Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 0.0e+00 1205.7 742 100.0
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 3.6e-167 592.8 761 62.4
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 7.3e-160 568.5 736 62.0
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.2e-138 498.0 730 58.9
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 4.8e-135 486.1 724 58.3
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 2.4e-134 483.8 742 58.0
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 1.0e-129 468.4 714 58.1
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 2.3e-129 467.2 696 59.9
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 1.5e-128 464.5 679 60.1
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 4.9e-124 449.5 730 55.2
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 1.8e-121 441.0 785 52.2
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 3.4e-117 426.8 758 54.0
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 7.7e-117 425.6 704 57.0
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 6.7e-113 412.5 684 55.4
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 6.9e-110 402.5 765 52.5
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 1.7e-108 397.9 740 53.1
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 1.4e-105 388.3 731 52.9
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 1.4e-105 388.3 731 52.9
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 5.1e-105 386.3 740 52.6
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 5.7e-104 382.9 725 53.4
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 1.7e-103 381.3 689 55.3
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 1.6e-98 364.8 694 55.9
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 2.1e-98 364.4 737 51.6
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 2.7e-98 364.0 738 50.8
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 2.0e-96 357.8 737 50.2
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 7.4e-96 355.9 709 44.7
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 9.7e-96 355.5 737 50.1
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 2.2e-95 354.4 657 54.6
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 3.7e-95 353.6 740 50.9
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 3.7e-95 353.6 723 51.2
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 7.7e-93 345.9 728 51.2
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 1.3e-92 345.1 696 54.6
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 3.8e-92 343.6 740 50.0
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 3.8e-92 343.6 714 53.8
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 6.5e-92 342.8 784 40.2
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 9.4e-91 339.0 748 48.7
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 2.8e-87 327.4 714 49.9
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 3.7e-87 327.0 753 48.6
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 7.0e-86 322.8 750 47.3
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.5e-85 320.5 748 48.7
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 3.5e-85 320.5 729 50.3
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.0e-84 318.9 687 51.8
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 2.9e-84 317.4 735 49.9
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 9.4e-83 312.4 738 48.4
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 1.6e-82 311.6 731 48.8
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 2.1e-82 311.2 718 49.7
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 2.7e-82 310.8 688 51.6
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 4.7e-82 310.1 720 49.6
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 1.0e-81 308.9 715 50.8
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 1.4e-81 308.5 731 49.5
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 6.8e-81 306.2 726 49.9
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 1.2e-80 305.4 688 51.5
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 1.1e-78 298.9 722 49.3
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 5.4e-78 296.6 607 53.7
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 5.9e-77 293.1 688 50.4
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 3.8e-76 290.4 737 47.8
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 8.0e-74 282.7 705 47.5
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 3.0e-73 280.8 709 48.1
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 5.2e-73 280.0 688 46.4
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 4.4e-72 276.9 728 47.8
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 1.1e-70 272.3 735 46.9
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 5.9e-69 266.5 674 48.7
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 1.5e-67 261.9 734 45.1
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 1.9e-67 261.5 724 46.0
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 1.9e-67 261.5 682 47.4
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 1.6e-66 258.5 695 47.5
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 2.1e-66 258.1 687 49.2
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 4.7e-66 256.9 617 49.4
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 1.8e-65 255.0 695 49.2
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.2e-64 252.3 254 53.5
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 2.6e-64 251.1 700 45.6
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 4.9e-63 246.9 685 49.1
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 7.0e-62 243.0 691 47.5
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 4.6e-61 240.4 685 47.9
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 3.9e-60 237.3 723 46.1
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 8.6e-60 236.1 701 46.1
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.1e-59 235.7 683 48.2
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 3.3e-59 234.2 677 46.2
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 9.5e-59 232.6 682 46.9
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 2.1e-58 231.5 738 45.1
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.8e-58 231.1 683 46.9
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 8.1e-58 229.6 705 46.2
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 5.2e-57 226.9 732 44.1
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.2e-56 225.7 551 51.5
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 1.5e-56 225.3 481 56.1
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 1.5e-56 225.3 730 44.4
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 2.0e-56 224.9 276 85.1
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 1.3e-55 222.2 759 43.6
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 3.7e-55 220.7 529 53.1
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 1.4e-54 218.8 427 61.4
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 1.2e-53 215.7 265 87.9
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 3.9e-52 210.7 306 69.9
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 6.6e-52 209.9 508 53.7
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 9.5e-51 206.1 660 45.8
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.1e-49 202.6 439 59.2
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.4e-49 202.2 286 78.3
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 1.4e-49 202.2 757 42.3
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 6.8e-49 199.9 701 35.2
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.2e-47 194.9 739 43.4
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 7.1e-46 189.9 794 40.4
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 3.5e-45 187.6 687 43.7
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 6.6e-44 183.3 741 43.7
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 8.7e-36 156.4 188 48.9
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 7.1e-30 136.7 108 85.2
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.4e-22 112.5 100 80.0
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 5.5e-22 110.5 93 55.9
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 7.1e-22 110.2 104 51.9
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 2.7e-21 108.2 94 55.3
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 2.3e-20 105.1 113 45.1
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.5e-19 102.4 154 37.0
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 8.1e-18 96.7 361 28.5
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.1e-17 96.3 236 30.1
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.2e-14 84.7 101 41.6
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 1.6e-13 82.4 114 45.6
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.3e-12 79.3 101 39.6
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 5.7e-11 73.9 116 36.2
Ciclev10028828m.g Citrus clementina HOM05D005996 ORTHO05D007507 5.7e-11 73.9 394 28.2
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 9.6e-11 73.2 69 53.6
Actinidia21406 Actinidia chinensis HOM05D005996 ORTHO05D007507 1.9e-06 58.9 182 31.3
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 2.5e-06 58.5 86 38.4
SMO301G0041 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 2.5e-06 58.5 54 51.9
SMO245G0010 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 4.2e-06 57.8 49 57.1


User provided reference genes

Program Settings