Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 6.4e-91 337.4 173 100.0
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.5e-76 289.7 166 88.0
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 9.6e-71 270.4 173 80.9
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.6e-70 269.6 170 81.8
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.6e-70 268.5 170 82.4
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 1.4e-66 256.5 191 73.8
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.1e-63 246.9 193 71.5
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.9e-63 246.1 175 73.7
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 3.3e-63 245.4 174 74.7
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 4.3e-63 245.0 171 73.1
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 4.3e-63 245.0 171 73.1
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 9.6e-63 243.8 171 74.3
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.3e-62 243.4 176 75.6
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 2.8e-62 242.3 175 73.1
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 3.7e-62 241.9 183 69.9
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 2.4e-61 239.2 173 72.3
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 5.3e-61 238.0 193 67.9
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 5.3e-61 238.0 187 69.0
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.0e-60 236.1 171 71.3
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.5e-60 235.0 175 72.0
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 5.8e-60 234.6 187 69.0
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.7e-59 233.0 174 70.7
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.7e-59 233.0 176 72.2
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.7e-59 233.0 169 74.0
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 2.2e-59 232.6 178 72.5
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 2.2e-59 232.6 132 87.9
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 2.2e-59 232.6 170 71.8
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 2.9e-59 232.3 201 63.7
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.8e-59 231.9 173 72.8
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 4.9e-59 231.5 188 67.6
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 4.9e-59 231.5 169 71.6
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 6.5e-59 231.1 176 68.8
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 6.5e-59 231.1 178 70.8
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.1e-58 230.3 171 69.6
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.1e-58 230.3 179 69.8
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.4e-58 229.9 184 67.9
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.4e-58 229.9 184 67.9
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.9e-58 229.6 200 66.5
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 2.5e-58 229.2 173 71.7
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.2e-58 228.8 181 69.6
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 3.2e-58 228.8 169 72.2
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 3.2e-58 228.8 173 71.7
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 4.2e-58 228.4 176 72.7
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 5.5e-58 228.0 178 69.7
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 7.1e-58 227.6 181 69.1
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 7.1e-58 227.6 178 69.7
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 1.6e-57 226.5 187 66.8
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.5e-57 225.3 173 70.5
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 1.3e-56 223.4 180 65.6
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.8e-56 223.0 169 69.2
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.8e-56 223.0 177 66.1
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.8e-56 223.0 173 69.4
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 2.3e-56 222.6 174 68.4
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 2.3e-56 222.6 170 69.4
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 2.3e-56 222.6 184 65.8
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 3.9e-56 221.9 176 68.8
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.9e-56 221.9 173 68.8
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 3.9e-56 221.9 178 66.3
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 5.1e-56 221.5 176 68.8
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 5.1e-56 221.5 192 63.5
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.5e-55 219.9 173 69.9
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.9e-55 219.5 172 66.9
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-55 219.2 173 68.2
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-55 219.2 173 68.2
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 3.3e-55 218.8 169 68.6
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.7e-55 218.0 175 69.1
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 7.4e-55 217.6 154 75.3
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.8e-54 215.7 172 65.1
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 3.7e-54 215.3 171 67.3
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.7e-54 215.3 204 59.8
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.8e-54 214.9 172 66.9
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 4.8e-54 214.9 158 74.1
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 4.8e-54 214.9 173 68.8
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 6.2e-54 214.5 170 65.9
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 8.2e-54 214.2 172 66.9
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 8.2e-54 214.2 172 66.9
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.1e-53 213.8 169 63.9
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.1e-53 212.2 176 65.9
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.1e-53 211.8 172 65.1
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 6.9e-53 211.1 171 66.7
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 9.0e-53 210.7 175 64.0
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 2.6e-52 209.1 179 64.8
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 2.6e-52 209.1 179 64.8
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 2.6e-52 209.1 179 64.8
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.7e-51 206.5 180 63.9
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.7e-51 206.5 203 58.1
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 5.0e-51 204.9 181 65.7
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.4e-50 203.4 178 64.0
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.9e-50 203.0 175 64.6
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.9e-50 203.0 178 64.0
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.9e-50 203.0 171 66.1
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.5e-50 202.6 175 63.4
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 2.5e-50 202.6 190 58.9
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.5e-50 202.6 120 85.0
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 4.2e-50 201.8 181 62.4
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 5.5e-50 201.4 177 63.3
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 5.5e-50 201.4 133 75.9
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 7.1e-50 201.1 174 64.9
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.1e-49 199.5 174 64.4
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 3.5e-49 198.7 180 62.8
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 7.9e-49 197.6 191 62.3
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 1.0e-48 197.2 184 62.0
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 1.8e-48 196.4 177 62.1
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 3.0e-48 195.7 187 57.8
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.9e-47 193.0 187 59.4
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.8e-46 189.1 179 59.8
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 3.7e-46 188.7 178 59.6
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 8.2e-46 187.6 175 60.0
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 8.2e-46 187.6 175 60.0
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 4.1e-45 185.3 169 58.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 7.7e-44 181.0 175 58.9
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.3e-43 180.3 172 60.5
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.1e-42 177.2 157 65.6
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.4e-42 176.8 169 59.2
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.7e-41 172.6 138 64.5
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.7e-39 164.9 175 57.1
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 2.2e-38 162.9 138 66.7
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 8.2e-38 161.0 188 48.9
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 8.2e-38 161.0 188 52.1
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 6.9e-37 157.9 91 85.7
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 5.9e-36 154.8 148 60.8
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 6.5e-35 151.4 124 71.0
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 4.2e-34 148.7 130 59.2
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.0e-32 144.1 112 65.2
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 2.6e-31 139.4 101 68.3
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 3.3e-31 139.0 102 66.7
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 5.7e-31 138.3 101 67.3
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 2.8e-30 136.0 102 64.7
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 3.7e-30 135.6 109 61.5
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.1e-29 134.0 124 57.3
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.0e-28 129.8 85 77.6
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 2.2e-27 126.3 100 67.0
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 3.8e-27 125.6 101 65.3
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 5.5e-26 121.7 119 57.1
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.2e-25 120.6 92 60.9
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.6e-25 120.2 171 46.8
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.4e-24 117.1 115 55.7
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.3e-23 112.5 101 57.4
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.7e-22 110.2 91 63.7
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 8.2e-22 107.8 98 56.1
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 2.4e-21 106.3 89 61.8
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 4.1e-21 105.5 99 54.5
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.5e-20 102.1 88 65.9
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.5e-18 97.1 73 61.6
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.9e-18 96.7 98 46.9
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.1e-17 93.2 64 73.4
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 2.1e-17 93.2 123 51.2
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 6.1e-17 91.7 102 45.1
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 8.0e-17 91.3 81 59.3
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.0e-16 90.9 67 68.7
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.4e-16 90.5 94 53.2
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.6e-12 77.0 128 34.4


User provided reference genes

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