Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 5.9e-208 727.2 357 100.0
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 8.4e-170 600.5 354 83.1
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 2.5e-166 589.0 375 76.8
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 7.3e-166 587.4 354 81.6
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 8.1e-165 583.9 354 79.1
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 5.8e-163 577.8 355 80.0
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 3.8e-162 575.1 357 79.0
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 6.4e-162 574.3 354 78.0
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 8.4e-162 573.9 352 79.8
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 1.4e-161 573.2 356 78.4
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 4.2e-161 571.6 348 78.7
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 5.4e-161 571.2 352 79.8
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.6e-160 569.7 356 78.4
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 2.1e-160 569.3 354 78.0
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 2.3e-159 565.8 356 78.4
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 3.0e-159 565.5 354 78.0
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 8.7e-159 563.9 346 79.5
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 1.9e-158 562.8 355 77.7
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 3.3e-158 562.0 359 76.9
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 4.3e-158 561.6 347 78.7
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 7.3e-158 560.8 348 79.6
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 7.3e-158 560.8 361 76.2
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 7.3e-158 560.8 356 78.4
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 1.6e-157 559.7 353 77.1
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.6e-157 559.7 347 78.4
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 3.6e-157 558.5 357 75.9
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 8.1e-157 557.4 401 71.8
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.4e-156 556.6 357 76.2
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 2.4e-156 555.8 360 75.6
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 3.1e-156 555.4 346 76.6
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 9.0e-156 553.9 354 75.7
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 2.0e-155 552.7 354 75.4
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 5.8e-155 551.2 387 70.8
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 9.9e-155 550.4 355 77.2
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 2.2e-154 549.3 354 75.4
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 6.4e-154 547.7 306 85.0
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 1.1e-153 547.0 354 76.8
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.1e-153 547.0 332 78.6
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 4.2e-153 545.0 306 84.3
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 7.1e-153 544.3 351 73.8
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 1.6e-152 543.1 351 73.5
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 2.1e-152 542.7 302 86.4
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 2.1e-152 542.7 351 73.5
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 2.7e-152 542.3 362 73.2
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 2.7e-152 542.3 354 72.3
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 2.7e-152 542.3 355 74.6
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 4.6e-152 541.6 362 73.2
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 1.7e-151 539.7 354 75.4
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 1.7e-151 539.7 354 74.9
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 2.3e-151 539.3 307 84.0
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 6.6e-151 537.7 328 77.7
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 8.7e-151 537.3 391 69.8
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 1.1e-150 537.0 347 76.1
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 4.3e-150 535.0 354 72.0
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.3e-149 533.5 317 79.8
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 1.4e-148 530.0 339 75.2
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 3.1e-148 528.9 321 77.6
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 6.9e-148 527.7 364 72.5
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 9.9e-147 523.9 356 71.3
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 1.3e-146 523.5 306 82.0
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 1.3e-146 523.5 384 68.5
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 2.9e-146 522.3 351 71.8
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 3.8e-146 521.9 304 81.6
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 1.9e-145 519.6 351 72.4
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 3.2e-145 518.8 302 81.5
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 4.2e-145 518.5 351 72.1
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 4.2e-145 518.5 331 76.4
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 7.1e-145 517.7 352 71.9
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 2.7e-144 515.8 351 71.8
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 2.7e-144 515.8 352 72.2
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 2.7e-144 515.8 351 70.9
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 7.9e-144 514.2 315 79.4
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.0e-143 513.8 356 71.1
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.9e-142 509.6 302 80.5
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 3.3e-142 508.8 356 70.8
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 3.3e-142 508.8 356 70.8
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 5.6e-142 508.1 351 70.7
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 1.1e-140 503.8 327 77.7
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 5.3e-140 501.5 362 71.3
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 1.4e-137 493.4 304 76.0
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 4.3e-134 481.9 347 68.0
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 4.5e-131 471.9 345 69.0
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 5.9e-131 471.5 301 75.1
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 1.2e-128 463.8 280 77.5
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.4e-124 450.3 297 74.4
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 9.1e-124 447.6 323 69.3
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 1.2e-123 447.2 359 65.2
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 3.0e-119 432.6 315 64.1
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 3.0e-119 432.6 315 64.1
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 3.3e-118 429.1 309 63.8
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 7.4e-118 427.9 252 81.7
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 5.3e-116 421.8 302 64.9
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 5.9e-115 418.3 272 74.6
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 5.0e-114 415.2 272 75.7
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 2.2e-101 373.2 280 64.3
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.8e-100 370.2 241 75.9
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 9.8e-94 347.8 303 53.5
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.9e-89 333.6 384 50.8
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 1.9e-89 333.6 306 52.6
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 2.6e-86 323.2 184 84.2
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 9.8e-86 321.2 266 59.4
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 5.6e-81 305.4 226 67.7
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 8.0e-80 301.6 311 48.2
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 2.0e-78 297.0 241 60.2
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.6e-72 277.3 244 61.9
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 7.5e-70 268.5 205 66.3
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.6e-59 234.2 124 87.1
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.6e-59 234.2 124 87.1
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 1.9e-52 210.7 122 77.0
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 5.4e-52 209.1 122 76.2
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 4.6e-51 206.1 182 62.6
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 6.6e-50 202.2 137 74.5
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 6.2e-40 169.1 103 72.8
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 3.1e-39 166.8 297 37.0
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 4.6e-35 152.9 307 30.3
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 5.1e-34 149.4 144 56.9
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 1.5e-33 147.9 134 61.2
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.2e-30 138.3 101 68.3
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 4.5e-30 136.3 79 78.5
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 8.4e-29 132.1 117 60.7
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.4e-23 114.8 101 60.4
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.8e-23 114.4 183 41.0
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 4.0e-23 113.2 145 49.0
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 7.6e-22 109.0 128 46.9
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 6.5e-21 105.9 66 68.2
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 7.1e-20 102.4 184 39.1
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 5.3e-15 86.3 53 77.4
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 6.5e-13 79.3 64 59.4
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 4.2e-12 76.6 48 70.8
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.3e-10 71.6 58 65.5
CSS0045021 Camellia sinensis var. sinensis HOM05D001625 ORTHO05D008114 3.1e-07 60.5 281 23.8
CSS0010383 Camellia sinensis var. sinensis HOM05D056514 ORTHO05D007501 5.9e-06 56.2 55 49.1
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 5.9e-06 56.2 220 24.1


User provided reference genes

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