Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0128 Trochodendron aralioides HOM05D004900 ORTHO05D006392 1.3e-102 376.3 183 100.0
TAR628G1054 Trochodendron aralioides HOM05D004900 ORTHO05D006392 1.6e-92 342.8 183 91.8
Nn1g04853 Nelumbo nucifera HOM05D004900 ORTHO05D006392 9.8e-90 333.6 181 89.5
Hma1.2p1_0370F.1_g137745 Hydrangea macrophylla HOM05D004900 ORTHO05D006392 3.8e-86 321.6 180 84.4
Sabra09G0077500 Salix brachista HOM05D004900 ORTHO05D006392 3.8e-86 321.6 180 83.9
CANSAT25G2295 Cannabis sativa HOM05D004900 ORTHO05D006392 2.5e-85 318.9 180 81.7
Haze_10084 Corylus avellana HOM05D004900 ORTHO05D006392 2.5e-85 318.9 180 84.4
PGR142G1087 Punica granatum HOM05D004900 ORTHO05D006392 2.5e-85 318.9 180 83.9
Aqoxy6G01317 Aquilegia oxysepala HOM05D004900 ORTHO05D006392 5.5e-85 317.8 181 84.5
RcHm_v2.0_Chr6g0257431 Rosa chinensis HOM05D004900 ORTHO05D006392 7.2e-85 317.4 180 83.9
CiPaw.06G172200 Carya illinoinensis HOM05D004900 ORTHO05D006392 1.2e-84 316.6 181 83.4
Prupe.8G126000 Prunus persica HOM05D004900 ORTHO05D006392 2.1e-84 315.8 180 83.3
ClCG05G009960 Citrullus lanatus HOM05D004900 ORTHO05D006392 3.6e-84 315.1 181 84.0
QL11p035712 Quercus lobata HOM05D004900 ORTHO05D006392 4.7e-84 314.7 180 83.3
Duzib248G0136 Durio zibethinus HOM05D004900 ORTHO05D006392 6.1e-84 314.3 180 83.9
CsaV3_3G018610 Cucumis sativus L. HOM05D004900 ORTHO05D006392 1.0e-83 313.5 181 83.4
Atru.chr5.2694 Acer truncatum HOM05D004900 ORTHO05D006392 1.4e-83 313.2 181 84.0
FvH4_2g05960 Fragaria vesca HOM05D004900 ORTHO05D006392 1.4e-83 313.2 180 82.2
Lalb_Chr05g0219191 Lupinus albus HOM05D004900 ORTHO05D006392 1.4e-83 313.2 180 83.3
Cpa.g.sc62.8 Carica papaya HOM05D004900 ORTHO05D006392 1.8e-83 312.8 180 82.2
Cfa004525 Carpinus fangiana HOM05D004900 ORTHO05D006392 2.3e-83 312.4 180 82.2
FAN24G3555 Fragaria x ananassa HOM05D004900 ORTHO05D006392 2.3e-83 312.4 180 82.2
VMungo0251G0630 Vigna mungo HOM05D004900 ORTHO05D006392 2.3e-83 312.4 181 82.9
MELO3C019505.2 Cucumis melo HOM05D004900 ORTHO05D006392 3.0e-83 312.0 181 82.9
Eucgr.I01148 Eucalyptus grandis HOM05D004900 ORTHO05D006392 3.0e-83 312.0 180 82.8
Ah.06g184040 Amaranthus hybridus HOM05D004900 ORTHO05D006392 4.0e-83 311.6 180 81.7
MBI03_g13466_MAGBIO Magnolia biondii HOM05D004900 ORTHO05D006392 4.0e-83 311.6 181 81.8
Gohir.D13G039300 Gossypium hirsutum HOM05D004900 ORTHO05D006392 5.2e-83 311.2 180 82.2
Gorai.013G044200 Gossypium raimondii HOM05D004900 ORTHO05D006392 5.2e-83 311.2 180 82.2
FAN27G2168 Fragaria x ananassa HOM05D004900 ORTHO05D006392 8.9e-83 310.5 180 81.1
Lj5A209T83 Lonicera japonica HOM05D004900 ORTHO05D006392 8.9e-83 310.5 180 80.6
Sc18g0004090 Simmondsia chinensis HOM05D004900 ORTHO05D006392 8.9e-83 310.5 181 80.1
EL10Ac4g08164 Beta vulgaris HOM05D004900 ORTHO05D006392 1.2e-82 310.1 180 80.6
Gohir.A13G040600 Gossypium hirsutum HOM05D004900 ORTHO05D006392 1.5e-82 309.7 180 82.2
