Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 1.9e-198 695.7 349 100.0
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.9e-102 376.7 372 57.5
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 4.7e-101 372.1 354 57.9
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 5.8e-99 365.2 353 58.1
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 9.9e-99 364.4 353 57.2
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 9.9e-99 364.4 353 58.1
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 8.3e-98 361.3 370 55.1
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 4.6e-96 355.5 359 56.8
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 2.5e-94 349.7 360 55.8
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 3.6e-93 345.9 367 53.7
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 4.9e-90 335.5 356 53.4
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 6.4e-90 335.1 363 54.8
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.6e-88 330.5 356 55.3
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.6e-88 328.9 367 52.3
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 6.0e-88 328.6 368 51.4
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 7.8e-88 328.2 361 52.6
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 7.8e-88 328.2 352 52.6
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 2.3e-87 326.6 353 55.8
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 2.3e-87 326.6 367 51.8
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 5.1e-87 325.5 353 52.7
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 6.6e-87 325.1 365 51.8
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 4.3e-86 322.4 350 53.1
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.2e-85 320.9 364 52.5
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.2e-85 320.9 362 52.2
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 3.6e-85 319.3 356 52.0
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 4.7e-85 318.9 351 53.6
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.1e-84 317.8 363 52.9
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 1.4e-84 317.4 365 52.6
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 4.0e-84 315.8 355 51.8
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.4e-83 312.4 344 51.7
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 2.1e-80 303.5 336 54.8
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.7e-80 303.1 356 52.0
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.7e-80 303.1 356 52.0
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.3e-77 294.3 355 49.3
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 2.8e-77 293.1 370 49.2
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 3.1e-76 289.7 355 47.9
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 4.0e-76 289.3 353 49.9
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 4.0e-76 289.3 365 51.0
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 9.0e-76 288.1 350 50.0
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 7.6e-75 285.0 366 50.3
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 2.9e-74 283.1 368 49.5
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.9e-73 280.4 358 48.6
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.6e-72 277.3 356 48.9
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 7.9e-72 275.0 372 48.7
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.0e-71 274.6 367 49.9
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 1.3e-71 274.2 354 47.5
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 1.3e-71 274.2 376 46.0
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 3.0e-71 273.1 361 48.2
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.1e-70 271.2 361 52.1
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 7.4e-70 268.5 354 47.7
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 6.9e-68 261.9 360 49.2
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 6.9e-68 261.9 344 50.0
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 2.0e-67 260.4 355 48.2
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 4.5e-67 259.2 375 46.7
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 3.8e-66 256.1 374 46.8
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 1.4e-65 254.2 364 45.6
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 3.2e-65 253.1 364 45.3
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 3.2e-65 253.1 364 45.1
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.8e-63 247.3 346 45.4
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 2.5e-62 243.4 365 44.4
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 4.3e-62 242.7 342 45.9
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 7.4e-62 241.9 358 45.0
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 2.1e-61 240.4 358 44.4
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.8e-61 240.0 354 42.9
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.4e-60 237.7 346 43.9
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 2.4e-60 236.9 319 44.8
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 4.0e-60 236.1 429 39.9
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 9.0e-60 235.0 377 43.0
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 4.5e-59 232.6 357 40.9
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-58 231.1 364 42.9
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.3e-58 231.1 367 42.8
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 2.2e-58 230.3 358 41.6
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.2e-58 230.3 357 42.6
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 2.9e-58 229.9 385 40.5
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 4.9e-58 229.2 350 43.4
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 1.4e-57 227.6 361 40.4
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.4e-57 227.6 358 43.9
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.9e-57 227.3 355 41.7
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.5e-57 226.9 357 42.3
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.5e-57 226.9 350 41.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 7.1e-57 225.3 358 41.6
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 9.3e-57 224.9 381 42.8
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 9.3e-57 224.9 351 42.2
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.6e-56 224.2 353 42.2
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.6e-56 224.2 363 41.9
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 3.5e-56 223.0 357 43.1
