Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 0.0e+00 1458.0 734 100.0
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 0.0e+00 1076.2 721 78.4
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 2.0e-234 816.2 872 54.0
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.3e-233 813.5 902 52.1
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 5.4e-232 808.1 726 61.8
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 1.5e-226 790.0 724 60.4
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 4.1e-203 712.2 738 56.2
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 8.2e-196 688.0 744 54.7
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.7e-193 680.2 800 52.1
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 4.1e-187 659.1 752 51.6
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 5.5e-184 648.7 764 50.9
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 5.5e-184 648.7 761 50.3
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 4.4e-181 639.0 747 51.0
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 4.1e-179 632.5 751 51.9
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 9.1e-179 631.3 768 50.3
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 3.8e-177 625.9 735 51.3
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 1.4e-171 607.4 748 48.1
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 1.8e-166 590.5 747 48.9
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.7e-161 573.9 752 47.7
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 1.1e-160 571.2 770 47.4
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 1.9e-160 570.5 769 48.4
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 2.4e-155 553.5 736 47.8
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 7.0e-155 552.0 746 47.9
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 1.7e-153 547.4 746 48.0
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 2.3e-153 547.0 736 47.7
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 3.8e-153 546.2 748 46.0
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 6.6e-153 545.4 767 46.5
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.5e-152 544.3 751 46.7
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 4.7e-151 539.3 713 48.2
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 6.1e-151 538.9 766 47.8
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 3.0e-150 536.6 767 46.5
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 1.3e-148 531.2 752 45.7
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 4.1e-147 526.2 773 45.4
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 7.0e-147 525.4 766 45.6
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 1.0e-145 521.5 822 42.9
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 1.7e-145 520.8 753 45.9
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 1.5e-144 517.7 774 43.0
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 2.8e-143 513.5 761 44.4
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 4.7e-143 512.7 753 45.2
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 9.8e-141 505.0 728 44.2
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 1.4e-139 501.1 768 44.7
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 3.2e-139 500.0 769 44.7
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 3.2e-139 500.0 752 44.0
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.3e-137 494.6 756 43.9
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 1.2e-135 488.0 747 43.0
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 4.7e-135 486.1 748 43.2
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 8.1e-135 485.3 748 43.0
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 8.9e-134 481.9 744 42.6
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 8.9e-134 481.9 750 44.4
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 1.5e-133 481.1 734 43.5
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 2.6e-133 480.3 757 43.6
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 7.5e-133 478.8 738 44.3
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 1.7e-132 477.6 757 43.6
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 3.9e-129 466.5 746 41.4
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 3.6e-127 459.9 739 42.2
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 4.0e-126 456.4 768 41.4
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 2.6e-125 453.8 761 43.4
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 4.9e-124 449.5 743 42.7
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.4e-123 448.0 766 43.1
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.9e-123 447.6 750 40.8
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 1.2e-122 444.9 764 42.3
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 4.6e-122 443.0 764 42.7
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 6.0e-122 442.6 762 42.5
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 6.2e-119 432.6 728 41.5
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 8.1e-119 432.2 744 42.9
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 5.2e-118 429.5 722 40.6
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 8.9e-118 428.7 758 39.8
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 8.4e-116 422.2 721 40.4
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 3.0e-113 413.7 758 39.1
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 5.6e-112 409.5 748 39.6
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 2.0e-109 401.0 761 38.4
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 1.2e-101 375.2 758 37.6
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.3e-95 355.1 748 36.9
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 6.9e-94 349.4 747 37.1
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 3.8e-92 343.6 758 35.5
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 1.9e-91 341.3 738 37.5
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 2.5e-91 340.9 759 36.8
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 4.2e-91 340.1 727 38.1
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 4.6e-90 336.7 755 36.8
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 5.1e-89 333.2 773 35.7
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 9.6e-88 328.9 788 35.0
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 6.3e-87 326.2 700 35.9
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.1e-86 325.5 738 35.9
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 1.1e-86 325.5 736 36.5
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 1.4e-86 325.1 787 37.0
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 4.1e-86 323.6 759 36.2
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 1.5e-85 321.6 761 35.1
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 7.6e-85 319.3 746 36.1
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 2.9e-84 317.4 746 36.3
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 2.3e-81 307.8 683 36.3
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 3.9e-81 307.0 737 34.9
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 1.1e-80 305.4 736 34.9
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 1.5e-80 305.1 762 33.5
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 4.8e-79 300.1 723 35.8
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 2.6e-77 294.3 805 34.8
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 3.4e-77 293.9 717 34.6
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 1.3e-76 292.0 737 33.9
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.2e-76 291.2 706 35.3
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.5e-75 287.7 705 34.0
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 4.2e-75 287.0 784 33.9
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 1.2e-74 285.4 779 33.9
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 1.6e-74 285.0 690 34.3
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 2.1e-74 284.6 793 33.5
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 2.1e-74 284.6 702 34.0
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 6.7e-73 279.6 786 33.5
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 2.6e-72 277.7 799 32.9
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 4.3e-72 276.9 296 57.1
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 1.5e-69 268.5 797 32.2
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 2.1e-66 258.1 852 32.3
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 7.9e-66 256.1 731 32.0
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 5.7e-64 250.0 702 31.3
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 9.7e-64 249.2 727 31.5
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 3.7e-63 247.3 721 32.9
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 5.0e-60 236.9 778 31.9
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 8.5e-60 236.1 786 31.8
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 1.5e-59 235.3 799 32.7
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 1.5e-59 235.3 799 32.7
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 4.2e-59 233.8 779 31.6
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 5.5e-59 233.4 778 31.5
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 7.2e-59 233.0 561 36.4
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 8.0e-58 229.6 786 31.8
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 7.5e-56 223.0 798 30.3
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 7.0e-54 216.5 795 30.8
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 7.0e-54 216.5 795 30.8
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 3.5e-53 214.2 172 65.7
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 5.0e-52 210.3 660 31.8
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 5.2e-49 200.3 765 28.9
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 2.6e-40 171.4 856 26.8
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 4.4e-40 170.6 773 29.5
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 2.9e-36 157.9 125 58.4
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 7.5e-32 143.3 771 26.2
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 1.1e-30 139.4 793 26.7
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 9.2e-22 109.8 771 23.7
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 7.8e-21 106.7 280 31.1
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 5.4e-14 84.0 95 47.4
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 2.5e-11 75.1 264 33.7
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 8.9e-09 66.6 42 73.8
Zm00001eb243360 Zea mays HOM05D019841 ORTHO05D037008 1.2e-08 66.2 154 29.9
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 6.4e-07 60.5 91 38.5


User provided reference genes

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