Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 4.7e-74 281.2 150 100.0
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.6e-53 213.0 150 75.3
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 7.3e-51 204.1 150 72.0
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 1.1e-49 200.3 150 71.3
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.1e-49 200.3 150 70.7
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.5e-48 196.4 150 70.0
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.5e-48 196.4 150 69.3
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 2.6e-48 195.7 150 70.7
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 2.6e-48 195.7 150 69.3
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 9.9e-48 193.7 152 69.1
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.7e-47 193.0 150 68.0
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 2.2e-47 192.6 150 68.0
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 2.9e-47 192.2 150 68.0
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 3.8e-47 191.8 150 66.0
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 4.9e-47 191.4 146 67.8
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 1.4e-46 189.9 150 64.7
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.4e-46 189.9 150 67.3
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.9e-46 189.5 150 66.7
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 2.4e-46 189.1 150 68.7
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 3.2e-46 188.7 150 68.7
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 4.2e-46 188.3 150 67.3
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 4.2e-46 188.3 150 66.0
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 5.4e-46 188.0 140 69.3
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 5.4e-46 188.0 150 66.7
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 7.1e-46 187.6 148 68.9
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.3e-46 187.2 150 66.7
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 9.3e-46 187.2 150 66.7
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 1.2e-45 186.8 150 66.0
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.2e-45 186.8 150 65.3
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-45 186.8 150 66.7
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 1.6e-45 186.4 149 65.8
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 2.7e-45 185.7 150 64.7
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 2.7e-45 185.7 140 68.6
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 3.5e-45 185.3 150 66.7
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 6.0e-45 184.5 142 66.9
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 2.3e-44 182.6 150 65.3
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 3.0e-44 182.2 150 63.3
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 5.1e-44 181.4 150 63.3
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.1e-44 181.4 142 65.5
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 8.7e-44 180.6 138 69.6
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.5e-43 179.1 140 65.7
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 7.3e-43 177.6 150 63.3
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.6e-42 176.4 150 63.3
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 2.1e-42 176.0 140 65.0
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 3.6e-42 175.3 141 63.8
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 8.1e-42 174.1 150 62.7
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 1.4e-41 173.3 150 60.7
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 1.8e-41 172.9 150 62.7
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 3.1e-41 172.2 150 58.0
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 4.0e-41 171.8 151 62.3
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 5.3e-41 171.4 151 62.3
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 9.0e-41 170.6 152 62.5
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.5e-40 169.9 150 62.7
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 2.6e-40 169.1 151 61.6
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 9.9e-40 167.2 150 64.0
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 9.9e-40 167.2 150 61.3
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.9e-39 165.6 121 68.6
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 6.4e-39 164.5 132 65.2
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 1.1e-38 163.7 150 62.0
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 4.2e-38 161.8 150 56.7
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 4.2e-38 161.8 155 58.7
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 5.4e-38 161.4 140 62.1
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 5.4e-38 161.4 152 60.5
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 9.3e-38 160.6 150 62.0
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 2.7e-37 159.1 145 58.6
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 7.9e-37 157.5 150 60.7
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 7.9e-37 157.5 151 58.3
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 1.3e-36 156.8 145 55.2
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 2.3e-36 156.0 146 58.9
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.3e-36 156.0 151 57.6
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.3e-36 156.0 151 57.6
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 5.1e-36 154.8 150 56.0
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 8.7e-36 154.1 122 67.2
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 8.7e-36 154.1 121 67.8
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-35 152.9 121 67.8
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-35 152.9 121 67.8
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.9e-35 152.9 119 65.5
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.3e-35 151.8 150 60.7
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 9.6e-35 150.6 141 58.2
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.6e-34 149.8 114 65.8
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.1e-33 147.1 111 68.5
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 2.4e-33 146.0 150 52.7
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.3e-33 144.8 138 55.8
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 6.9e-33 144.4 111 67.6
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 9.0e-33 144.1 151 56.3
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.2e-32 143.7 118 61.9
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.5e-32 143.3 150 54.7
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.5e-32 143.3 150 54.7
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 2.0e-32 142.9 121 61.2
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 2.6e-32 142.5 151 58.9
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 3.4e-32 142.1 150 55.3
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 9.9e-32 140.6 150 54.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 2.9e-31 139.0 128 59.4
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 8.4e-31 137.5 150 53.3
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.4e-30 136.7 150 51.3
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 4.2e-30 135.2 150 51.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 7.1e-30 134.4 151 55.0
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 2.7e-29 132.5 150 48.7
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 3.5e-29 132.1 150 50.0
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 6.0e-29 131.3 150 50.7
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 7.9e-29 131.0 150 50.7
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 7.9e-29 131.0 150 50.7
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 7.9e-29 131.0 150 50.7
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 1.3e-28 130.2 150 50.0
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 3.0e-28 129.0 150 50.0
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 3.0e-28 129.0 150 50.0
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 3.0e-28 129.0 150 49.3
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 3.0e-28 129.0 150 50.7
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 5.1e-28 128.3 112 59.8
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 6.7e-28 127.9 150 49.3
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.1e-27 127.1 125 56.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 1.1e-27 127.1 150 49.3
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 2.1e-26 122.9 111 59.5
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 2.1e-26 122.9 150 46.0
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 2.4e-25 119.4 151 47.0
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 2.7e-21 105.9 150 42.7
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.0e-20 104.0 79 64.6
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 6.3e-18 94.7 121 48.8
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 1.4e-17 93.6 76 64.5
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.4e-17 93.6 91 52.7
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.2e-15 86.3 102 47.1
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 2.9e-15 85.9 77 61.0
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.0e-15 85.1 102 47.1
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 4.2e-14 82.0 92 50.0
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 1.2e-13 80.5 58 63.8
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.2e-13 80.5 89 49.4
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 4.6e-13 78.6 129 40.3
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.0e-12 77.4 62 66.1
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.3e-12 76.3 92 47.8
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 6.7e-12 74.7 135 38.5
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.5e-11 73.6 133 44.4
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.5e-11 73.6 133 44.4
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.3e-11 72.4 69 50.7
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 5.3e-09 65.1 92 46.7
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.0e-08 63.2 96 45.8


User provided reference genes

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