Manes.10G071700 Manihot esculenta HOM05D004900 ORTHO05D006392 1.5e-82 309.7 180 80.6
MD05G1081500 Malus domestica HOM05D004900 ORTHO05D006392 2.0e-82 309.3 180 81.1
Cc02_g28520 Coffea canephora HOM05D004900 ORTHO05D006392 2.6e-82 308.9 180 81.7
Hund22922 Selenicereus undatus HOM05D004900 ORTHO05D006392 5.7e-82 307.8 181 80.7
HanXRQChr04g0128191 Helianthus annuus HOM05D004900 ORTHO05D006392 7.5e-82 307.4 180 81.1
Phvul.003G292100 Phaseolus vulgaris HOM05D004900 ORTHO05D006392 9.8e-82 307.0 180 82.2
Actinidia00438 Actinidia chinensis HOM05D004900 ORTHO05D006392 1.7e-81 306.2 180 80.0
AUR62034289 Chenopodium quinoa HOM05D004900 ORTHO05D006392 1.7e-81 306.2 180 79.4
Psat7g123960 Pisum sativum HOM05D004900 ORTHO05D006392 1.7e-81 306.2 180 81.1
MSTRG.16738 Avicennia marina HOM05D004900 ORTHO05D006392 2.2e-81 305.8 180 80.0
Sed0000080 Sechium edule HOM05D004900 ORTHO05D006392 2.2e-81 305.8 181 81.2
Ah.04g164910 Amaranthus hybridus HOM05D004900 ORTHO05D006392 2.8e-81 305.4 180 80.0
Ciclev10028067m.g Citrus clementina HOM05D004900 ORTHO05D006392 3.7e-81 305.1 180 82.8
THA.LOC104807271 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 3.7e-81 305.1 181 79.0
Thecc.02G101200 Theobroma cacao HOM05D004900 ORTHO05D006392 8.3e-81 303.9 180 81.7
arahy.Tifrunner.gnm1.ann1.AXQD4Y Arachis hypogaea HOM05D004900 ORTHO05D006392 1.1e-80 303.5 180 78.9
AUR62029383 Chenopodium quinoa HOM05D004900 ORTHO05D006392 1.1e-80 303.5 180 79.4
CSS0038145 Camellia sinensis var. sinensis HOM05D004900 ORTHO05D006392 1.4e-80 303.1 180 79.4
Potri.004G140800 Populus trichocarpa HOM05D004900 ORTHO05D006392 1.8e-80 302.8 180 77.8
Hund02212 Selenicereus undatus HOM05D004900 ORTHO05D006392 1.8e-80 302.8 180 80.0
Ca_18688_v3 Cicer arietinum L. HOM05D004900 ORTHO05D006392 2.4e-80 302.4 180 80.6
HanXRQChr09g0259251 Helianthus annuus HOM05D004900 ORTHO05D006392 2.4e-80 302.4 180 80.0
Medtr4g086020 Medicago truncatula HOM05D004900 ORTHO05D006392 2.4e-80 302.4 180 80.0
GSVIVG01031737001 Vitis vinifera HOM05D004900 ORTHO05D006392 2.4e-80 302.4 172 83.1
arahy.Tifrunner.gnm1.ann1.X7K798 Arachis hypogaea HOM05D004900 ORTHO05D006392 3.1e-80 302.0 180 78.3
DCAR_029058 Daucus carota HOM05D004900 ORTHO05D006392 4.1e-80 301.6 180 79.4
Lj4g0002152 Lotus japonicus HOM05D004900 ORTHO05D006392 4.1e-80 301.6 180 81.1
COL.COLO4_32650 Corchorus olitorius HOM05D004900 ORTHO05D006392 5.4e-80 301.2 180 81.1
ECA236G3626 Erigeron canadensis HOM05D004900 ORTHO05D006392 9.2e-80 300.4 180 79.4
Glyma.07G212800 Glycine max HOM05D004900 ORTHO05D006392 1.6e-79 299.7 180 78.9
Sabra04G0092700 Salix brachista HOM05D004900 ORTHO05D006392 1.6e-79 299.7 180 76.7
Lsat_1_v5_gn_7_86981 Lactuca sativa HOM05D004900 ORTHO05D006392 2.0e-79 299.3 180 78.9
Oeu009747.1 Olea europaea HOM05D004900 ORTHO05D006392 2.7e-79 298.9 180 81.7
Glyma.02G132100 Glycine max HOM05D004900 ORTHO05D006392 3.5e-79 298.5 180 79.4
