Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 0.0e+00 1515.7 874 100.0
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 4.2e-207 725.7 902 55.7
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 5.6e-159 565.8 877 49.8
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 4.7e-142 509.6 901 46.4
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 5.3e-125 453.0 897 44.8
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 5.8e-124 449.5 990 38.7
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 4.6e-121 439.9 888 40.3
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 6.5e-115 419.5 939 37.7
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 5.5e-114 416.4 939 37.6
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 6.5e-107 392.9 969 36.3
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 2.5e-103 380.9 903 40.8
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 2.1e-97 361.3 917 37.9
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 6.1e-97 359.8 888 36.6
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 3.8e-91 340.5 941 40.1
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 7.2e-90 336.3 902 36.3
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 9.4e-90 335.9 916 36.7
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 2.2e-86 324.7 923 33.6
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.4e-85 322.0 916 33.3
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 5.5e-82 310.1 896 32.6
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 3.6e-81 307.4 897 34.3
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 4.4e-79 300.4 900 33.4
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 9.7e-79 299.3 892 31.6
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.4e-77 295.4 915 32.9
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.8e-77 295.0 877 32.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 9.1e-77 292.7 889 34.2
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 1.2e-76 292.4 861 33.9
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 8.5e-75 286.2 909 34.1
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 1.6e-73 282.0 907 34.2
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 4.7e-73 280.4 901 32.7
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 2.3e-72 278.1 898 34.3
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.2e-70 271.6 931 33.3
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 5.4e-69 266.9 890 32.7
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 3.5e-68 264.2 913 33.3
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 1.7e-67 261.9 929 33.5
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.2e-66 257.3 931 32.9
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 9.5e-66 256.1 921 31.4
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 1.6e-65 255.4 866 31.1
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 8.0e-65 253.1 886 31.6
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 5.2e-64 250.4 896 33.1
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 2.6e-63 248.1 921 35.5
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 2.8e-62 244.6 936 37.0
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 8.3e-62 243.0 929 30.0
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 3.3e-58 231.1 949 29.3
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.2e-57 229.2 643 35.9
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.8e-57 228.0 898 30.4
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 3.6e-57 227.6 898 30.4
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 3.6e-57 227.6 953 32.9
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 2.3e-56 224.9 956 33.7
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 4.4e-55 220.7 931 35.6
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 5.8e-55 220.3 937 36.0
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 7.5e-55 219.9 1034 32.7
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 7.5e-55 219.9 889 31.8
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 3.2e-53 214.5 866 28.2
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 4.6e-52 210.7 946 30.5
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 7.8e-52 209.9 923 28.1
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 1.3e-51 209.1 950 35.4
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 2.3e-51 208.4 884 31.6
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 6.6e-51 206.8 907 31.6
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.5e-50 205.7 871 33.5
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 7.3e-50 203.4 863 33.0
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 7.3e-50 203.4 901 34.4
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 9.5e-50 203.0 879 30.6
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 2.1e-49 201.8 924 29.8
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 2.8e-49 201.4 888 29.7
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 2.3e-48 198.4 923 28.9
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 4.0e-48 197.6 925 29.5
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.2e-47 196.1 913 30.1
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 4.4e-47 194.1 919 29.7
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.4e-47 194.1 948 30.4
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.8e-47 193.7 940 29.3
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.3e-46 192.6 949 28.9
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.4e-45 187.2 929 28.6
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 7.8e-44 183.3 883 28.2
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.5e-42 178.3 905 30.1
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.5e-42 178.3 166 62.7
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 9.5e-42 176.4 892 29.4
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 2.1e-41 175.3 915 28.7
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 2.8e-41 174.9 952 28.8
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 1.4e-40 172.6 930 29.8
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 8.9e-40 169.9 934 27.6
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.9e-38 164.9 943 30.2
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 5.4e-37 160.6 218 47.2
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.6e-36 159.1 869 27.4
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 2.1e-36 158.7 919 30.9
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.0e-35 156.4 817 28.4
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.3e-35 156.0 870 27.2
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 9.5e-34 149.8 930 27.3
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 2.1e-33 148.7 872 27.3
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 8.1e-33 146.7 953 30.4
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 1.7e-30 139.0 1000 26.5
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.4e-29 136.0 333 38.7
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.2e-28 132.9 843 26.3
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 2.1e-28 132.1 862 27.8
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.0e-27 129.8 888 27.0
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 1.7e-27 129.0 883 29.2
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 6.6e-27 127.1 989 29.0
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.1e-26 126.3 978 25.8
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 3.3e-26 124.8 918 27.3
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 5.6e-26 124.0 198 42.9
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 7.3e-26 123.6 183 47.5
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 2.4e-24 118.6 877 27.3
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 3.1e-24 118.2 911 26.0
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 4.0e-24 117.9 883 26.8
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 4.0e-24 117.9 147 51.0
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 5.3e-24 117.5 902 28.3
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 9.0e-24 116.7 858 26.7
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 9.0e-24 116.7 916 27.1
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 3.4e-23 114.8 948 25.3
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 4.4e-23 114.4 971 26.3
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 7.6e-23 113.6 926 26.5
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 9.9e-23 113.2 912 29.3
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 1.7e-22 112.5 806 25.6
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.4e-21 109.4 896 27.1
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.9e-21 109.0 948 28.2
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 3.2e-21 108.2 866 25.5
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 9.3e-21 106.7 868 26.2
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.1e-20 105.5 987 25.2
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 2.1e-20 105.5 895 26.4
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 2.1e-20 105.5 342 33.0
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 6.0e-20 104.0 331 33.2
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 1.3e-19 102.8 857 25.9
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 3.6e-17 94.7 857 25.7
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 6.2e-17 94.0 311 32.5
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 1.8e-16 92.4 802 27.8
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.5e-15 87.8 193 39.9
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 4.5e-15 87.8 840 26.2
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 9.9e-15 86.7 315 30.2
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 1.7e-14 85.9 918 23.6
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 1.7e-14 85.9 200 40.0
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.4e-13 82.8 79 60.8
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.9e-13 82.4 184 37.0
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 3.2e-13 81.6 888 24.1
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 7.1e-13 80.5 159 40.9
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 7.1e-13 80.5 916 23.1
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 7.1e-13 80.5 302 31.1
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 2.1e-12 79.0 874 24.5
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 2.3e-11 75.5 139 40.3
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 3.0e-11 75.1 224 33.0
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 6.9e-08 63.9 124 41.1
VMungo1215G3006 Vigna mungo HOM05D004628 ORTHO05D005166 7.6e-07 60.5 82 48.8
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 1.0e-06 60.1 79 51.9


User provided reference genes

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