Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 0.0e+00 1195.6 629 100.0
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 5.8e-275 950.7 553 93.1
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 8.6e-186 654.4 557 66.8
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 6.0e-171 605.1 559 62.4
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 7.1e-156 555.1 563 59.0
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.6e-155 553.9 557 58.2
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.8e-146 523.9 571 56.0
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 1.8e-146 523.9 559 56.0
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 4.3e-145 519.2 592 55.4
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 4.3e-145 519.2 559 56.4
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.5e-142 510.8 568 54.6
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 3.4e-142 509.6 563 52.4
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 9.9e-142 508.1 557 53.9
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 5.5e-140 502.3 559 53.7
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 2.7e-139 500.0 561 52.6
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 3.5e-139 499.6 558 53.4
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 6.0e-139 498.8 562 55.2
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.8e-138 497.3 554 55.4
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 3.3e-137 493.0 560 55.0
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 5.6e-137 492.3 569 52.7
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.8e-136 490.0 560 54.6
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 3.7e-136 489.6 569 52.7
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.1e-135 488.0 566 51.9
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.2e-134 484.6 558 54.8
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.2e-134 484.6 558 52.5
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 2.6e-134 483.4 558 52.3
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.7e-133 480.7 558 52.3
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.2e-133 480.3 561 52.0
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 4.9e-133 479.2 499 56.9
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 6.5e-133 478.8 560 53.2
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 1.9e-132 477.2 561 53.8
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.6e-131 474.2 555 55.9
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.5e-131 473.0 555 50.3
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 4.6e-131 472.6 559 52.2
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 7.9e-131 471.9 611 49.9
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.3e-128 464.5 505 55.2
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.1e-127 459.9 554 51.8
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.5e-126 457.6 557 51.9
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 2.6e-126 456.8 563 52.4
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 7.6e-126 455.3 560 50.5
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.3e-125 454.5 566 49.8
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 1.3e-125 454.5 564 51.8
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.9e-125 453.4 577 51.0
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.9e-125 453.4 566 51.6
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 9.3e-124 448.4 638 47.0
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 7.9e-123 445.3 561 49.7
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.0e-122 443.4 553 51.2
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.4e-119 434.5 558 51.4
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 2.6e-118 430.3 559 52.2
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 2.6e-118 430.3 600 46.7
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 3.4e-118 429.9 554 48.6
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 3.4e-118 429.9 666 43.2
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 4.5e-118 429.5 564 49.1
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.2e-117 427.2 582 49.3
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 2.7e-115 420.2 559 52.2
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 4.7e-115 419.5 567 51.9
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.0e-114 418.3 561 48.7
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 2.3e-114 417.2 555 48.6
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 2.6e-113 413.7 565 46.7
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 4.4e-113 412.9 566 46.8
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 7.4e-113 412.1 557 48.8
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 9.1e-111 405.2 561 50.1
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.2e-110 404.8 562 50.2
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 4.5e-110 402.9 564 46.6
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 2.2e-109 400.6 558 46.6
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 6.5e-109 399.1 563 49.7
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 6.1e-107 392.5 573 47.5
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.4e-106 391.3 573 46.8
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 5.2e-106 389.4 568 45.4
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.1e-105 388.3 551 45.4
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 2.0e-105 387.5 539 47.9
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 2.0e-105 387.5 574 45.5
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.3e-104 384.8 576 49.5
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 2.2e-104 384.0 572 46.5
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 1.1e-103 381.7 568 47.5
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 5.3e-103 379.4 555 44.3
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.2e-102 378.3 476 50.6
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.0e-101 375.2 563 45.8
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.3e-101 374.8 565 44.6
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.5e-100 371.3 557 45.6
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.2e-100 370.2 557 45.4
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 4.2e-100 369.8 561 46.2
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 2.1e-99 367.5 555 44.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 8.0e-99 365.5 476 49.8
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 2.0e-97 360.9 500 46.4
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.0e-97 360.9 554 45.1
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.7e-96 357.8 566 45.8
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 8.2e-96 355.5 558 44.3
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.8e-95 354.4 551 43.9
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.8e-95 354.4 573 45.7
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.4e-95 354.0 558 45.5
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 3.1e-95 353.6 525 45.7
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 8.5e-93 345.5 463 47.9
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.1e-92 345.1 560 45.0
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.9e-92 344.4 569 43.9
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.2e-92 343.2 573 44.0
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 9.4e-92 342.0 566 42.4
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.6e-91 341.3 571 44.1
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.7e-91 339.7 573 43.6
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 6.1e-91 339.3 553 42.5
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 5.7e-89 332.8 556 41.9
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 2.2e-88 330.9 560 45.2
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 4.8e-88 329.7 435 50.1
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 1.6e-86 324.7 563 44.2
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 4.5e-86 323.2 562 43.8
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 2.9e-85 320.5 558 41.9
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 1.1e-84 318.5 558 42.8
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.5e-84 318.2 557 42.0
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 4.0e-82 310.1 565 41.6
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 4.0e-82 310.1 565 41.6
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 2.7e-78 297.4 366 51.4
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.2e-75 288.5 192 81.2
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 4.7e-75 286.6 591 38.4
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 2.3e-74 284.3 559 40.8
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 2.2e-72 277.7 553 40.5
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 2.2e-72 277.7 553 40.5
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 3.7e-72 276.9 553 38.3
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.0e-69 268.9 310 55.2
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.2e-65 255.4 306 52.3
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 1.4e-63 248.4 407 45.5
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.5e-60 238.4 318 47.8
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 7.3e-60 236.1 553 36.5
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.3e-56 222.6 394 41.6
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 3.6e-51 207.2 263 51.3
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 6.8e-50 203.0 587 33.0
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.6e-49 201.1 431 37.8
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 3.0e-45 187.6 610 29.5
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.4e-42 177.9 297 43.4
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.8e-40 170.6 190 55.3
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.3e-36 157.1 266 44.4
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.4e-34 151.4 241 44.0
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 7.1e-31 139.8 546 28.9
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 3.0e-29 134.4 293 36.9
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.5e-28 131.3 525 31.2
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.8e-27 127.1 185 45.9
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 4.5e-25 120.6 135 56.3
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 8.4e-24 116.3 391 28.4
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.4e-18 99.0 98 55.1
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.2e-17 95.9 230 37.4
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.3e-16 92.4 187 36.9
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.9e-16 91.3 199 36.7
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 3.2e-15 87.8 164 39.6
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.7e-14 84.7 87 51.7
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.0e-14 83.6 108 46.3
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.3e-12 77.8 149 42.3
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 1.3e-11 75.9 489 27.0
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.3e-10 70.5 238 31.9
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.4e-09 67.8 229 34.1
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.0e-08 66.2 517 26.3


User provided reference genes

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