Peaxi162Scf00016g01734 Petunia axillaris HOM05D004900 ORTHO05D006392 4.5e-79 298.1 180 77.8
TPR.G25435 Trifolium pratense HOM05D004900 ORTHO05D006392 4.5e-79 298.1 180 78.9
CAN.G1041.10 Capsicum annuum HOM05D004900 ORTHO05D006392 5.9e-79 297.7 180 78.3
THA.LOC104819578 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 5.9e-79 297.7 180 77.2
TWI31G0729 Tripterygium wilfordii HOM05D004900 ORTHO05D006392 5.9e-79 297.7 180 79.4
Nitab4.5_0018347g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 7.8e-79 297.4 180 77.2
CAN.G149.20 Capsicum annuum HOM05D004900 ORTHO05D006392 1.0e-78 297.0 180 77.2
CAN.G663.4 Capsicum annuum HOM05D004900 ORTHO05D006392 1.0e-78 297.0 180 77.2
Migut.B00351 Erythranthe guttata HOM05D004900 ORTHO05D006392 2.3e-78 295.8 180 78.9
Nitab4.5_0005249g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 2.3e-78 295.8 180 76.7
Rhsim11G0165400 Rhododendron simsii HOM05D004900 ORTHO05D006392 2.3e-78 295.8 182 77.5
Solyc10g050890.2 Solanum lycopersicum HOM05D004900 ORTHO05D006392 2.3e-78 295.8 180 76.7
Sopen10g022530 Solanum pennellii HOM05D004900 ORTHO05D006392 2.9e-78 295.4 180 76.1
PGSC0003DMG400008262 Solanum tuberosum HOM05D004900 ORTHO05D006392 5.0e-78 294.7 180 76.1
PSO170G4054 Papaver somniferum HOM05D004900 ORTHO05D006392 8.6e-78 293.9 181 77.3
PSO210G5341 Papaver somniferum HOM05D004900 ORTHO05D006392 1.1e-77 293.5 181 77.3
Sopen01g050850 Solanum pennellii HOM05D004900 ORTHO05D006392 4.3e-77 291.6 180 76.1
Solyc01g108630.3 Solanum lycopersicum HOM05D004900 ORTHO05D006392 9.5e-77 290.4 180 75.6
PGSC0003DMG400025823 Solanum tuberosum HOM05D004900 ORTHO05D006392 2.1e-76 289.3 180 75.0
Nitab4.5_0000876g0100 Nicotiana tabacum HOM05D004900 ORTHO05D006392 6.1e-76 287.7 180 75.0
CARHR105960 Cardamine hirsuta HOM05D004900 ORTHO05D006392 1.4e-75 286.6 180 75.6
Thhalv10022613m.g Eutrema salsugineum HOM05D004900 ORTHO05D006392 1.4e-75 286.6 180 77.2
CDE09G0425 Ceratophyllum demersum HOM05D004900 ORTHO05D006392 2.3e-75 285.8 181 73.5
Sp3g28890 Schrenkiella parvula HOM05D004900 ORTHO05D006392 5.2e-75 284.6 180 76.1
Aa31LG8G13280 Aethionema arabicum HOM05D004900 ORTHO05D006392 6.8e-75 284.3 180 73.3
AL3G47370 Arabidopsis lyrata HOM05D004900 ORTHO05D006392 2.6e-74 282.3 180 76.1
BcaB03g16309 Brassica carinata HOM05D004900 ORTHO05D006392 2.6e-74 282.3 180 75.6
A07p05130 Brassica napus HOM05D004900 ORTHO05D006392 3.4e-74 282.0 180 75.6
C07p08190 Brassica napus HOM05D004900 ORTHO05D006392 3.4e-74 282.0 180 75.6
BolC7t41235H Brassica oleracea HOM05D004900 ORTHO05D006392 3.4e-74 282.0 180 75.6
BraA07t28307Z Brassica rapa HOM05D004900 ORTHO05D006392 3.4e-74 282.0 180 75.6
BcaC04g23043 Brassica carinata HOM05D004900 ORTHO05D006392 5.8e-74 281.2 180 75.0
C09p12780 Brassica napus HOM05D004900 ORTHO05D006392 5.8e-74 281.2 180 75.0
Carub.0003s2939 Capsella rubella HOM05D004900 ORTHO05D006392 7.5e-74 280.8 180 75.0
