR042G2621 Punica granatum HOM05D007776 ORTHO05D009812 1.6e-14 83.2 113 45.1
TWI14G0313 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 1.6e-14 83.2 109 46.8
Ciclev10002690m.g Citrus clementina HOM05D007776 ORTHO05D009812 2.1e-14 82.8 123 43.9
FAN18G1270 Fragaria x ananassa HOM05D007776 ORTHO05D009812 6.2e-14 81.3 100 47.0
Cfa012949 Carpinus fangiana HOM05D007776 ORTHO05D009812 3.1e-13 79.0 101 49.5
Haze_21304 Corylus avellana HOM05D007776 ORTHO05D009812 3.1e-13 79.0 108 47.2
Cpa.g.sc507.3 Carica papaya HOM05D007776 ORTHO05D009812 5.2e-13 78.2 121 56.2
Sabra19G0091100 Salix brachista HOM05D007776 ORTHO05D009812 8.9e-13 77.4 109 46.8
Sabra13G0092600 Salix brachista HOM05D007776 ORTHO05D009812 2.0e-12 76.3 121 43.8
THA.LOC104806792 Tarenaya hassleriana HOM05D007776 ORTHO05D009812 2.0e-12 76.3 138 40.6
Ah.05g178510 Amaranthus hybridus HOM05D007776 ORTHO05D009812 2.6e-12 75.9 134 43.3
CiPaw.07G236300 Carya illinoinensis HOM05D007776 ORTHO05D009812 2.6e-12 75.9 119 42.9
CiPaw.05G123100 Carya illinoinensis HOM05D007776 ORTHO05D009812 4.4e-12 75.1 119 42.0
Potri.019G079800 Populus trichocarpa HOM05D007776 ORTHO05D009812 5.8e-12 74.7 115 44.3
CSS0049282 Camellia sinensis var. sinensis HOM05D007776 ORTHO05D009812 7.5e-12 74.3 114 47.4
Sp1g30150 Schrenkiella parvula HOM05D007776 ORTHO05D009812 3.7e-11 72.0 119 39.5
Aa31LG6G8730 Aethionema arabicum HOM05D007776 ORTHO05D009812 6.4e-11 71.2 113 44.2
Sed0008767 Sechium edule HOM05D007776 ORTHO05D009812 8.3e-11 70.9 102 42.2
QL02p026198 Quercus lobata HOM05D007776 ORTHO05D009812 1.4e-10 70.1 99 58.6
AL1G50270 Arabidopsis lyrata HOM05D007776 ORTHO05D009812 1.9e-10 69.7 103 43.7
Carub.0001s3303 Capsella rubella HOM05D007776 ORTHO05D009812 1.9e-10 69.7 121 39.7
CARHR034200 Cardamine hirsuta HOM05D007776 ORTHO05D009812 1.9e-10 69.7 100 42.0
Sopen01g034790 Solanum pennellii HOM05D007776 ORTHO05D009812 2.4e-10 69.3 117 40.2
VMungo1080G1686 Vigna mungo HOM05D007776 ORTHO05D009812 2.4e-10 69.3 127 38.6
AT1G35430 Arabidopsis thaliana HOM05D007776 ORTHO05D009812 4.1e-10 68.6 119 38.7
BcaC08g43737 Brassica carinata HOM05D007776 ORTHO05D009812 9.2e-10 67.4 100 43.0
Psat5g210040 Pisum sativum HOM05D007776 ORTHO05D009812 1.6e-09 66.6 112 42.0
C06p11140 Brassica napus HOM05D007776 ORTHO05D009812 2.7e-09 65.9 100 42.0
BolC6t36249H Brassica oleracea HOM05D007776 ORTHO05D009812 2.7e-09 65.9 100 42.0
BraA09t38716Z Brassica rapa HOM05D007776 ORTHO05D009812 2.7e-09 65.9 100 42.0
Solyc01g087860.2 Solanum lycopersicum HOM05D007776 ORTHO05D009812 2.7e-09 65.9 120 38.3
Ca_14480_v3 Cicer arietinum L. HOM05D007776 ORTHO05D009812 3.5e-09 65.5 113 41.6
A09p31800 Brassica napus HOM05D007776 ORTHO05D009812 4.6e-09 65.1 100 41.0
TPR.G27845 Trifolium pratense HOM05D000479 ORTHO05D009812 4.6e-09 65.1 102 47.1
PGSC0003DMG400006837 Solanum tuberosum HOM05D007776 ORTHO05D009812 7.8e-09 64.3 110 39.1
Lsat_1_v5_gn_3_48301 Lactuca sativa HOM05D007776 ORTHO05D009812 2.3e-08 62.8 121 34.7
Lalb_Chr25g0282901 Lupinus albus HOM05D007776 ORTHO05D009812 2.3e-08 62.8 110 40.0
Rhsim12G0006900 Rhododendron simsii HOM05D007776 ORTHO05D009812 3.0e-08 62.4 99 44.4
Medtr0045s0130 Medicago truncatula HOM05D007776 ORTHO05D009812 6.6e-08 61.2 112 38.4
COL.COLO4_25869 Corchorus olitorius HOM05D007776 ORTHO05D009812 1.1e-07 60.5 44 65.9
Migut.C01313 Erythranthe guttata HOM05D007776 ORTHO05D009812 1.5e-07 60.1 128 34.4
Thhalv10029064m.g Eutrema salsugineum HOM05D007776 ORTHO05D009812 1.5e-07 60.1 127 35.4
MD08G1218400 Malus domestica HOM05D007776 ORTHO05D009812 3.3e-07 58.9 99 42.4
C03p34420 Brassica napus HOM05D007776 ORTHO05D009812 7.3e-07 57.8 105 38.1
BolC3t15751H Brassica oleracea HOM05D007776 ORTHO05D009812 7.3e-07 57.8 105 38.1
Phvul.005G023800 Phaseolus vulgaris HOM05D007776 ORTHO05D009812 7.3e-07 57.8 99 38.4
Lj3g0020626 Lotus japonicus HOM05D007776 ORTHO05D009812 1.6e-06 56.6 99 44.4
BcaC01g04727 Brassica carinata HOM05D007776 ORTHO05D009812 3.6e-06 55.5 105 37.1
EL10Ac1g00128 Beta vulgaris HOM05D007776 ORTHO05D009812 4.7e-06 55.1 114 48.2
BcaB01g02801 Brassica carinata HOM05D007776 ORTHO05D009812 4.7e-06 55.1 120 34.2
ClCG11G008540 Citrullus lanatus HOM05D007776 ORTHO05D009812 4.7e-06 55.1 108 37.0
HanXRQChr05g0130261 Helianthus annuus HOM05D007776 ORTHO05D009812 8.1e-06 54.3 124 32.3
SalBow7G1484 Salvia bowleyana HOM05D007776 ORTHO05D009812 8.1e-06 54.3 96 39.6


User provided reference genes

Program Settings