Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.5e-115 418.7 202 100.0
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 7.5e-83 310.8 197 77.7
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.8e-77 292.4 199 76.4
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 7.0e-73 277.7 209 70.8
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 3.9e-71 271.9 207 68.6
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 2.5e-70 269.2 205 68.3
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.0e-68 263.8 200 66.0
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 5.2e-68 261.5 197 70.1
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 9.2e-65 250.8 220 62.7
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 7.8e-64 247.7 183 69.4
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.0e-63 247.3 199 65.3
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.5e-62 243.4 210 61.0
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.6e-61 240.0 212 62.7
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.6e-61 240.0 178 69.7
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 6.8e-60 234.6 214 58.9
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 6.8e-60 234.6 209 58.9
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 2.0e-59 233.0 217 62.7
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 2.0e-59 233.0 200 60.5
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.8e-59 230.7 207 62.3
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 9.8e-59 230.7 207 62.3
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 1.7e-58 229.9 195 59.5
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 2.2e-58 229.6 209 61.2
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.9e-58 229.2 205 60.0
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 3.7e-58 228.8 211 57.8
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 4.9e-58 228.4 211 58.8
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.4e-57 226.9 212 61.8
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-57 226.9 207 63.8
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.4e-57 226.9 200 61.5
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 7.1e-57 224.6 195 59.5
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 9.2e-57 224.2 231 55.4
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.7e-56 222.6 221 56.6
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 4.6e-56 221.9 200 60.5
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 4.6e-56 221.9 200 60.5
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 1.3e-55 220.3 201 57.7
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 2.3e-55 219.5 203 55.2
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.0e-55 219.2 200 60.0
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.5e-54 216.9 201 56.7
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.5e-54 216.9 200 59.5
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 2.5e-54 216.1 159 68.6
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 9.5e-54 214.2 208 54.3
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.2e-53 213.8 207 58.5
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.6e-53 213.4 178 61.2
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.3e-52 209.5 208 57.2
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.3e-52 209.5 210 57.1
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.2e-52 208.4 216 53.2
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.2e-52 208.4 210 57.1
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 5.2e-52 208.4 202 56.9
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.9e-52 207.6 210 56.7
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.2e-51 207.2 216 54.2
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.6e-51 206.1 199 53.3
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 3.4e-51 205.7 225 53.8
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.9e-51 204.1 216 53.2
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 2.9e-50 202.6 198 54.0
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 3.7e-50 202.2 198 54.0
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.1e-49 200.7 231 54.1
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 4.1e-49 198.7 194 54.6
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.4e-49 198.4 185 55.1
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 1.2e-48 197.2 211 55.0
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 1.2e-48 197.2 200 57.5
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.6e-48 196.8 208 57.7
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.1e-48 196.4 200 54.5
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.3e-47 193.0 194 54.6
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.9e-47 192.2 187 54.5
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 3.9e-47 192.2 228 48.2
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.6e-45 186.8 208 52.4
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.8e-45 186.0 207 55.6
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.6e-45 185.7 208 50.0
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 1.1e-44 184.1 225 48.0
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 2.4e-44 183.0 214 49.5
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 6.8e-44 181.4 222 50.0
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 8.9e-44 181.0 197 50.3
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.2e-43 180.6 208 50.0
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.4e-43 179.1 211 49.3
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 7.6e-43 177.9 248 47.6
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 9.9e-43 177.6 203 50.7
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 8.4e-42 174.5 203 49.8
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 8.4e-42 174.5 212 50.5
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.9e-41 173.3 199 50.8
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 4.2e-41 172.2 203 50.7
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 4.2e-41 172.2 210 48.6
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 5.4e-41 171.8 187 50.8
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 7.1e-41 171.4 203 50.2
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 9.3e-41 171.0 181 51.4
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 9.3e-41 171.0 206 50.0
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 9.3e-41 171.0 205 48.8
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 1.2e-40 170.6 209 49.8
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 2.1e-40 169.9 208 48.6
