Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 3.4e-39 164.9 103 100.0
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 6.0e-36 154.1 80 93.8
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 2.3e-35 152.1 81 92.6
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 3.0e-35 151.8 79 93.7
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 3.0e-35 151.8 80 92.5
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 1.5e-34 149.4 80 91.2
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 1.5e-34 149.4 80 92.5
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 1.5e-34 149.4 80 91.2
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 1.5e-34 149.4 80 92.5
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 1.9e-34 149.1 79 93.7
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 2.5e-34 148.7 79 93.7
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 2.5e-34 148.7 79 93.7
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 4.3e-34 147.9 80 91.2
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 4.3e-34 147.9 80 90.0
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 4.3e-34 147.9 79 91.1
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 5.6e-34 147.5 81 86.4
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 5.6e-34 147.5 80 88.8
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 5.6e-34 147.5 80 88.8
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 5.6e-34 147.5 80 91.2
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 5.6e-34 147.5 80 91.2
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 5.6e-34 147.5 80 91.2
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 7.3e-34 147.1 80 91.2
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 9.5e-34 146.7 80 88.8
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 9.5e-34 146.7 80 87.5
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 9.5e-34 146.7 80 88.8
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 1.2e-33 146.4 80 87.5
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 1.2e-33 146.4 80 90.0
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.2e-33 146.4 78 92.3
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 1.2e-33 146.4 80 87.5
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 1.2e-33 146.4 79 91.1
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 1.6e-33 146.0 80 87.5
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.6e-33 146.0 80 87.5
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.6e-33 146.0 80 87.5
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.6e-33 146.0 80 87.5
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 1.6e-33 146.0 81 86.4
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 1.6e-33 146.0 81 86.4
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 1.6e-33 146.0 82 85.4
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 2.1e-33 145.6 79 91.1
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 2.1e-33 145.6 80 90.0
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 2.1e-33 145.6 81 88.9
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 2.1e-33 145.6 80 90.0
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 2.1e-33 145.6 80 87.5
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 2.8e-33 145.2 79 89.9
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 2.8e-33 145.2 80 87.5
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 3.6e-33 144.8 81 87.7
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 3.6e-33 144.8 81 86.4
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 4.7e-33 144.4 80 90.0
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 4.7e-33 144.4 81 87.7
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 4.7e-33 144.4 81 85.2
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 4.7e-33 144.4 80 88.8
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 4.7e-33 144.4 81 86.4
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 4.7e-33 144.4 81 87.7
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 4.7e-33 144.4 81 87.7
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 6.2e-33 144.1 79 89.9
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 6.2e-33 144.1 80 86.2
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 8.1e-33 143.7 80 88.8
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 8.1e-33 143.7 80 86.2
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 8.1e-33 143.7 81 85.2
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 1.1e-32 143.3 81 86.4
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 1.1e-32 143.3 80 85.0
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 1.1e-32 143.3 81 86.4
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 1.4e-32 142.9 81 84.0
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 1.4e-32 142.9 79 88.6
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 1.4e-32 142.9 98 78.6
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 1.4e-32 142.9 80 87.5
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 1.4e-32 142.9 80 88.8
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 1.8e-32 142.5 81 86.4
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 1.8e-32 142.5 79 89.9
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 2.3e-32 142.1 80 86.2
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 2.3e-32 142.1 80 86.2
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 2.3e-32 142.1 80 86.2
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 2.3e-32 142.1 80 88.8
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 2.3e-32 142.1 80 86.2
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 3.1e-32 141.7 80 86.2
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 3.1e-32 141.7 80 87.5
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 3.1e-32 141.7 81 86.4
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 4.0e-32 141.4 80 85.0
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 5.2e-32 141.0 80 87.5
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 5.2e-32 141.0 80 86.2
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 5.2e-32 141.0 81 82.7
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 5.2e-32 141.0 81 82.7
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 5.2e-32 141.0 80 87.5
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 6.8e-32 140.6 81 84.0
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 6.8e-32 140.6 81 84.0
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 6.8e-32 140.6 81 82.7
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 8.9e-32 140.2 80 85.0
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 1.2e-31 139.8 80 86.2
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 1.2e-31 139.8 80 86.2
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 1.5e-31 139.4 81 82.7
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 1.5e-31 139.4 81 82.7
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 1.5e-31 139.4 81 82.7
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 1.5e-31 139.4 79 84.8
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 2.0e-31 139.0 80 83.8
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 2.0e-31 139.0 80 83.8
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 2.6e-31 138.7 79 87.3
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 2.6e-31 138.7 80 82.5
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 4.4e-31 137.9 80 86.2
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 1.3e-30 136.3 80 82.5
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 1.3e-30 136.3 78 87.2
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 1.7e-30 136.0 78 84.6
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 2.2e-30 135.6 109 67.0
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 3.7e-30 134.8 90 76.7
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 6.4e-30 134.0 79 81.0
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 8.3e-30 133.7 73 87.7
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 8.3e-30 133.7 80 83.8
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 3.2e-29 131.7 78 83.3
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 3.5e-28 128.3 95 68.4
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 8.6e-27 123.6 78 76.9
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 2.5e-26 122.1 81 74.1
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 3.3e-26 121.7 81 74.1
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 6.2e-25 117.5 132 52.3
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 6.2e-25 117.5 132 52.3
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 4.0e-24 114.8 68 85.3
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 8.9e-24 113.6 62 90.3
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 2.6e-23 112.1 78 69.2
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 1.7e-22 109.4 78 67.9
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 7.1e-21 104.0 54 92.6
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.4e-15 85.1 46 87.0
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.4e-15 85.1 46 87.0
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.4e-15 85.1 46 87.0
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 2.2e-14 82.4 82 53.7
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 1.2e-12 76.6 49 77.6
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 8.1e-09 63.9 33 93.9


User provided reference genes

Program Settings