Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 9.2e-212 740.0 373 100.0
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 1.8e-127 459.9 323 73.4
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 4.0e-122 442.2 316 73.1
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 1.8e-119 433.3 313 71.6
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 1.6e-118 430.3 313 72.8
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 6.6e-117 424.9 301 73.8
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 1.9e-116 423.3 278 77.7
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 1.6e-115 420.2 313 70.0
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 2.8e-115 419.5 294 73.1
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 2.8e-115 419.5 329 65.7
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 1.4e-114 417.2 266 77.8
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 3.0e-114 416.0 312 71.5
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 4.0e-114 415.6 306 71.2
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 8.9e-114 414.5 312 68.9
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 1.5e-113 413.7 315 67.9
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 3.4e-113 412.5 279 74.2
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 1.3e-112 410.6 294 72.8
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 1.3e-112 410.6 297 72.4
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 2.9e-112 409.5 280 72.5
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 6.4e-112 408.3 269 76.6
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 5.4e-111 405.2 302 70.2
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 5.4e-111 405.2 271 76.0
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 7.0e-111 404.8 277 75.1
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 2.7e-110 402.9 313 67.7
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 2.7e-110 402.9 243 81.5
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 3.5e-110 402.5 253 79.1
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 3.5e-110 402.5 288 73.3
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 4.6e-110 402.1 320 69.1
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 4.6e-110 402.1 285 73.0
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 6.0e-110 401.7 273 74.4
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 7.8e-110 401.4 252 80.2
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 1.7e-109 400.2 268 77.2
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 3.9e-109 399.1 313 68.1
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 5.0e-109 398.7 299 69.9
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 5.0e-109 398.7 257 79.4
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 8.6e-109 397.9 287 72.1
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 3.3e-108 396.0 283 73.1
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 4.3e-108 395.6 292 71.2
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 5.6e-108 395.2 231 83.1
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 1.2e-107 394.0 316 67.1
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.6e-107 393.7 314 67.5
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 2.8e-107 392.9 311 68.5
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 2.8e-107 392.9 311 68.5
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 8.0e-107 391.3 266 74.1
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 1.1e-106 391.0 291 69.8
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 1.4e-106 390.6 233 83.7
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.4e-106 390.6 293 71.0
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 1.4e-106 390.6 227 83.7
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 2.3e-106 389.8 241 79.7
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 5.2e-106 388.7 266 76.3
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 6.8e-106 388.3 226 83.6
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 8.9e-106 387.9 260 76.5
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 1.2e-105 387.5 290 69.7
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 5.8e-105 385.2 243 79.8
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 9.8e-105 384.4 310 65.2
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.7e-104 383.6 312 65.4
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 8.3e-104 381.3 240 80.0
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 4.1e-103 379.0 249 77.1
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 5.4e-103 378.6 304 66.1
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 5.4e-103 378.6 260 73.5
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 1.2e-102 377.5 277 70.0
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 1.2e-102 377.5 286 68.9
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 2.0e-102 376.7 269 71.4
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 4.6e-102 375.6 234 78.6
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 6.0e-102 375.2 257 73.2
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 6.0e-102 375.2 227 81.9
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 7.8e-102 374.8 272 71.3
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 1.0e-101 374.4 307 65.8
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 1.3e-101 374.0 274 70.1
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 2.3e-101 373.2 275 69.8
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 2.3e-101 373.2 376 56.6
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 5.0e-101 372.1 260 71.5
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 6.6e-101 371.7 276 68.8
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 3.3e-100 369.4 211 85.3
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 9.5e-100 367.9 298 66.1
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 9.5e-100 367.9 275 70.2
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 1.6e-99 367.1 289 66.4
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 2.8e-99 366.3 265 71.3
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 1.1e-98 364.4 254 72.4
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 1.4e-98 364.0 212 84.4
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 5.2e-98 362.1 292 66.1
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 1.5e-97 360.5 215 82.3
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 2.6e-97 359.8 269 71.4
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 3.4e-97 359.4 306 63.1
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 7.5e-97 358.2 222 78.4
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 9.9e-97 357.8 226 76.5
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 9.9e-97 357.8 257 70.0
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 1.3e-96 357.5 238 76.5
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 5.4e-95 352.1 306 62.4
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 2.7e-94 349.7 394 51.8
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 3.3e-92 342.8 309 61.2
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 4.7e-91 339.0 225 75.1
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.8e-90 337.0 314 60.2
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 9.9e-89 331.3 275 63.3
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 1.7e-88 330.5 225 72.4
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 4.9e-88 328.9 272 63.6
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 4.9e-88 328.9 308 62.0
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 6.4e-88 328.6 193 82.9
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 6.4e-88 328.6 228 72.4
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 4.1e-87 325.9 230 72.2
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 1.6e-86 323.9 322 59.0
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 2.3e-85 320.1 221 72.9
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 7.3e-84 315.1 299 61.5
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 8.1e-83 311.6 219 73.1
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 1.4e-79 300.8 272 61.4
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 2.2e-72 276.9 172 77.3
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 3.8e-72 276.2 226 62.8
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 2.4e-71 273.5 207 70.5
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 6.7e-69 265.4 223 59.6
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 1.3e-67 261.2 173 74.6
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 5.3e-66 255.8 178 72.5
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 1.3e-56 224.6 204 53.9
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 2.3e-53 213.8 175 64.6
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 1.5e-44 184.5 162 60.5
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 7.4e-44 182.2 168 59.5
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 2.5e-39 167.2 134 67.2
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 1.2e-38 164.9 150 60.0
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 1.2e-38 164.9 104 76.0
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 5.0e-32 142.9 236 41.5
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 3.9e-29 133.3 257 39.7
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 2.6e-25 120.6 144 50.7
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 4.5e-25 119.8 150 46.7
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 5.0e-24 116.3 184 42.9
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 7.5e-20 102.4 65 72.3
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 9.1e-18 95.5 232 28.9
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 1.2e-17 95.1 99 51.5
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 4.5e-17 93.2 218 29.8
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 1.3e-16 91.7 62 67.7
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 1.5e-15 88.2 62 64.5
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 7.2e-15 85.9 48 81.2
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 1.2e-14 85.1 87 59.8
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 6.6e-08 62.8 76 53.9
Medtr4g129075 Medicago truncatula HOM05D005661 ORTHO05D266434 4.7e-06 56.6 32 78.1


User provided reference genes

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