Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.8e-99 365.9 188 100.0
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.8e-76 288.1 192 81.2
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.1e-75 285.4 192 81.8
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.8e-55 219.2 193 63.2
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 1.2e-50 203.8 183 61.7
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 3.0e-49 199.1 167 63.5
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 4.3e-48 195.3 187 60.4
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 6.2e-47 191.4 170 63.5
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.4e-46 190.3 184 59.8
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 4.0e-46 188.7 188 58.0
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 2.0e-45 186.4 177 58.8
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 2.6e-45 186.0 193 56.5
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.3e-44 183.7 180 56.1
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 2.4e-43 179.5 141 67.4
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 7.0e-43 177.9 147 65.3
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.2e-42 177.2 197 54.3
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 3.5e-42 175.6 197 54.3
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 4.6e-42 175.3 162 60.5
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 7.8e-42 174.5 183 55.7
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.0e-41 174.1 117 73.5
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.3e-41 173.7 169 58.6
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.3e-41 173.7 166 59.6
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.3e-41 173.7 144 63.9
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.3e-41 173.7 155 61.9
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 3.0e-41 172.6 159 62.3
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 3.0e-41 172.6 170 57.1
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 3.0e-41 172.6 143 65.7
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 3.9e-41 172.2 118 73.7
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 5.0e-41 171.8 175 57.1
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 5.0e-41 171.8 203 54.2
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 5.0e-41 171.8 174 54.6
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 5.0e-41 171.8 141 66.0
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.1e-40 170.6 122 71.3
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.1e-40 170.6 185 53.0
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.9e-40 169.9 118 72.9
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.9e-40 169.9 174 58.0
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.9e-40 169.9 162 59.9
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.5e-40 169.5 144 64.6
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 3.3e-40 169.1 173 57.2
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 3.3e-40 169.1 141 63.1
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.3e-40 169.1 177 54.8
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 4.3e-40 168.7 177 54.8
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.3e-40 168.7 143 63.6
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 4.3e-40 168.7 118 71.2
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 5.6e-40 168.3 122 72.1
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 7.3e-40 167.9 178 53.9
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 9.5e-40 167.5 177 54.8
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 9.5e-40 167.5 163 58.9
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.2e-39 167.2 179 55.3
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.2e-39 167.2 138 65.2
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 1.6e-39 166.8 167 60.5
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 2.1e-39 166.4 143 64.3
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.8e-39 166.0 140 70.0
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.6e-39 165.6 167 57.5
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 4.7e-39 165.2 171 55.6
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 6.2e-39 164.9 155 65.8
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 6.2e-39 164.9 139 64.0
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 8.1e-39 164.5 152 58.6
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-38 164.1 136 70.6
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.1e-38 164.1 175 51.4
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-38 163.7 140 69.3
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 1.4e-38 163.7 212 46.7
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.8e-38 163.3 118 70.3
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.8e-38 163.3 157 60.5
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.3e-38 162.9 118 70.3
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 3.1e-38 162.5 143 62.9
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 3.1e-38 162.5 143 62.9
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 4.0e-38 162.2 165 58.2
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 4.0e-38 162.2 122 66.4
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 5.2e-38 161.8 169 53.8
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 6.8e-38 161.4 159 55.3
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 6.8e-38 161.4 150 58.0
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 8.9e-38 161.0 167 55.7
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.5e-37 160.2 118 68.6
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.5e-37 160.2 161 57.1
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.5e-37 160.2 167 56.9
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 2.0e-37 159.8 173 54.3
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 4.4e-37 158.7 167 57.5
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 5.8e-37 158.3 117 68.4
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 7.5e-37 157.9 134 64.9
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 9.9e-37 157.5 136 65.4
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.2e-36 156.4 149 57.0
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.2e-36 156.4 146 62.3
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 2.9e-36 156.0 155 60.0
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 3.7e-36 155.6 156 56.4
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 3.7e-36 155.6 147 59.9
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.7e-36 155.6 124 62.9
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 4.9e-36 155.2 149 56.4
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 4.9e-36 155.2 185 51.9
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 8.3e-36 154.5 182 51.6
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 8.3e-36 154.5 160 52.5
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 2.4e-35 152.9 178 52.8
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.4e-35 152.9 151 57.0
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.4e-35 152.9 151 57.0
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 3.2e-35 152.5 184 52.2
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 3.2e-35 152.5 179 52.5
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 4.1e-35 152.1 148 58.8
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 5.4e-35 151.8 119 68.1
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 5.4e-35 151.8 119 67.2
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 5.4e-35 151.8 162 53.1
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 7.1e-35 151.4 117 65.8
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 9.2e-35 151.0 157 57.3
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 9.2e-35 151.0 119 66.4
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 2.1e-34 149.8 119 63.0
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 3.5e-34 149.1 156 57.7
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 6.0e-34 148.3 187 51.3
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 6.0e-34 148.3 187 51.3
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 6.0e-34 148.3 119 67.2
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 7.8e-34 147.9 120 66.7
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 7.8e-34 147.9 186 52.7
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 2.3e-33 146.4 135 60.7
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 3.0e-33 146.0 118 67.8
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 6.6e-33 144.8 151 57.6
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 2.4e-30 136.3 118 60.2
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.4e-27 127.1 158 48.1
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 2.1e-26 123.2 144 50.7
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 2.1e-26 123.2 144 50.7
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 3.5e-26 122.5 150 48.7
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.0e-25 120.9 127 58.3
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.7e-25 120.2 120 55.0
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 6.6e-25 118.2 186 45.7
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.1e-23 113.2 126 50.8
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.8e-23 112.8 122 58.2
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.4e-19 100.5 89 58.4
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.4e-19 99.8 145 51.7
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.5e-16 90.5 99 51.5
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 1.3e-15 87.4 122 41.8
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.1e-14 84.3 126 43.7
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.4e-14 84.0 135 44.4
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.1e-14 82.8 109 45.9
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 6.9e-14 81.6 145 37.2
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 6.4e-12 75.1 94 53.2
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.7e-10 69.7 66 63.6
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.8e-09 67.0 139 36.7
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.3e-08 62.8 66 62.1
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 5.6e-08 62.0 117 37.6


User provided reference genes

Program Settings