Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0023 Trochodendron aralioides HOM05D002401 ORTHO05D006143 3.9e-90 334.7 164 100.0
TAR636G2535 Trochodendron aralioides HOM05D002401 ORTHO05D006143 6.0e-38 161.4 87 89.7
TAR573G0004 Trochodendron aralioides HOM05D002401 ORTHO05D010686 8.6e-37 157.5 97 83.5
TAR362G0006 Trochodendron aralioides HOM05D001716 ORTHO05D004234 9.2e-31 137.5 122 62.3
TAR629G0042 Trochodendron aralioides HOM05D002401 ORTHO05D006143 2.7e-30 136.0 74 90.5
TAR628G1629 Trochodendron aralioides HOM05D002401 ORTHO05D006143 3.0e-29 132.5 78 85.9
TAR376G0282 Trochodendron aralioides HOM05D002401 ORTHO05D006143 4.9e-24 115.2 74 77.0
GSVIVG01011051001 Vitis vinifera HOM05D002401 ORTHO05D006143 9.5e-20 100.9 74 67.6
Nn7g38029 Nelumbo nucifera HOM05D002401 ORTHO05D006143 2.8e-19 99.4 81 67.9
MBI16_g31342_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 1.2e-17 94.0 78 62.8
Sopen04g033330 Solanum pennellii HOM05D002401 ORTHO05D006143 2.6e-17 92.8 75 64.0
MBI16_g45778_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 5.8e-17 91.7 88 56.8
QL04p005174 Quercus lobata HOM05D002401 ORTHO05D006143 5.8e-17 91.7 74 62.2
PGSC0003DMG400016886 Solanum tuberosum HOM05D002401 ORTHO05D006143 7.6e-17 91.3 75 62.7
Aqoxy6G00960 Aquilegia oxysepala HOM05D002401 ORTHO05D006143 1.3e-16 90.5 74 63.5
Solyc04g079750.4 Solanum lycopersicum HOM05D002401 ORTHO05D006143 2.9e-16 89.4 75 62.7
CiPaw.06G110100 Carya illinoinensis HOM05D002401 ORTHO05D006143 1.1e-15 87.4 74 60.8
Lj1A1064T34 Lonicera japonica HOM05D002401 ORTHO05D006143 1.9e-15 86.7 74 62.2
Nitab4.5_0009288g0040 Nicotiana tabacum HOM05D002401 ORTHO05D006143 2.4e-15 86.3 74 59.5
CAN.G371.115 Capsicum annuum HOM05D002401 ORTHO05D006143 3.2e-15 85.9 75 58.7
CiPaw.16G052500 Carya illinoinensis HOM05D002401 ORTHO05D006143 7.1e-15 84.7 74 60.8
Psat0s2724g0080 Pisum sativum HOM05D002401 ORTHO05D006143 7.1e-15 84.7 73 61.6
PSO700G0184 Papaver somniferum HOM05D002401 ORTHO05D006143 9.2e-15 84.3 75 57.3
COL.COLO4_26393 Corchorus olitorius HOM05D002401 ORTHO05D006143 2.1e-14 83.2 74 55.4
Rhsim08G0075100 Rhododendron simsii HOM05D002401 ORTHO05D006143 2.7e-14 82.8 78 57.7
Cfa020647 Carpinus fangiana HOM05D002401 ORTHO05D006143 3.5e-14 82.4 74 58.1
Cc07_g16250 Coffea canephora HOM05D002401 ORTHO05D006143 3.5e-14 82.4 75 57.3
Hma1.2p1_0260F.1_g104390 Hydrangea macrophylla HOM05D002401 ORTHO05D006143 3.5e-14 82.4 74 55.4
A01p07120 Brassica napus HOM05D002401 ORTHO05D006143 7.8e-14 81.3 83 55.4
Ciclev10002047m.g Citrus clementina HOM05D002401 ORTHO05D006143 7.8e-14 81.3 78 52.6
Sabra02G0103000 Salix brachista HOM05D002401 ORTHO05D006143 7.8e-14 81.3 78 56.4
EL10Ac5g11128 Beta vulgaris HOM05D002401 ORTHO05D006143 1.0e-13 80.9 80 52.5
AUR62008526 Chenopodium quinoa HOM05D002401 ORTHO05D006143 1.0e-13 80.9 83 49.4
