Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.3e-98 364.0 262 100.0
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 3.1e-63 247.3 174 71.3
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 4.6e-46 190.3 262 67.6
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 3.6e-43 180.6 178 55.6
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 4.7e-43 180.3 263 67.3
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 1.2e-38 165.6 264 61.0
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 9.5e-36 156.0 264 65.2
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.1e-34 152.5 176 51.7
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 6.8e-34 149.8 175 52.6
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 1.2e-33 149.1 174 51.7
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 1.5e-33 148.7 262 61.5
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 3.4e-33 147.5 266 59.4
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 4.4e-33 147.1 175 52.0
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 1.7e-32 145.2 179 52.0
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 2.9e-32 144.4 175 51.4
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 8.3e-32 142.9 174 50.6
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 8.3e-32 142.9 174 50.6
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 3.2e-31 141.0 174 50.0
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 7.1e-31 139.8 97 71.1
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 2.1e-30 138.3 262 61.5
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 1.0e-29 136.0 178 50.6
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 2.3e-29 134.8 174 47.7
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 2.5e-28 131.3 174 46.6
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 2.5e-28 131.3 174 47.7
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 2.1e-27 128.3 263 60.1
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 4.7e-27 127.1 174 46.0
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 1.8e-26 125.2 175 45.1
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 4.0e-26 124.0 265 59.2
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 8.9e-26 122.9 209 70.3
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 1.2e-25 122.5 227 53.3
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 1.5e-25 122.1 263 55.9
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 2.6e-25 121.3 227 56.4
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 7.6e-25 119.8 194 74.2
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 2.2e-24 118.2 120 55.8
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 2.4e-23 114.8 177 47.5
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 3.2e-23 114.4 119 55.5
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 5.4e-23 113.6 178 41.0
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 7.1e-23 113.2 119 54.6
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 7.1e-23 113.2 107 57.0
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 1.6e-22 112.1 263 56.7
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 2.1e-22 111.7 117 54.7
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 2.7e-22 111.3 191 70.7
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 4.6e-22 110.5 169 41.4
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 1.3e-21 109.0 114 56.1
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 2.3e-21 108.2 107 58.9
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 3.0e-21 107.8 174 43.1
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 3.9e-21 107.5 106 58.5
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 5.1e-21 107.1 246 60.2
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 5.1e-21 107.1 262 53.4
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 8.7e-21 106.3 116 52.6
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 1.1e-20 105.9 91 63.7
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 1.9e-20 105.1 98 59.2
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 3.3e-20 104.4 111 54.1
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 3.3e-20 104.4 108 57.4
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 5.6e-20 103.6 180 72.2
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 7.3e-20 103.2 93 57.0
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 1.1e-18 99.4 178 43.8
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 1.4e-18 99.0 263 53.2
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.4e-18 99.0 168 42.9
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 1.8e-18 98.6 281 55.5
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 3.1e-18 97.8 286 53.8
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 3.1e-18 97.8 286 53.8
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 4.0e-18 97.4 192 70.3
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 5.3e-18 97.1 192 70.8
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 6.9e-18 96.7 64 71.9
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 6.9e-18 96.7 192 71.4
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 6.9e-18 96.7 142 82.4
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 1.5e-17 95.5 125 47.2
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 2.0e-17 95.1 104 55.8
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 2.0e-17 95.1 119 48.7
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 3.4e-17 94.4 181 73.5
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 4.4e-17 94.0 170 72.9
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 5.8e-17 93.6 180 72.2
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 5.8e-17 93.6 59 71.2
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 1.3e-16 92.4 180 71.7
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 1.3e-16 92.4 180 71.7
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 1.3e-16 92.4 149 83.2
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 2.2e-16 91.7 158 40.5
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 2.2e-16 91.7 112 48.2
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 2.2e-16 91.7 172 37.2
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 8.4e-16 89.7 172 41.3
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.9e-15 88.6 108 50.0
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 3.2e-15 87.8 105 43.8
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 4.2e-15 87.4 228 60.1
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 5.4e-15 87.0 123 45.5
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 7.1e-15 86.7 176 50.6
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 9.3e-15 86.3 98 46.9
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 1.2e-14 85.9 177 36.7
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 3.5e-14 84.3 108 49.1
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.5e-14 84.3 169 37.3
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 1.0e-13 82.8 108 48.1
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 1.3e-13 82.4 161 72.0
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.7e-13 82.0 175 38.9
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 2.3e-13 81.6 177 35.6
Cpa.g.sc177.11 Carica papaya HOM05D006739 ORTHO05D008402 2.3e-13 81.6 140 43.6
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 6.6e-13 80.1 96 89.6
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 7.3e-12 76.6 108 44.4
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 9.6e-12 76.3 104 49.0
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.8e-11 74.7 189 42.3
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.8e-11 74.7 189 42.3
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 2.8e-11 74.7 108 46.3
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 4.8e-11 73.9 50 66.0
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 6.2e-11 73.6 108 44.4
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 4.0e-10 70.9 122 39.3
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 4.0e-10 70.9 98 44.9
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.6e-09 68.2 90 45.6
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 1.9e-07 62.0 86 43.0
TPR.G15758 Trifolium pratense HOM05D000069 ORTHO05D001849 1.6e-06 58.9 88 42.0


User provided reference genes

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