Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.9e-91 338.2 271 100.0
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.0e-78 296.6 271 90.8
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.3e-76 288.5 271 91.1
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.7e-72 276.2 268 85.8
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 5.2e-71 271.9 266 88.3
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 7.0e-68 261.5 275 83.3
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.0e-67 260.0 271 84.1
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.7e-67 259.6 271 84.1
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 3.5e-67 259.2 275 82.5
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.0e-66 257.7 266 84.2
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.3e-66 257.3 267 83.9
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.7e-66 256.9 266 83.8
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 2.2e-66 256.5 273 82.4
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 2.9e-66 256.1 269 82.9
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 3.8e-66 255.8 266 84.2
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.5e-65 253.8 266 74.4
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.5e-65 253.8 271 83.4
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.9e-65 253.4 271 80.8
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.9e-65 253.4 271 83.0
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.5e-65 253.1 266 83.8
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.5e-65 253.1 266 83.8
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 2.5e-65 253.1 271 83.8
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 2.5e-65 253.1 266 83.8
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 3.2e-65 252.7 268 84.3
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 5.5e-65 251.9 271 83.0
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 5.5e-65 251.9 271 83.4
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 5.5e-65 251.9 271 83.4
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 7.2e-65 251.5 266 85.0
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 7.2e-65 251.5 271 83.4
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 7.2e-65 251.5 248 88.7
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 9.4e-65 251.1 274 77.7
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 1.2e-64 250.8 274 80.3
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 2.1e-64 250.0 266 82.0
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.6e-64 249.2 267 84.3
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 6.1e-64 248.4 271 81.5
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 6.1e-64 248.4 271 81.5
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 8.0e-64 248.1 266 83.5
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 1.4e-63 247.3 271 81.5
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.8e-63 246.9 266 83.8
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.8e-63 246.9 266 83.8
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.3e-63 246.5 273 83.2
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 4.0e-63 245.7 266 80.8
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 4.0e-63 245.7 269 82.2
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 6.8e-63 245.0 264 82.6
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 6.8e-63 245.0 264 82.6
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.2e-62 244.2 266 83.1
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.2e-62 244.2 270 81.5
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.5e-62 243.8 264 82.2
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.0e-62 243.4 268 82.5
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.0e-62 243.4 268 82.5
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.0e-62 243.4 264 81.8
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 2.6e-62 243.0 275 80.7
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 4.1e-60 235.7 252 84.9
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 5.4e-60 235.3 275 80.0
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 9.1e-60 234.6 273 80.6
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.2e-59 234.2 263 82.9
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.2e-59 234.2 273 79.9
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.7e-59 233.0 267 79.4
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 2.7e-59 233.0 265 81.1
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 4.5e-59 232.3 266 82.3
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.7e-59 231.5 267 79.0
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 7.7e-59 231.5 252 82.5
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 7.7e-59 231.5 267 80.1
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 3.8e-58 229.2 271 78.2
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 3.8e-58 229.2 272 77.9
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 5.0e-58 228.8 244 86.5
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.1e-57 227.6 265 81.1
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 4.2e-57 225.7 269 79.2
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 5.5e-57 225.3 273 78.4
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 9.5e-57 224.6 269 78.8
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.2e-56 224.2 269 78.8
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.1e-56 223.4 268 78.7
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 2.8e-56 223.0 271 76.0
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 6.1e-56 221.9 267 78.3
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 6.1e-56 221.9 268 78.7
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 6.1e-56 221.9 266 78.9
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.1e-56 221.9 271 55.0
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.0e-55 221.1 239 87.9
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 1.0e-55 221.1 243 84.8
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.8e-55 220.3 255 81.6
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 2.3e-55 219.9 251 81.7
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.0e-55 219.5 270 80.4
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 5.2e-55 218.8 250 82.4
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 5.2e-55 218.8 251 80.5
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 1.2e-54 217.6 267 77.9
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 2.0e-54 216.9 267 79.8