Gohir.D05G200800 Gossypium hirsutum HOM05D002401 ORTHO05D006143 1.0e-13 80.9 84 53.6
Gorai.009G206100 Gossypium raimondii HOM05D002401 ORTHO05D006143 1.0e-13 80.9 84 53.6
Lj1g0004451 Lotus japonicus HOM05D002401 ORTHO05D006143 1.0e-13 80.9 72 55.6
RcHm_v2.0_Chr5g0074221 Rosa chinensis HOM05D002401 ORTHO05D006143 1.0e-13 80.9 72 56.9
Sc02g0006690 Simmondsia chinensis HOM05D002401 ORTHO05D006143 1.0e-13 80.9 78 53.8
Prupe.5G012900 Prunus persica HOM05D002401 ORTHO05D006143 1.3e-13 80.5 74 56.8
Actinidia15286 Actinidia chinensis HOM05D001143 ORTHO05D001457 1.7e-13 80.1 74 55.4
MSTRG.24312 Avicennia marina HOM05D002401 ORTHO05D006143 1.7e-13 80.1 84 51.2
CSS0037792 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 1.7e-13 80.1 74 58.1
CSS0045600 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 1.7e-13 80.1 74 58.1
Haze_17608 Corylus avellana HOM05D002401 ORTHO05D006143 1.7e-13 80.1 74 59.5
Gohir.A05G197900 Gossypium hirsutum HOM05D002401 ORTHO05D006143 1.7e-13 80.1 84 52.4
PSO170G6637 Papaver somniferum HOM05D002401 ORTHO05D006143 1.7e-13 80.1 74 56.8
Peaxi162Scf00280g00077 Petunia axillaris HOM05D002401 ORTHO05D006143 1.7e-13 80.1 75 58.7
TPR.G12442 Trifolium pratense HOM05D002401 ORTHO05D006143 1.7e-13 80.1 73 58.9
Atru.chr13.576 Acer truncatum HOM05D002401 ORTHO05D006143 2.3e-13 79.7 79 54.4
AUR62023962 Chenopodium quinoa HOM05D002401 ORTHO05D006143 2.3e-13 79.7 78 52.6
Thhalv10025943m.g Eutrema salsugineum HOM05D002401 ORTHO05D006143 2.3e-13 79.7 78 57.7
Manes.05G166100 Manihot esculenta HOM05D002401 ORTHO05D006143 2.3e-13 79.7 74 56.8
Nitab4.5_0000110g0070 Nicotiana tabacum HOM05D002401 ORTHO05D006143 2.3e-13 79.7 74 59.5
RcHm_v2.0_Chr6g0294461 Rosa chinensis HOM05D002401 ORTHO05D006143 2.3e-13 79.7 72 55.6
Sp1g34610 Schrenkiella parvula HOM05D002401 ORTHO05D006143 2.3e-13 79.7 87 50.6
Hund09910 Selenicereus undatus HOM05D002401 ORTHO05D006143 3.0e-13 79.3 78 51.3
FAN24G0239 Fragaria x ananassa HOM05D002401 ORTHO05D006143 3.9e-13 79.0 72 55.6
Ah.11g047790 Amaranthus hybridus HOM05D000501 ORTHO05D006143 5.1e-13 78.6 78 51.3
Rhsim06G0039300 Rhododendron simsii HOM05D002401 ORTHO05D006143 5.1e-13 78.6 75 56.0
TPR.G21549 Trifolium pratense HOM05D002401 ORTHO05D006143 6.6e-13 78.2 94 48.9
A08p18900 Brassica napus HOM05D002401 ORTHO05D006143 8.7e-13 77.8 78 53.8
Carub.0007s0947 Capsella rubella HOM05D002401 ORTHO05D006143 8.7e-13 77.8 80 53.8
Cpa.g.sc64.28 Carica papaya HOM05D002401 ORTHO05D006143 8.7e-13 77.8 88 48.9
Psat5g144200 Pisum sativum HOM05D002401 ORTHO05D006143 8.7e-13 77.8 72 59.7
AUR62031756 Chenopodium quinoa HOM05D002401 ORTHO05D006143 1.1e-12 77.4 78 51.3
vmacro21593 Vaccinium macrocarpon HOM05D002401 ORTHO05D006143 1.1e-12 77.4 74 58.1
BraA01t00664Z Brassica rapa HOM05D002401 ORTHO05D006143 1.5e-12 77.0 78 56.4
