Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 3.6e-67 258.1 125 100.0
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 8.5e-61 236.9 123 91.1
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.2e-60 234.6 123 88.6
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.7e-59 231.9 122 87.7
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 3.3e-57 224.9 124 84.7
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 1.7e-56 222.6 123 85.4
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 3.7e-56 221.5 123 82.9
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 8.2e-56 220.3 123 82.1
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 2.4e-55 218.8 123 84.6
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 4.1e-55 218.0 122 81.1
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 5.3e-55 217.6 123 82.1
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 5.3e-55 217.6 123 81.3
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 9.1e-55 216.9 124 80.6
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 9.1e-55 216.9 123 82.1
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 1.2e-54 216.5 123 80.5
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 1.6e-54 216.1 123 81.3
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 2.6e-54 215.3 123 82.1
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 3.5e-54 214.9 123 80.5
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 3.5e-54 214.9 123 81.3
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 7.7e-54 213.8 123 81.3
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 7.7e-54 213.8 124 81.5
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 1.0e-53 213.4 123 80.5
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 1.3e-53 213.0 123 82.1
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.7e-53 212.6 123 80.5
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 2.9e-53 211.8 123 77.2
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 3.8e-53 211.5 123 80.5
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 5.0e-53 211.1 124 78.2
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 6.5e-53 210.7 123 81.3
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 6.5e-53 210.7 123 76.4
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 8.5e-53 210.3 124 79.0
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 8.5e-53 210.3 123 79.7
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 8.5e-53 210.3 123 78.0
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.1e-52 209.9 122 79.5
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 1.1e-52 209.9 124 79.0
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 1.1e-52 209.9 123 77.2
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.1e-52 209.9 123 76.4
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 1.5e-52 209.5 123 78.9
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.5e-52 209.5 124 79.0
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 1.5e-52 209.5 123 79.7
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.5e-52 209.5 123 79.7
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 1.5e-52 209.5 123 79.7
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 1.5e-52 209.5 123 78.0
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 1.5e-52 209.5 121 78.5
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 1.9e-52 209.1 123 77.2
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 1.9e-52 209.1 123 79.7
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 1.9e-52 209.1 123 78.0
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 1.9e-52 209.1 121 79.3
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 2.5e-52 208.8 123 78.9
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 2.5e-52 208.8 123 77.2
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 3.2e-52 208.4 124 77.4
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 3.2e-52 208.4 123 77.2
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 4.2e-52 208.0 123 77.2
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 5.5e-52 207.6 124 75.0
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 7.2e-52 207.2 123 78.0
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 7.2e-52 207.2 123 77.2
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 9.4e-52 206.8 123 77.2
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 9.4e-52 206.8 124 77.4
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 9.4e-52 206.8 123 77.2
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.2e-51 206.5 121 76.9
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 1.6e-51 206.1 123 77.2
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 2.1e-51 205.7 124 74.2
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.7e-51 205.3 123 74.8
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 2.7e-51 205.3 123 77.2
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 3.6e-51 204.9 123 75.6
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 3.6e-51 204.9 123 77.2
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 4.7e-51 204.5 123 76.4
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 4.7e-51 204.5 126 77.0
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 4.7e-51 204.5 126 77.0
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 4.7e-51 204.5 124 75.8
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 4.7e-51 204.5 123 78.0
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 6.1e-51 204.1 123 74.8
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 6.1e-51 204.1 123 74.8
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 8.0e-51 203.8 123 74.8
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 1.0e-50 203.4 123 74.0
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 1.0e-50 203.4 123 78.0
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.4e-50 203.0 124 75.8
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 1.4e-50 203.0 126 76.2
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 2.3e-50 202.2 124 76.6
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 2.3e-50 202.2 124 75.0
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 2.3e-50 202.2 121 74.4
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 3.0e-50 201.8 125 74.4
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 3.0e-50 201.8 125 76.0
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 4.0e-50 201.4 123 74.8
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 4.0e-50 201.4 126 74.6