BolC9t54165H Brassica oleracea HOM05D004900 ORTHO05D006392 9.8e-74 280.4 180 74.4
BcaB07g31785 Brassica carinata HOM05D004900 ORTHO05D006392 1.7e-73 279.6 180 74.4
BcaC06g36073 Brassica carinata HOM05D004900 ORTHO05D006392 1.7e-73 279.6 180 75.0
AT2G15620 Arabidopsis thaliana HOM05D004900 ORTHO05D006392 2.2e-73 279.3 180 75.0
BraA09t36723Z Brassica rapa HOM05D004900 ORTHO05D006392 2.2e-73 279.3 180 73.9
A09p10810 Brassica napus HOM05D004900 ORTHO05D006392 4.9e-73 278.1 180 73.3
unitig_0.g85 Utricularia gibba HOM05D004900 ORTHO05D006392 4.9e-73 278.1 181 71.8
HPP92_004223 Vanilla planifolia HOM05D004900 ORTHO05D006392 1.4e-72 276.6 181 70.2
SGA_v2.0_scaffold90G27642 Striga asiatica HOM05D004900 ORTHO05D006392 2.4e-72 275.8 168 75.0
Zm00001eb193660 Zea mays HOM05D004900 ORTHO05D006392 3.2e-72 275.4 182 71.4
Zm00001eb255880 Zea mays HOM05D004900 ORTHO05D006392 7.0e-72 274.2 182 71.4
HPP92_004227 Vanilla planifolia HOM05D004900 ORTHO05D006392 2.0e-71 272.7 181 69.6
ATR0009G021 Amborella trichopoda HOM05D004900 ORTHO05D006392 3.3e-69 265.4 177 71.2
Os01g0357100 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 5.6e-69 264.6 181 71.3
Lsat_1_v5_gn_7_86961 Lactuca sativa HOM05D004900 ORTHO05D006392 3.6e-68 261.9 160 76.2
SEGI_39412 Sequoiadendron giganteum HOM05D004900 ORTHO05D006392 1.8e-67 259.6 173 72.3
SMO200G0071 Selaginella moellendorffii HOM05D004900 ORTHO05D006392 3.0e-62 242.3 173 67.6
AagrBONN_evm.TU.Sc2ySwM_117.432 Anthoceros agrestis HOM05D004900 ORTHO05D006392 4.3e-61 238.4 173 67.6
CiPaw.05G006800 Carya illinoinensis HOM05D004900 ORTHO05D006392 4.1e-56 221.9 167 68.9
Pp3c27_6610 Physcomitrium patens HOM05D004900 ORTHO05D006392 2.7e-55 219.2 173 59.0
Mapoly0183s0004 Marchantia polymorpha HOM05D004900 ORTHO05D006392 3.0e-54 215.7 173 60.1
CBR_g49893 Chara braunii HOM05D004900 ORTHO05D006392 5.1e-54 214.9 178 59.0
Pp3c16_15880 Physcomitrium patens HOM05D004900 ORTHO05D006392 1.2e-52 210.3 173 55.5
Peaxi162Scf00003g01630 Petunia axillaris HOM05D004900 ORTHO05D006392 2.1e-52 209.5 135 74.1
vmacro02045 Vaccinium macrocarpon HOM05D004900 ORTHO05D006392 1.8e-51 206.5 120 80.0
AagrBONN_evm.TU.Sc2ySwM_117.307 Anthoceros agrestis HOM05D004900 ORTHO05D006392 6.0e-47 191.4 173 56.6
MCO01G555 Micromonas commoda HOM05D004900 ORTHO05D006392 7.1e-40 167.9 185 48.1
Cre09.g410750 Chlamydomonas reinhardtii HOM05D004900 ORTHO05D006392 3.0e-38 162.5 177 47.5
PRCOL_00002965 Prasinoderma coloniale HOM05D004900 ORTHO05D001484 9.6e-37 157.5 177 48.6
PRCOL_00004550 Prasinoderma coloniale HOM05D004900 ORTHO05D006392 2.8e-36 156.0 177 48.0
Nitab4.5_0001401g0030 Nicotiana tabacum HOM05D004900 ORTHO05D006392 5.3e-19 98.6 54 77.8
Cfa021071 Carpinus fangiana HOM05D004900 ORTHO05D006392 1.4e-06 57.4 103 29.1


User provided reference genes

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