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 3.4e-54 216.1 267 77.5
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 4.4e-54 215.7 267 77.5
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 5.7e-54 215.3 269 78.4
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 5.7e-54 215.3 267 76.4
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 7.5e-54 214.9 267 78.7
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 9.8e-54 214.5 267 77.5
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.3e-53 214.2 267 77.5
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 1.7e-53 213.8 268 77.6
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 1.7e-53 213.8 269 78.1
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 1.7e-53 213.8 269 78.1
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 1.7e-53 213.8 269 78.1
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 1.7e-53 213.8 269 78.1
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.7e-53 213.8 268 79.1
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 2.8e-53 213.0 267 77.9
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 2.8e-53 213.0 268 76.1
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 3.7e-53 212.6 268 76.9
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 4.9e-53 212.2 267 78.7
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 6.3e-53 211.8 251 80.1
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 6.3e-53 211.8 264 72.3
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 8.3e-53 211.5 264 73.5
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 8.3e-53 211.5 262 77.9
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 1.1e-52 211.1 264 76.9
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 1.4e-52 210.7 267 78.3
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 1.4e-52 210.7 267 78.3
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 1.8e-52 210.3 270 75.2
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 1.8e-52 210.3 269 77.7
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 1.8e-52 210.3 266 77.4
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 2.4e-52 209.9 273 72.9
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 7.0e-52 208.4 234 88.0
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 1.2e-51 207.6 266 77.1
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.6e-51 207.2 255 78.4
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.0e-51 206.8 257 79.0
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 5.9e-51 205.3 257 76.7
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.0e-50 204.5 265 76.6
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 1.7e-50 203.8 267 75.3
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 2.9e-50 203.0 267 75.7
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.9e-50 203.0 230 87.8
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 6.6e-50 201.8 264 73.5
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 6.6e-50 201.8 264 73.5
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.5e-49 199.9 230 86.5
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 9.5e-49 198.0 257 77.8
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 9.5e-49 198.0 268 73.1
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 6.1e-48 195.3 271 72.0
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.0e-47 194.5 267 76.0
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 5.2e-47 192.2 271 69.4
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.2e-46 191.0 226 85.4
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 1.7e-45 187.2 262 73.7
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.2e-45 186.8 277 40.1
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 6.4e-45 185.3 261 72.4
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 6.4e-45 185.3 263 72.2
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.9e-44 183.7 229 83.8
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.9e-44 183.7 267 64.8
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 3.5e-43 179.5 265 71.7
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 1.2e-40 171.0 217 84.3
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 4.7e-40 169.1 100 81.0
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-39 167.5 237 78.5
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 8.9e-39 164.9 267 58.1
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 1.7e-34 150.6 210 82.9
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.4e-31 141.0 94 74.5
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 6.8e-31 138.7 83 79.5
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 3.7e-29 132.9 282 62.8
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.4e-28 131.0 273 64.1
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.4e-28 130.2 205 80.0
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.1e-27 127.1 85 70.6
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 2.1e-27 127.1 265 55.1
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 3.6e-24 116.3 82 68.3
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 5.2e-23 112.5 264 57.6
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 9.9e-22 108.2 86 67.4
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.3e-21 107.8 83 66.3
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 7.6e-14 82.0 53 75.5
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 1.1e-09 68.2 254 56.3
CiPaw.05G143800 Carya illinoinensis HOM05D000094 ORTHO05D002904 3.1e-07 60.1 97 39.2
arahy.Tifrunner.gnm1.ann1.VYJ8LR Arachis hypogaea HOM05D000094 ORTHO05D001056 4.0e-07 59.7 99 37.4
Aa31LG7G8000 Aethionema arabicum HOM05D000094 ORTHO05D002904 9.0e-07 58.5 100 38.0
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 9.0e-07 58.5 107 34.6
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 2.6e-06 57.0 50 50.0
RhsimUnG0169400 Rhododendron simsii HOM05D000094 ORTHO05D002904 3.4e-06 56.6 98 37.8
HPP92_007855 Vanilla planifolia HOM05D000168 ORTHO05D001118 4.5e-06 56.2 99 38.4
AagrBONN_evm.TU.Sc2ySwM_344.3554 Anthoceros agrestis HOM05D000094 ORTHO05D001056 5.8e-06 55.8 99 36.4
MBI06_g37371_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D006810 5.8e-06 55.8 98 36.7
Manes.01G019000 Manihot esculenta HOM05D000094 ORTHO05D001056 7.6e-06 55.5 100 36.0
FvH4_6g49690 Fragaria vesca HOM05D000094 ORTHO05D002904 9.9e-06 55.1 101 34.7
FAN14G5061 Fragaria x ananassa HOM05D000094 ORTHO05D002904 9.9e-06 55.1 101 34.7
TPR.G15150 Trifolium pratense HOM05D000094 ORTHO05D001056 9.9e-06 55.1 99 35.4


User provided reference genes

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