Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.1e-143 513.5 304 100.0
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.9e-74 283.5 298 68.5
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 9.0e-64 248.1 295 61.7
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 4.8e-57 225.7 310 58.7
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.4e-53 214.2 317 56.2
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 7.9e-52 208.4 317 55.5
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 1.8e-43 180.6 320 45.3
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.1e-42 177.9 297 51.5
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 3.3e-42 176.4 300 51.0
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 1.0e-38 164.9 307 50.5
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 5.5e-37 159.1 302 49.7
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.5e-34 150.2 298 43.0
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 7.4e-34 148.7 297 42.1
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 1.3e-33 147.9 309 41.1
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.6e-33 147.5 307 47.2
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 1.7e-30 137.5 269 48.0
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 5.0e-30 136.0 276 43.1
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 1.6e-28 131.0 299 41.1
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 5.1e-27 125.9 299 40.8
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 8.8e-27 125.2 259 49.8
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 1.1e-26 124.8 314 43.9
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 2.0e-26 124.0 350 42.0
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.0e-26 124.0 295 38.3
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 5.7e-26 122.5 314 43.6
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 7.4e-26 122.1 297 34.3
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.7e-25 120.9 296 43.9
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.7e-25 120.9 274 44.9
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 3.7e-25 119.8 272 43.8
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 8.2e-25 118.6 296 43.9
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 8.2e-25 118.6 366 35.2
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 5.3e-24 115.9 312 41.0
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 1.5e-23 114.4 301 36.9
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 1.5e-23 114.4 300 40.0
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 2.0e-23 114.0 307 42.7
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 2.0e-23 114.0 267 47.9
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 2.6e-23 113.6 278 46.0
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.4e-23 113.2 307 42.3
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 7.7e-23 112.1 385 35.3
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.0e-22 111.7 326 39.9
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 1.7e-22 110.9 313 44.4
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 3.8e-22 109.8 335 38.2
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 1.1e-21 108.2 383 35.2
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 1.4e-21 107.8 268 45.1
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 7.9e-20 102.1 295 41.7
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 3.9e-19 99.8 328 36.6
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 2.6e-18 97.1 331 35.0
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 3.3e-18 96.7 360 36.9
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 3.3e-18 96.7 350 33.4
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 9.7e-18 95.1 324 35.2
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.7e-17 94.4 320 33.8
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.7e-17 93.2 336 27.1
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 6.3e-17 92.4 329 36.5
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 1.1e-16 91.7 295 40.3
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 1.8e-16 90.9 296 32.4
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 2.4e-16 90.5 296 39.9
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 7.0e-16 89.0 306 40.8
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 1.2e-15 88.2 354 39.0
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.6e-15 87.8 271 43.2
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 7.7e-15 85.5 271 42.8
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 7.7e-15 85.5 308 35.7
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 3.8e-14 83.2 271 42.1
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 3.8e-14 83.2 348 32.5
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 5.0e-14 82.8 329 31.6
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 6.5e-14 82.4 337 32.3
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 1.1e-13 81.6 301 28.6
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 1.2e-12 78.2 326 32.8
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 6.1e-12 75.9 395 32.7
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 8.0e-12 75.5 233 26.2
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 1.0e-11 75.1 331 35.6
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 1.4e-11 74.7 354 34.2
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 3.0e-11 73.6 299 39.1
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 1.1e-10 71.6 94 42.6
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.5e-10 71.2 274 40.1
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 2.0e-10 70.9 49 67.3
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 2.0e-10 70.9 96 56.2
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 5.7e-10 69.3 51 62.7
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 2.2e-09 67.4 223 32.3
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 2.2e-09 67.4 182 39.0
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 2.8e-09 67.0 295 32.9
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 3.7e-09 66.6 285 36.8
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 2.7e-07 60.5 48 60.4
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 3.5e-07 60.1 172 35.5
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 1.0e-06 58.5 167 32.9
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 1.3e-06 58.2 197 36.5
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 6.5e-06 55.8 38 63.2
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 6.5e-06 55.8 152 35.5


User provided reference genes

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