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.5e-40 169.1 209 51.7
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 4.6e-40 168.7 187 52.4
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.0e-39 167.5 234 50.0
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.7e-39 166.8 186 57.0
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.3e-39 166.4 207 50.7
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 3.0e-39 166.0 214 47.2
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 5.1e-39 165.2 205 50.7
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 5.1e-39 165.2 205 50.7
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 5.1e-39 165.2 205 50.7
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 5.1e-39 165.2 235 44.3
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.5e-38 163.7 212 48.1
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.5e-38 163.7 189 50.3
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 2.5e-38 162.9 207 48.3
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 2.5e-38 162.9 193 51.8
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.5e-38 162.9 204 50.0
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 3.3e-38 162.5 217 49.3
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 3.3e-38 162.5 217 49.3
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 9.6e-38 161.0 205 49.3
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 9.6e-38 161.0 206 48.1
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 9.6e-38 161.0 205 49.3
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 9.6e-38 161.0 206 48.1
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.1e-37 159.8 189 49.7
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 2.1e-37 159.8 201 47.3
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 2.8e-37 159.5 206 47.1
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 2.8e-37 159.5 206 47.1
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 2.8e-37 159.5 206 47.1
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 4.8e-37 158.7 203 44.8
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 1.8e-36 156.8 206 47.1
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.4e-36 156.4 206 46.6
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-35 154.1 195 47.7
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-35 154.1 195 47.7
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-35 154.1 195 47.7
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 3.4e-35 152.5 195 47.2
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.7e-34 150.2 174 51.1
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 2.2e-34 149.8 220 41.4
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 6.4e-34 148.3 184 47.3
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-33 147.5 185 45.9
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.9e-33 146.7 202 46.5
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.9e-33 146.7 174 49.4
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 2.4e-33 146.4 219 40.6
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-33 146.4 204 45.6
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 4.2e-33 145.6 183 46.4
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 9.3e-33 144.4 201 43.3
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 2.7e-32 142.9 172 47.7
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 7.8e-32 141.4 173 46.8
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.7e-31 140.2 252 42.5
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 2.3e-31 139.8 259 41.7
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.4e-28 130.6 191 44.5
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.1e-28 129.4 194 41.2
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 3.1e-28 129.4 142 50.7
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.4e-27 125.9 186 44.1
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.8e-27 125.2 208 38.5
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 7.6e-27 124.8 180 46.7
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 8.4e-26 121.3 205 40.0
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.1e-25 120.9 129 52.7
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 9.3e-25 117.9 200 39.5
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.5e-24 115.9 174 43.1
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 7.9e-24 114.8 96 60.4
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 2.3e-23 113.2 223 40.8
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 8.7e-23 111.3 197 40.1
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 1.1e-22 110.9 99 57.6
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.9e-22 110.2 214 37.4
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.3e-21 107.5 200 35.5
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.1e-20 104.4 200 38.5
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.3e-20 102.1 121 52.1
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 5.3e-20 102.1 98 53.1
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 9.0e-20 101.3 202 36.1
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.3e-18 97.4 159 40.3
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 8.4e-18 94.7 128 51.6
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.2e-17 92.8 207 36.2
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 4.2e-17 92.4 180 37.8
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 7.1e-17 91.7 253 32.0
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.6e-16 90.5 170 35.9
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 3.5e-16 89.4 182 35.7
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 3.5e-16 89.4 182 35.7
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 4.6e-16 89.0 181 36.5
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 4.6e-16 89.0 181 36.5
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 4.6e-16 89.0 82 58.5
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 6.0e-16 88.6 181 35.9
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 6.0e-16 88.6 165 38.8
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.8e-13 79.7 175 36.0
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 4.8e-13 79.0 99 41.4
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 2.6e-11 73.2 159 32.1
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.0e-10 71.2 93 41.9
Nn5g27936 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.3e-07 60.8 112 36.6
Zm00001eb076410 Zea mays HOM05D004006 ORTHO05D004585 2.5e-06 56.6 104 36.5


User provided reference genes

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