Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.2e-166 589.7 290 100.0
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 5.4e-151 537.7 289 91.3
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.8e-136 488.4 288 83.3
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 7.1e-135 484.2 288 82.6
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.0e-133 480.3 288 80.6
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.9e-132 476.1 289 78.5
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.3e-131 473.4 289 78.9
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.6e-131 473.0 289 79.2
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.6e-131 473.0 289 79.2
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 4.8e-131 471.5 287 80.5
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.4e-130 469.9 289 79.9
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.1e-130 468.8 289 79.6
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 5.8e-129 464.5 289 77.5
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 7.6e-129 464.2 287 79.1
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 9.9e-129 463.8 289 77.5
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.3e-128 463.4 289 78.2
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 1.3e-128 463.4 289 78.2
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 2.9e-128 462.2 289 78.5
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 3.8e-128 461.8 325 72.6
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 4.9e-128 461.5 290 77.6
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 8.4e-128 460.7 291 77.3
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.4e-127 459.9 289 76.5
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.4e-127 459.9 289 77.5
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.9e-127 459.5 293 76.1
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 2.4e-127 459.1 287 78.4
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 5.4e-127 458.0 290 76.2
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 7.1e-127 457.6 288 77.1
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.2e-126 456.8 291 76.6
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 1.2e-126 456.8 291 76.6
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.7e-126 455.7 287 77.0
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.0e-125 453.8 289 76.8
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.3e-125 453.4 286 78.0
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.7e-125 453.0 287 76.3
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.0e-125 452.2 289 77.9
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 6.6e-125 451.1 289 75.4
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 6.6e-125 451.1 287 75.3
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 8.7e-125 450.7 298 73.5
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.5e-124 449.9 289 76.8
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.5e-124 449.9 288 76.0
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.9e-124 449.5 287 75.6
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 1.9e-124 449.5 290 77.6
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 5.6e-124 448.0 288 74.3
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.6e-124 448.0 287 75.6
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 9.6e-124 447.2 299 74.2
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.3e-123 446.8 287 75.3
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 1.6e-123 446.4 286 75.5
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.8e-123 445.7 287 74.2
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 2.8e-123 445.7 287 76.0
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 2.8e-123 445.7 286 75.9
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 3.6e-123 445.3 241 88.8
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 4.8e-123 444.9 288 76.0
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 6.2e-123 444.5 289 74.7
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 8.1e-123 444.1 289 75.4
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.1e-122 443.7 289 75.8
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.4e-122 443.4 285 74.4
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.4e-122 443.4 282 76.6
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.8e-122 443.0 289 74.4
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 2.4e-122 442.6 285 75.1
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 3.1e-122 442.2 288 74.0
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 3.1e-122 442.2 288 74.0
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 3.1e-122 442.2 289 72.3
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 1.5e-121 439.9 328 68.6
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.5e-121 439.9 288 73.3
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 2.0e-121 439.5 288 75.0
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.3e-120 436.8 288 73.6
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.7e-120 436.4 288 72.6
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 2.9e-120 435.6 290 73.8
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 3.8e-120 435.3 288 74.3
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 6.4e-120 434.5 255 82.4
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 8.4e-120 434.1 292 74.7
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 5.5e-119 431.4 287 74.2
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 7.1e-119 431.0 288 72.2
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.2e-118 430.3 285 73.7
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.1e-118 429.5 288 72.9
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 2.7e-118 429.1 299 71.2
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 4.6e-118 428.3 288 72.9
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 6.0e-118 427.9 288 72.6
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 7.9e-118 427.6 288 72.6
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 1.8e-117 426.4 288 71.9
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.9e-117 425.2 327 68.2
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.9e-117 425.2 327 68.2
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 5.1e-117 424.9 255 80.4
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.1e-116 423.7 288 70.5
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.1e-116 423.7 288 71.9
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 1.9e-116 422.9 293 70.3
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.5e-116 422.5 289 72.7
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.6e-115 419.9 288 70.1
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 2.1e-115 419.5 288 71.9
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 8.1e-115 417.5 288 69.8
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 1.4e-114 416.8 289 71.3
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.4e-114 416.8 288 71.5
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 1.4e-114 416.8 288 71.5
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 4.0e-114 415.2 292 72.3
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 4.0e-114 415.2 261 77.8
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 9.0e-114 414.1 292 69.5
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.5e-113 413.3 285 71.2
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.6e-113 412.5 288 71.2
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 5.8e-113 411.4 286 70.3
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 3.8e-112 408.7 303 68.0
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 3.8e-112 408.7 289 71.3
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 5.7e-108 394.8 255 74.5
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 1.6e-107 393.3 288 66.3
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 8.2e-107 391.0 282 67.4
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 2.4e-106 389.4 256 75.0
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 5.3e-106 388.3 229 82.1
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.0e-104 384.0 256 73.4
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.2e-104 382.9 287 66.9
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 5.5e-103 378.3 283 66.4
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 9.7e-100 367.5 285 64.6
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 8.2e-99 364.4 208 83.7
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 9.0e-98 360.9 241 71.4
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.2e-97 360.5 259 69.9
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.4e-95 353.6 286 63.3
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.8e-91 339.3 286 60.8
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 9.1e-90 334.3 291 57.4
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 8.8e-85 317.8 285 57.9
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 4.4e-84 315.5 280 56.8
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 4.8e-83 312.0 281 53.7
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 1.4e-82 310.5 238 63.0
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.8e-77 293.5 229 68.1
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 2.9e-72 276.2 171 77.2
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 8.0e-70 268.1 188 68.6
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 4.1e-58 229.2 300 46.7
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 6.8e-53 211.8 266 42.9
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.4e-50 202.2 152 68.4
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 7.8e-49 198.4 130 71.5
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 7.3e-47 191.8 276 39.5
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 7.8e-41 171.8 152 59.2
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 7.3e-39 165.2 154 57.1
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 2.8e-38 163.3 152 57.2
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 8.3e-35 151.8 114 62.3
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.4e-34 151.0 139 58.3
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 2.3e-32 143.7 171 46.8
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 2.3e-29 133.7 368 28.5
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 5.2e-29 132.5 94 70.2
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.6e-28 130.2 266 30.5
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 4.9e-27 125.9 82 72.0
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 3.9e-24 116.3 85 70.6
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.5e-23 114.4 92 65.2
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 2.4e-21 107.1 61 77.0
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.0e-21 106.3 106 51.9
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 6.0e-17 92.4 70 65.7
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 6.0e-17 92.4 141 41.8
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.3e-16 91.3 60 71.7
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.7e-16 90.9 67 67.2
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.3e-15 86.7 215 32.6
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.6e-15 85.1 80 52.5
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.3e-14 84.7 83 54.2
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.6e-14 84.3 80 52.5
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.4e-13 81.3 189 30.2
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 4.0e-13 79.7 56 66.1
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 6.9e-13 79.0 92 46.7
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 6.9e-13 79.0 109 45.0
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 9.0e-13 78.6 88 48.9
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 9.0e-13 78.6 88 48.9
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 1.2e-12 78.2 92 45.7
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.0e-12 77.4 83 50.6
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 3.2e-10 70.1 122 41.0
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.5e-09 66.6 42 76.2
Actinidia34391 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.3e-07 59.7 46 60.9


User provided reference genes

Program Settings