Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.5e-59 232.6 120 100.0
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.2e-43 179.9 121 78.5
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 5.5e-33 144.4 90 85.6
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 1.2e-27 126.7 116 58.6
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.0e-27 125.9 117 59.8
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 7.7e-27 124.0 110 60.0
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.1e-25 120.2 116 59.5
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.5e-25 119.8 115 55.7
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 9.4e-25 117.1 116 55.2
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 2.7e-24 115.5 115 55.7
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 2.7e-24 115.5 116 56.9
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 6.1e-24 114.4 115 54.8
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.4e-23 113.2 115 54.8
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.4e-23 113.2 115 54.8
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 1.4e-23 113.2 115 54.8
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.8e-23 112.8 117 51.3
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 4.0e-23 111.7 117 54.7
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 5.2e-23 111.3 118 55.1
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 8.8e-23 110.5 117 54.7
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 2.0e-22 109.4 119 54.6
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.6e-22 109.0 114 53.5
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 9.7e-22 107.1 112 53.6
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.3e-21 106.7 118 50.8
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.2e-21 105.9 117 51.3
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.2e-21 105.9 119 55.5
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 4.8e-21 104.8 129 47.3
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.1e-20 103.6 118 52.5
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 1.4e-20 103.2 121 52.9
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 7.0e-20 100.9 117 48.7
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 7.0e-20 100.9 111 49.5
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 9.1e-20 100.5 121 49.6
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.2e-19 100.1 108 55.6
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 2.0e-19 99.4 118 51.7
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.0e-18 97.1 118 50.0
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.3e-18 96.7 80 68.8
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 2.9e-18 95.5 119 49.6
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 8.5e-18 94.0 115 51.3
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 8.5e-18 94.0 150 43.3
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 1.9e-17 92.8 119 48.7
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.9e-17 92.8 120 48.3
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 2.5e-17 92.4 118 49.2
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.5e-17 92.4 120 49.2
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 3.2e-17 92.0 121 52.1
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 4.2e-17 91.7 143 44.1
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 7.2e-17 90.9 114 50.0
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.4e-17 90.5 78 56.4
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.2e-16 90.1 114 49.1
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.6e-16 89.7 70 60.0
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.1e-16 89.4 78 55.1
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.7e-16 88.2 114 49.1
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 6.1e-16 87.8 120 50.8
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 8.0e-16 87.4 85 55.3
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.4e-15 86.7 123 47.2
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.8e-15 86.3 82 53.7
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 2.3e-15 85.9 121 45.5
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.0e-15 85.5 117 47.0
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 5.2e-15 84.7 116 45.7
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 6.8e-15 84.3 136 42.6
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 1.2e-14 83.6 69 62.3
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.5e-14 83.2 117 47.0
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.6e-14 82.4 115 44.3
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 3.4e-14 82.0 69 59.4
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 3.4e-14 82.0 121 44.6
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 5.7e-14 81.3 113 46.0
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 7.5e-14 80.9 77 54.5
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.3e-13 80.1 108 50.0
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.7e-13 79.7 115 44.3
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 2.2e-13 79.3 119 45.4
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 2.2e-13 79.3 118 45.8
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 2.8e-13 79.0 118 44.1
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 3.7e-13 78.6 116 41.4
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.8e-13 78.2 120 44.2
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 8.3e-13 77.4 122 41.0
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 1.1e-12 77.0 118 44.9
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.1e-12 77.0 113 46.9
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.1e-12 77.0 113 46.9
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.1e-12 77.0 118 40.7
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.1e-12 77.0 118 40.7
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.4e-12 76.6 78 55.1
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.8e-12 76.3 115 42.6
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 1.8e-12 76.3 141 39.0
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 2.4e-12 75.9 76 55.3
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.4e-12 75.9 134 38.1
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 2.4e-12 75.9 116 41.4
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.1e-12 75.5 118 45.8
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.4e-12 74.7 133 39.8
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 5.4e-12 74.7 118 44.9
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 9.1e-12 73.9 119 44.5
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.6e-11 73.2 71 54.9
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 2.0e-11 72.8 58 60.3
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 2.7e-11 72.4 113 45.1
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 2.7e-11 72.4 109 42.2
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.5e-11 72.0 118 44.9
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 5.9e-11 71.2 66 56.1
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 5.9e-11 71.2 114 46.5
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 5.9e-11 71.2 114 46.5
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.0e-10 70.5 116 41.4
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.3e-10 70.1 104 42.3
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 2.9e-10 68.9 120 41.7
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 3.8e-10 68.6 117 43.6
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 5.0e-10 68.2 97 46.4
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 5.0e-10 68.2 116 39.7
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 5.0e-10 68.2 112 43.8
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 6.6e-10 67.8 94 46.8
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 8.6e-10 67.4 114 41.2
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 8.6e-10 67.4 116 44.0
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.1e-09 67.0 123 39.0
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 1.1e-09 67.0 44 72.7
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 1.1e-09 67.0 70 54.3
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 2.5e-09 65.9 110 40.0
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 2.5e-09 65.9 89 46.1
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 3.3e-09 65.5 63 52.4
Potri.009G089900 Populus trichocarpa HOM05D004288 ORTHO05D004997 3.3e-09 65.5 120 42.5
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 3.3e-09 65.5 83 44.6
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 3.3e-09 65.5 100 39.0
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 4.2e-09 65.1 107 40.2
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 5.5e-09 64.7 120 43.3
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 1.2e-08 63.5 80 45.0
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 1.6e-08 63.2 113 41.6
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 2.1e-08 62.8 55 61.8
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 2.8e-08 62.4 79 45.6
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 3.6e-08 62.0 74 44.6
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 3.6e-08 62.0 123 34.1
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 4.7e-08 61.6 120 38.3
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 4.7e-08 61.6 105 37.1
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 6.1e-08 61.2 67 53.7
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 6.1e-08 61.2 46 58.7
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 8.0e-08 60.8 109 43.1
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 1.0e-07 60.5 44 63.6
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 1.0e-07 60.5 120 41.7
SEGI_20698 Sequoiadendron giganteum HOM05D057447 ORTHO05D050965 1.4e-07 60.1 94 42.6
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 2.3e-07 59.3 51 58.8
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 2.3e-07 59.3 53 58.5
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 5.2e-07 58.2 71 40.8
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 5.2e-07 58.2 110 36.4
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 6.8e-07 57.8 76 44.7
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 6.8e-07 57.8 114 39.5
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 6.8e-07 57.8 103 36.9
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 1.2e-06 57.0 38 68.4
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 1.2e-06 57.0 52 59.6
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 3.4e-06 55.5 119 37.0
TAR374G0166 Trochodendron aralioides HOM05D004288 ORTHO05D414475 3.4e-06 55.5 33 87.9
HPP92_013399 Vanilla planifolia HOM05D059585 ORTHO05D004997 9.8e-06 53.9 117 35.9


User provided reference genes

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