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 5.2e-50 201.1 123 76.4
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 6.7e-50 200.7 123 74.0
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 6.7e-50 200.7 129 70.5
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 8.8e-50 200.3 125 76.0
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 8.8e-50 200.3 123 74.8
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 1.2e-49 199.9 125 74.4
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 1.2e-49 199.9 124 77.4
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.5e-49 199.5 125 75.2
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 1.5e-49 199.5 116 81.0
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.5e-49 199.5 123 74.8
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 2.0e-49 199.1 125 74.4
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 2.6e-49 198.7 125 76.0
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 2.6e-49 198.7 123 73.2
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 3.3e-49 198.4 123 72.4
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 3.3e-49 198.4 125 74.4
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 4.4e-49 198.0 125 74.4
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 4.4e-49 198.0 123 74.0
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 5.7e-49 197.6 128 71.1
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 5.7e-49 197.6 128 71.1
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 7.5e-49 197.2 125 74.4
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 7.5e-49 197.2 125 74.4
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 1.7e-48 196.1 124 71.8
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.7e-48 196.1 122 72.1
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 2.8e-48 195.3 127 71.7
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 2.8e-48 195.3 127 71.7
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 2.8e-48 195.3 116 75.9
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.7e-48 194.9 125 73.6
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 3.7e-48 194.9 124 75.0
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 4.8e-48 194.5 125 72.0
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 4.8e-48 194.5 125 72.0
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 4.8e-48 194.5 116 75.9
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 6.3e-48 194.1 126 71.4
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 6.3e-48 194.1 123 73.2
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 8.2e-48 193.7 125 74.4
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 8.2e-48 193.7 124 75.8
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 1.8e-47 192.6 127 70.9
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.4e-47 192.2 124 69.4
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 4.1e-47 191.4 125 72.0
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 7.0e-47 190.7 125 72.0
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 7.0e-47 190.7 125 72.0
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 9.1e-47 190.3 109 79.8
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 2.0e-46 189.1 125 72.0
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 2.7e-46 188.7 125 72.0
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 4.5e-46 188.0 125 72.0
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 1.0e-45 186.8 123 69.1
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.3e-45 186.4 116 76.7
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 2.2e-45 185.7 125 71.2
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 5.0e-45 184.5 125 68.0
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.0e-45 184.5 125 70.4
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 5.0e-45 184.5 123 67.5
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 8.5e-45 183.7 123 66.7
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 1.9e-44 182.6 123 68.3
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 3.2e-44 181.8 121 68.6
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.2e-44 181.8 121 68.6
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 3.2e-44 181.8 121 68.6
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 4.2e-44 181.4 118 72.0
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 5.5e-44 181.0 116 72.4
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 1.6e-43 179.5 123 63.4
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 1.6e-43 179.5 124 69.4
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 2.7e-43 178.7 115 73.9
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 3.6e-43 178.3 122 68.0
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 6.1e-43 177.6 122 67.2
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 1.0e-42 176.8 113 73.5
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 1.0e-42 176.8 118 69.5
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 1.4e-42 176.4 121 67.8
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 4.8e-40 167.9 114 66.7
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 3.1e-39 165.2 122 65.6
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 5.9e-38 161.0 122 60.7
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 2.9e-37 158.7 123 61.8
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.0e-34 150.2 87 75.9
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 1.3e-32 143.3 132 50.0
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 8.3e-32 140.6 106 62.3
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.5e-30 134.8 106 64.2
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 4.5e-30 134.8 131 47.3
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 1.1e-28 130.2 122 50.8
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 7.3e-28 127.5 123 53.7
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 7.3e-28 127.5 132 46.2
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.3e-24 116.7 115 50.4
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 1.1e-23 113.6 68 76.5
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 2.7e-22 109.0 122 46.7
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.9e-20 102.8 63 68.3
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 2.1e-19 99.4 68 64.7
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.0e-17 92.8 57 73.7
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 4.0e-10 68.6 39 69.2


User provided reference genes

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