SGA_v2.0_scaffold14G07044 Striga asiatica HOM05D002401 ORTHO05D006143 1.5e-12 77.0 74 50.0
Potri.002G131000 Populus trichocarpa HOM05D002401 ORTHO05D006143 1.9e-12 76.6 78 55.1
AT1G47578 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 3.3e-12 75.9 78 52.6
FAN27G1995 Fragaria x ananassa HOM05D002401 ORTHO05D006143 3.3e-12 75.9 72 54.2
AL1G53870 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 4.3e-12 75.5 80 51.2
BcaC01g01116 Brassica carinata HOM05D002401 ORTHO05D006143 4.3e-12 75.5 78 53.8
Carub.0001s3634 Capsella rubella HOM05D002401 ORTHO05D006143 4.3e-12 75.5 78 48.7
Ca_15531_v3 Cicer arietinum L. HOM05D002401 ORTHO05D006143 4.3e-12 75.5 74 56.8
Migut.N02680 Erythranthe guttata HOM05D002401 ORTHO05D006143 4.3e-12 75.5 91 45.1
arahy.Tifrunner.gnm1.ann1.JWFJ3V Arachis hypogaea HOM05D002401 ORTHO05D006143 5.6e-12 75.1 77 58.4
Eucgr.H02545 Eucalyptus grandis HOM05D002401 ORTHO05D006143 5.6e-12 75.1 72 52.8
Lalb_Chr02g0157531 Lupinus albus HOM05D002401 ORTHO05D006143 5.6e-12 75.1 78 50.0
CANSAT56G2411 Cannabis sativa HOM05D002401 ORTHO05D006143 7.3e-12 74.7 75 50.7
CARHR037210 Cardamine hirsuta HOM05D002401 ORTHO05D006143 7.3e-12 74.7 78 50.0
AUR62021564 Chenopodium quinoa HOM05D002401 ORTHO05D006143 7.3e-12 74.7 75 52.0
CARHR238960 Cardamine hirsuta HOM05D002401 ORTHO05D006143 9.6e-12 74.3 78 52.6
FAN15G1231 Fragaria x ananassa HOM05D002401 ORTHO05D006143 9.6e-12 74.3 72 52.8
BcaNung03418 Brassica carinata HOM05D002401 ORTHO05D006143 1.2e-11 73.9 78 52.6
GSVIVG01022768001 Vitis vinifera HOM05D002401 ORTHO05D439398 1.2e-11 73.9 115 44.3
Duzib041G0147 Durio zibethinus HOM05D002401 ORTHO05D006143 1.6e-11 73.6 78 51.3
Glyma.04G034800 Glycine max HOM05D002401 ORTHO05D006143 1.6e-11 73.6 72 51.4
AT4G31050 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 2.8e-11 72.8 78 52.6
Aa31LG2G19270 Aethionema arabicum HOM05D002401 ORTHO05D006143 3.6e-11 72.4 75 48.0
arahy.Tifrunner.gnm1.ann1.LC5CIX Arachis hypogaea HOM05D002401 ORTHO05D006143 3.6e-11 72.4 77 57.1
arahy.Tifrunner.gnm1.ann1.PMC9AK Arachis hypogaea HOM05D002401 ORTHO05D006143 3.6e-11 72.4 77 57.1
Sed0016228 Sechium edule HOM05D002401 ORTHO05D006143 3.6e-11 72.4 78 50.0
Phvul.005G120000 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 4.7e-11 72.0 72 52.8
BcaB03g12674 Brassica carinata HOM05D002401 ORTHO05D006143 6.2e-11 71.6 78 50.0
MD06G1010800 Malus domestica HOM05D002401 ORTHO05D006143 6.2e-11 71.6 74 48.6
arahy.Tifrunner.gnm1.ann1.A6BGRK Arachis hypogaea HOM05D002401 ORTHO05D006143 8.1e-11 71.2 77 55.8
PGR031G0661 Punica granatum HOM05D002401 ORTHO05D006143 8.1e-11 71.2 72 52.8
AL7G21020 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 1.1e-10 70.9 84 48.8
BcaC09g51892 Brassica carinata HOM05D002401 ORTHO05D006143 1.1e-10 70.9 78 53.8
C01p07880 Brassica napus HOM05D002401 ORTHO05D006143 1.1e-10 70.9 78 53.8
