Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 6.9e-106 387.5 223 100.0
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 3.7e-99 365.2 223 96.0
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 1.4e-98 363.2 223 92.8
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 5.3e-98 361.3 223 92.4
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.2e-97 360.1 223 94.6
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 2.0e-97 359.4 222 94.1
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 2.0e-97 359.4 223 93.3
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 2.6e-97 359.0 223 93.7
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.6e-97 359.0 223 93.7
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.6e-97 359.0 223 93.7
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 4.5e-97 358.2 223 94.2
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 5.9e-97 357.8 223 94.2
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 1.7e-96 356.3 223 93.3
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 2.9e-96 355.5 223 93.3
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 8.5e-96 354.0 223 93.3
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.5e-95 353.2 223 92.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 4.2e-95 351.7 223 93.3
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 4.2e-95 351.7 223 92.8
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.2e-95 351.7 223 91.9
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.2e-95 351.7 224 92.0
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 4.2e-95 351.7 224 92.0
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.2e-94 350.1 224 91.5
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.2e-94 350.1 223 91.9
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 1.6e-94 349.7 223 92.4
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.6e-94 349.7 223 91.5
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 2.7e-94 349.0 236 88.6
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 2.7e-94 349.0 223 91.9
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 2.7e-94 349.0 225 91.6
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 4.7e-94 348.2 222 91.4
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 6.1e-94 347.8 226 89.8
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 1.4e-93 346.7 223 91.0
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.4e-93 346.7 223 90.1
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.8e-93 346.3 223 90.6
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 3.0e-93 345.5 223 91.0
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 3.0e-93 345.5 221 90.0
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 4.0e-93 345.1 223 91.5
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 5.2e-93 344.7 223 91.0
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 1.1e-92 343.6 222 91.4
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.1e-92 343.6 225 90.7
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 1.5e-92 343.2 223 89.7
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 2.6e-92 342.4 227 88.1
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 5.7e-92 341.3 223 89.2
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 7.5e-92 340.9 225 90.2
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 9.7e-92 340.5 225 90.2
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.3e-91 340.1 229 88.2
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.2e-91 339.3 230 88.7
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 2.2e-91 339.3 223 88.3
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.8e-91 339.0 223 90.6
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 3.7e-91 338.6 229 89.1
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 4.8e-91 338.2 223 88.3
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 6.3e-91 337.8 223 89.2
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 8.2e-91 337.4 225 88.9
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 1.1e-90 337.0 230 88.7
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 1.4e-90 336.7 223 90.1
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 1.4e-90 336.7 229 88.2
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.8e-90 336.3 223 88.8
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.1e-90 335.5 229 87.3
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.1e-90 335.1 230 88.3
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 5.3e-90 334.7 230 87.0
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 5.3e-90 334.7 230 87.0
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 7.0e-90 334.3 229 87.8
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 7.0e-90 334.3 229 88.6
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 7.0e-90 334.3 229 88.2
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 7.0e-90 334.3 229 88.2
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 7.0e-90 334.3 230 88.3
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 7.0e-90 334.3 230 88.3
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 7.0e-90 334.3 230 88.3
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 9.1e-90 334.0 228 86.4
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 1.6e-89 333.2 228 88.6
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.6e-89 333.2 223 87.9
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.7e-89 332.4 227 87.2
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.7e-89 332.4 225 88.0
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 2.7e-89 332.4 225 87.6
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 3.5e-89 332.0 223 87.4
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 3.5e-89 332.0 230 86.5
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 4.5e-89 331.6 229 87.3
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 5.9e-89 331.3 229 86.5
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 5.9e-89 331.3 220 88.6
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 7.7e-89 330.9 233 86.3
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.0e-88 330.5 223 86.5
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.0e-88 330.5 223 86.5
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-88 330.1 223 86.1
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.3e-88 330.1 223 86.1
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.7e-88 329.7 228 85.1
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.7e-88 329.7 223 87.0
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.7e-88 329.7 229 87.3
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 1.7e-88 329.7 222 87.4
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.9e-88 328.9 223 86.1
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 2.9e-88 328.9 223 89.7
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 86.1
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 86.5
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 86.1
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 5.0e-88 328.2 223 86.5
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 5.0e-88 328.2 224 87.9
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 6.5e-88 327.8 224 87.9
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 8.5e-88 327.4 223 86.5
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 8.5e-88 327.4 223 86.5
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 8.5e-88 327.4 232 86.6
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 8.5e-88 327.4 227 87.2
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 86.1
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 85.7
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 86.1
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 85.7
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 86.1
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.1e-87 327.0 229 86.0
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 1.5e-87 326.6 223 85.7
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 85.7
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 85.7
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 85.7
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.5e-87 325.9 225 87.1
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.2e-86 323.6 224 85.3
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 1.6e-86 323.2 226 85.8
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 1.0e-85 320.5 228 83.3
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 3.0e-85 318.9 223 85.2
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 4.0e-85 318.5 207 90.3
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 8.8e-85 317.4 227 85.5
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 7.5e-84 314.3 202 89.6
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 1.7e-83 313.2 188 96.3
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.8e-83 311.6 209 89.5
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 4.8e-83 311.6 269 74.3
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 8.3e-83 310.8 203 88.7
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.8e-82 309.7 226 84.1
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 7.0e-82 307.8 188 95.2
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 2.7e-81 305.8 229 81.7
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 2.7e-81 305.8 226 83.6
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.0e-80 303.9 198 89.9
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 2.2e-80 302.8 198 88.9
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.9e-80 302.4 184 96.2
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.1e-79 300.4 281 62.3
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 4.2e-79 298.5 186 93.5
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 5.7e-76 288.1 201 86.1
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 2.8e-75 285.8 191 89.5
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 1.8e-74 283.1 168 98.2
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 5.4e-74 281.6 180 90.0
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 8.6e-72 274.2 193 87.0
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.5e-71 273.5 187 86.6
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 2.5e-71 272.7 223 74.0
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 9.5e-71 270.8 186 86.0
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.8e-69 266.5 197 83.8
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 8.9e-69 264.2 220 68.6
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 1.7e-67 260.0 169 89.9
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 2.4e-66 256.1 226 70.4
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 5.4e-66 255.0 164 90.9
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.7e-64 250.0 180 82.8
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.8e-62 242.7 148 98.0
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 1.8e-61 240.0 148 93.2
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 6.8e-61 238.0 207 72.5
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 7.0e-58 228.0 178 79.2
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.2e-57 227.3 215 62.8
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.5e-57 225.7 238 59.7
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 3.5e-57 225.7 224 63.8
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 4.6e-57 225.3 137 97.8
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 3.9e-56 222.2 113 93.8
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.9e-55 219.9 156 74.4
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 2.1e-54 216.5 191 70.2
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 4.4e-52 208.8 151 84.8
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.7e-51 206.8 137 75.9
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.1e-50 204.1 132 95.5
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.6e-49 200.3 162 75.9
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 3.3e-47 192.6 161 65.8
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 3.8e-35 152.5 118 70.3
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 7.1e-34 148.3 127 63.0
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 1.4e-29 134.0 225 43.1
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.5e-28 130.6 203 43.3
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 8.4e-19 98.2 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.4e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 3.5e-17 92.8 78 65.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-07 60.8 60 53.3


User provided reference genes

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