Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.3e-230 802.0 425 100.0
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 1.1e-171 607.1 431 77.3
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 5.8e-170 601.3 429 77.4
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 5.8e-170 601.3 420 79.0
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 8.4e-169 597.4 423 77.8
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 4.2e-168 595.1 426 76.5
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 3.0e-166 589.0 425 76.2
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 5.6e-165 584.7 422 76.3
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 6.9e-163 577.8 422 75.4
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 9.0e-163 577.4 413 76.8
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.2e-162 577.0 424 75.2
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.8e-162 574.7 429 74.8
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 1.1e-160 570.5 421 76.2
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.1e-160 570.5 424 75.0
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 4.2e-160 568.5 420 74.5
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.2e-160 568.5 429 74.6
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 7.1e-160 567.8 427 73.3
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.2e-159 567.0 424 74.8
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.6e-159 566.6 429 74.6
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.6e-159 565.1 429 74.4
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.8e-158 563.1 421 73.4
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 3.0e-158 562.4 422 73.5
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 8.7e-158 560.8 420 74.3
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.5e-157 560.1 416 73.8
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 2.5e-157 559.3 420 73.8
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.3e-157 558.5 423 72.1
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 5.7e-157 558.1 423 72.8
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 9.7e-157 557.4 448 72.1
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 1.3e-156 557.0 450 69.3
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 6.3e-156 554.7 419 74.5
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 1.4e-155 553.5 429 72.5
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 3.1e-155 552.4 414 73.7
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 5.9e-154 548.1 422 73.7
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.8e-153 545.4 423 72.3
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 1.4e-152 543.5 473 66.2
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.6e-151 540.0 431 73.8
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 4.6e-151 538.5 431 72.4
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 6.7e-150 534.6 418 72.2
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.9e-149 533.1 433 71.4
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.9e-149 533.1 420 69.8
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 9.7e-149 530.8 371 79.0
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 3.7e-148 528.9 420 71.9
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 4.8e-148 528.5 421 69.8
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.2e-146 523.9 419 70.4
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 4.5e-146 521.9 424 68.4
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.5e-146 521.9 429 69.7
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 2.2e-145 519.6 437 69.8
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 2.2e-145 519.6 420 69.3
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 2.9e-145 519.2 419 71.8
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 8.5e-145 517.7 430 69.5
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.2e-143 513.8 419 70.4
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 2.0e-141 506.5 413 70.7
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 2.6e-141 506.1 436 67.4
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.6e-141 506.1 503 62.0
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 5.7e-141 505.0 451 64.1
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 7.4e-141 504.6 414 70.5
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 7.4e-141 504.6 371 75.5
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.3e-140 503.8 415 69.6
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 3.8e-137 492.3 413 70.2
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.1e-136 490.7 416 69.2
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.9e-136 490.0 421 67.5
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 4.2e-136 488.8 425 67.8
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 7.2e-136 488.0 283 91.2
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.2e-135 487.3 424 65.8
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 8.8e-134 481.1 420 69.0
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 5.7e-133 478.4 422 68.5
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 9.7e-133 477.6 422 66.8
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 6.3e-132 474.9 423 66.7
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 2.4e-131 473.0 415 67.0
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.6e-130 469.5 417 64.0
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 4.5e-130 468.8 421 66.7
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 5.9e-130 468.4 417 63.8
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 8.5e-129 464.5 411 66.4
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.5e-128 463.0 419 65.9
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.2e-128 462.2 425 62.6
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 7.2e-128 461.5 418 65.8
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 8.0e-127 458.0 426 65.0
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.4e-126 457.2 416 66.6
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.8e-126 456.8 428 65.2
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 3.0e-126 456.1 422 64.9
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 8.8e-126 454.5 423 64.5
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.4e-123 447.2 397 66.5
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 4.1e-123 445.7 416 64.2
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.2e-122 444.1 401 65.3
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 3.5e-122 442.6 417 63.3
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 7.7e-122 441.4 403 65.0
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 8.5e-121 438.0 428 61.7
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 3.2e-120 436.0 426 62.4
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 4.2e-120 435.6 299 80.6
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 8.0e-119 431.4 401 64.3
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 8.0e-119 431.4 374 65.0
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 4.0e-118 429.1 422 62.1
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 5.7e-117 425.2 462 58.0
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 3.7e-116 422.5 425 60.9
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 3.7e-116 422.5 424 62.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 4.8e-116 422.2 371 65.8
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 3.8e-113 412.5 398 61.1
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 1.9e-112 410.2 393 63.1
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 1.9e-112 410.2 393 63.1
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 7.2e-112 408.3 432 60.0
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 2.3e-110 403.3 418 59.3
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 5.7e-109 398.7 360 63.3
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 3.5e-106 389.4 313 70.9
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.0e-105 387.9 424 58.7
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 1.6e-103 380.6 433 59.8
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 3.1e-102 376.3 413 56.4
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 2.2e-100 370.2 377 57.6
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 5.4e-99 365.5 452 53.1
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 9.8e-93 344.7 421 52.3
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-92 344.4 423 55.1
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.6e-90 337.4 326 61.7
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 1.3e-89 334.3 307 65.5
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 5.1e-89 332.4 261 72.0
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 2.4e-83 313.5 265 69.4
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.1e-82 310.5 270 67.4
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 4.7e-79 299.3 270 68.9
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 4.9e-76 289.3 271 63.1
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 6.4e-76 288.9 344 54.1
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 9.0e-70 268.5 274 62.4
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 4.4e-69 266.2 412 47.3
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 4.4e-69 266.2 193 73.6
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 7.6e-69 265.4 274 62.0
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.9e-67 260.8 270 59.6
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 4.2e-67 259.6 442 42.1
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 1.2e-66 258.1 275 60.4
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.7e-65 254.2 341 51.3
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 1.9e-64 250.8 271 62.0
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 9.9e-61 238.4 268 57.8
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 1.7e-60 237.7 262 54.6
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 9.6e-56 221.9 443 39.5
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 8.1e-55 218.8 196 63.3
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.5e-53 214.5 184 66.3
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.4e-53 213.4 432 38.2
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.7e-52 211.1 136 77.2
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 8.4e-52 208.8 267 51.3
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-51 208.4 135 77.0
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 5.6e-48 196.1 182 64.3
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 4.8e-47 193.0 413 40.9
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 6.1e-42 176.0 138 71.0
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.6e-39 167.9 135 65.2
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.8e-38 164.5 147 65.3
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 2.6e-37 160.6 469 33.7
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 1.7e-31 141.4 139 56.8
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 3.7e-23 113.6 125 58.4
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 4.2e-19 100.1 232 40.9
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 7.7e-13 79.3 186 34.4
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 2.2e-07 61.2 37 75.7
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 1.8e-06 58.2 108 38.9
BolC8t52058H Brassica oleracea HOM05D005050 ORTHO05D006198 7.0e-06 56.2 35 74.3
SEGI_11287 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 9.1e-06 55.8 52 50.0
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 9.1e-06 55.8 33 75.8


User provided reference genes

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