BolC1t00775H Brassica oleracea HOM05D002401 ORTHO05D006143 1.1e-10 70.9 78 53.8
Glyma.18G099900 Glycine max HOM05D002401 ORTHO05D006143 1.1e-10 70.9 73 52.1
FAN20G2779 Fragaria x ananassa HOM05D002401 ORTHO05D006143 1.4e-10 70.5 72 51.4
Sp7g28930 Schrenkiella parvula HOM05D002401 ORTHO05D006143 2.4e-10 69.7 67 62.7
THA.LOC104803396 Tarenaya hassleriana HOM05D002401 ORTHO05D006143 2.4e-10 69.7 75 50.7
HanXRQChr09g0268371 Helianthus annuus HOM05D002401 ORTHO05D006143 3.1e-10 69.3 81 48.1
Phvul.006G040300 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 3.1e-10 69.3 72 51.4
ATR0733G118 Amborella trichopoda HOM05D002401 ORTHO05D006143 4.0e-10 68.9 78 48.7
DCAR_019493 Daucus carota HOM05D002401 ORTHO05D006143 5.2e-10 68.6 74 51.4
Oeu015608.1 Olea europaea HOM05D002401 ORTHO05D006143 5.2e-10 68.6 75 48.0
ClCG05G022050 Citrullus lanatus HOM05D002667 ORTHO05D006143 1.2e-09 67.4 74 50.0
ECA232G3633 Erigeron canadensis HOM05D002401 ORTHO05D006143 1.2e-09 67.4 74 50.0
SalBow7G0739 Salvia bowleyana HOM05D002401 ORTHO05D006143 1.2e-09 67.4 72 54.2
Oeu019097.1 Olea europaea HOM05D002401 ORTHO05D006143 2.0e-09 66.6 75 48.0
VMungo0540G1795 Vigna mungo HOM05D002401 ORTHO05D006143 2.0e-09 66.6 72 51.4
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.6e-09 66.2 85 42.4
MELO3C012322.2 Cucumis melo HOM05D002401 ORTHO05D006143 3.4e-09 65.9 74 51.4
Dinv29831 Davidia involucrata HOM05D002401 ORTHO05D006143 3.4e-09 65.9 61 62.3
CsaV3_5G035090 Cucumis sativus L. HOM05D002401 ORTHO05D006143 4.4e-09 65.5 74 50.0
SHI04962 Sapria himalayana HOM05D002401 ORTHO05D006143 7.6e-09 64.7 71 49.3
HPP92_020226 Vanilla planifolia HOM05D002401 ORTHO05D006143 7.6e-09 64.7 76 50.0
HanXRQChr05g0141551 Helianthus annuus HOM05D002401 ORTHO05D006143 9.9e-09 64.3 86 46.5
BolC3t21140H Brassica oleracea HOM05D002401 ORTHO05D006143 1.3e-08 63.9 75 48.0
Os12g0596000 Oryza sativa ssp. japonica HOM05D002401 ORTHO05D006143 1.3e-08 63.9 74 48.6
DCAR_019427 Daucus carota HOM05D002401 ORTHO05D006143 1.7e-08 63.5 74 50.0
Zm00001eb030760 Zea mays HOM05D002401 ORTHO05D006143 3.8e-08 62.4 77 42.9
Lsat_1_v5_gn_4_122901 Lactuca sativa HOM05D002401 ORTHO05D006143 1.1e-07 60.8 79 44.3
SEGI_06323 Sequoiadendron giganteum HOM05D002401 ORTHO05D006143 3.2e-07 59.3 80 42.5
TAR625G0191 Trochodendron aralioides HOM05D008572 ORTHO05D010686 3.2e-07 59.3 78 50.0
TAR636G1348 Trochodendron aralioides HOM05D000093 ORTHO05D002784 1.2e-06 57.4 66 57.6
TAR629G2800 Trochodendron aralioides HOM05D008572 ORTHO05D010686 1.6e-06 57.0 111 42.3
Lj4g0000942 Lotus japonicus HOM05D002401 ORTHO05D006143 2.7e-06 56.2 72 40.3
Mapoly0078s0004 Marchantia polymorpha HOM05D002401 ORTHO05D006143 2.7e-06 56.2 82 39.0


User provided reference genes

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