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 4.6e-56 222.6 358 41.3
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.0e-56 222.2 358 42.5
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 6.7e-55 218.8 354 44.6
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 6.7e-55 218.8 353 41.1
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 8.7e-55 218.4 352 44.6
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.9e-54 217.2 266 51.5
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 5.7e-54 215.7 366 41.3
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.8e-52 210.7 346 42.2
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 2.4e-52 210.3 373 41.3
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 2.4e-52 210.3 189 61.9
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 4.1e-52 209.5 338 42.6
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 9.0e-52 208.4 366 41.3
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 2.0e-51 207.2 355 40.0
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 4.5e-51 206.1 420 36.2
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 1.0e-50 204.9 356 41.0
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 2.7e-48 196.8 381 38.3
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 2.7e-48 196.8 347 39.2
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 8.7e-47 191.8 407 35.9
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.1e-46 191.4 351 38.7
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 4.1e-44 183.0 273 44.3
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.0e-43 180.6 255 48.6
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 2.0e-43 180.6 352 37.5
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.3e-42 177.9 251 47.4
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 2.2e-42 177.2 203 50.2
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 6.5e-42 175.6 357 35.9
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 3.6e-40 169.9 364 36.0
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 7.9e-40 168.7 198 49.0
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.4e-39 167.9 182 52.2
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 1.8e-39 167.5 183 49.2
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 2.3e-39 167.2 347 35.4
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 4.8e-37 159.5 269 41.3
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 6.3e-37 159.1 342 37.1
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.4e-36 157.9 329 38.3
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 1.5e-35 154.5 112 70.5
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 2.9e-34 150.2 191 46.1
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 6.5e-34 149.1 137 53.3
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 2.5e-33 147.1 352 30.7
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.8e-28 131.0 197 40.6
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 5.3e-28 129.4 190 42.1
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.2e-22 111.7 353 31.2
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.1e-20 105.1 168 35.7
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.9e-19 99.4 224 33.0
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 2.2e-18 97.4 155 36.1
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.1e-17 95.1 160 36.2
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.9e-17 94.4 162 35.8
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 4.2e-17 93.2 345 28.1
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 9.4e-17 92.0 167 33.5
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.6e-16 90.1 168 33.9
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 6.8e-15 85.9 220 33.6
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.3e-10 71.6 105 45.7
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.7e-10 71.2 172 31.4
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 2.3e-10 70.9 172 31.4
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 2.3e-10 70.9 172 31.4
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 2.3e-10 70.9 172 31.4
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 2.3e-10 70.9 172 31.4
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 6.5e-10 69.3 164 29.9
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 1.1e-09 68.6 352 23.0
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-09 68.2 353 25.5
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 1.9e-09 67.8 95 45.3
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 2.5e-09 67.4 88 39.8
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 4.2e-09 66.6 86 51.2
MBI11_g00913_MAGBIO Magnolia biondii HOM05D001735 ORTHO05D001640 7.2e-09 65.9 163 32.5
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 7.2e-09 65.9 176 30.1
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 1.6e-08 64.7 173 28.9
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 1.6e-08 64.7 354 24.9
Dinv04851 Davidia involucrata HOM05D001735 ORTHO05D001640 6.1e-08 62.8 163 29.4
Ciclev10021486m.g Citrus clementina HOM05D001735 ORTHO05D001640 1.0e-07 62.0 169 29.6
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 1.8e-07 61.2 165 27.3
CSS0016125 Camellia sinensis var. sinensis HOM05D001735 ORTHO05D001640 3.0e-07 60.5 166 27.7
Atru.chr9.1025 Acer truncatum HOM05D001735 ORTHO05D001640 6.8e-07 59.3 353 25.5
Dinv11099 Davidia involucrata HOM05D001735 ORTHO05D001640 6.8e-07 59.3 349 25.2
Peaxi162Scf00089g00038 Petunia axillaris HOM05D001735 ORTHO05D001640 6.8e-07 59.3 346 26.3
PGR142G1773 Punica granatum HOM05D001735 ORTHO05D001640 8.9e-07 58.9 153 31.4
SMO367G1253 Selaginella moellendorffii HOM05D005715 ORTHO05D007160 1.2e-06 58.5 213 27.2
Solyc03g111100.1 Solanum lycopersicum HOM05D001735 ORTHO05D001640 1.5e-06 58.2 162 31.5
Nitab4.5_0001664g0080 Nicotiana tabacum HOM05D001735 ORTHO05D001640 3.4e-06 57.0 166 30.7
PGSC0003DMG400015196 Solanum tuberosum HOM05D001735 ORTHO05D001640 3.4e-06 57.0 163 32.5
Rhsim12G0172700 Rhododendron simsii HOM05D001735 ORTHO05D001640 4.4e-06 56.6 183 25.1
CAN.G352.44 Capsicum annuum HOM05D001735 ORTHO05D001640 5.7e-06 56.2 162 29.6
Lj5C98T5 Lonicera japonica HOM05D001735 ORTHO05D001640 5.7e-06 56.2 157 29.9
Cpa.g.sc4.106 Carica papaya HOM05D001735 ORTHO05D001640 7.5e-06 55.8 163 26.4
CDE04G1528 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 7.5e-06 55.8 159 25.8
Sopen03g030250 Solanum pennellii HOM05D001735 ORTHO05D001640 7.5e-06 55.8 164 31.7


User provided reference genes

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