Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G1156 Trochodendron aralioides HOM05D004167 ORTHO05D005012 4.7e-188 661.0 322 100.0
TAR633G1670 Trochodendron aralioides HOM05D004167 ORTHO05D005012 3.7e-124 448.7 288 79.2
Dinv03048 Davidia involucrata HOM05D004167 ORTHO05D005012 3.3e-109 399.1 286 69.6
TAR623G0075 Trochodendron aralioides HOM05D004167 ORTHO05D005012 5.7e-109 398.3 288 69.1
Rhsim09G0165800 Rhododendron simsii HOM05D004167 ORTHO05D005012 1.8e-107 393.3 286 69.9
CSS0037407 Camellia sinensis var. sinensis HOM05D004167 ORTHO05D005012 4.5e-106 388.7 285 69.1
Ciclev10032053m.g Citrus clementina HOM05D004167 ORTHO05D005012 3.8e-105 385.6 286 67.8
GSVIVG01016551001 Vitis vinifera HOM05D004167 ORTHO05D005012 7.2e-104 381.3 287 69.0
CiPaw.02G183800 Carya illinoinensis HOM05D004167 ORTHO05D005012 6.1e-103 378.3 285 66.7
QL08p059807 Quercus lobata HOM05D004167 ORTHO05D005012 6.1e-103 378.3 285 67.4
Oeu064382.1 Olea europaea HOM05D004167 ORTHO05D005012 7.9e-103 377.9 286 66.1
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 1.4e-102 377.1 286 67.5
Cfa001475 Carpinus fangiana HOM05D004167 ORTHO05D005012 1.4e-102 377.1 286 67.8
TWI15G0568 Tripterygium wilfordii HOM05D004167 ORTHO05D005012 1.4e-102 377.1 288 64.6
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 1.8e-102 376.7 286 67.5
Potri.010G204000 Populus trichocarpa HOM05D004167 ORTHO05D005012 5.1e-102 375.2 285 66.0
Nn2g10367 Nelumbo nucifera HOM05D004167 ORTHO05D005012 6.7e-102 374.8 288 66.7
PGR142G3800 Punica granatum HOM05D004167 ORTHO05D005012 8.8e-102 374.4 288 63.5
Actinidia13047 Actinidia chinensis HOM05D004167 ORTHO05D005012 7.4e-101 371.3 270 68.5
Potri.008G055700 Populus trichocarpa HOM05D004167 ORTHO05D005012 9.7e-101 370.9 285 65.6
Eucgr.G02933 Eucalyptus grandis HOM05D004167 ORTHO05D005012 2.2e-100 369.8 286 62.6
Duzib106G0246 Durio zibethinus HOM05D004167 ORTHO05D005012 2.8e-100 369.4 286 64.7
Duzib114G0485 Durio zibethinus HOM05D004167 ORTHO05D005012 6.3e-100 368.2 286 64.0
Peaxi162Scf00015g01117 Petunia axillaris HOM05D004167 ORTHO05D005012 6.3e-100 368.2 286 63.3
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 1.1e-99 367.5 286 63.6
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 2.4e-99 366.3 278 65.1
CiPaw.01G287300 Carya illinoinensis HOM05D004167 ORTHO05D005012 3.1e-99 365.9 288 65.3
arahy.Tifrunner.gnm1.ann1.A8V5RI Arachis hypogaea HOM05D004167 ORTHO05D005012 7.0e-99 364.8 288 62.2
arahy.Tifrunner.gnm1.ann1.TM884Y Arachis hypogaea HOM05D004167 ORTHO05D005012 7.0e-99 364.8 288 62.2
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 9.1e-99 364.4 282 65.2
Nitab4.5_0010256g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 1.6e-98 363.6 286 62.6
Gohir.A10G218700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.0e-98 363.2 270 67.0
Manes.07G116100 Manihot esculenta HOM05D004167 ORTHO05D005012 2.0e-98 363.2 285 64.2
Thecc.10G042500 Theobroma cacao HOM05D004167 ORTHO05D005012 2.0e-98 363.2 288 62.5
Lalb_Chr10g0091651 Lupinus albus HOM05D004167 ORTHO05D005012 3.5e-98 362.5 288 62.5
Dinv26013 Davidia involucrata HOM05D004167 ORTHO05D005012 5.9e-98 361.7 268 68.3
Gohir.D10G228300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 7.7e-98 361.3 285 63.2
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 7.7e-98 361.3 276 65.2
Gorai.011G260700 Gossypium raimondii HOM05D004167 ORTHO05D005012 1.0e-97 360.9 285 63.2
Ca_07311_v3 Cicer arietinum L. HOM05D004167 ORTHO05D005012 1.3e-97 360.5 288 63.5
Sed0007402 Sechium edule HOM05D004167 ORTHO05D005012 1.3e-97 360.5 284 64.1
Prupe.2G235200 Prunus persica HOM05D004167 ORTHO05D005012 2.2e-97 359.8 286 64.0
Nn5g26919 Nelumbo nucifera HOM05D004167 ORTHO05D005012 2.9e-97 359.4 295 65.1
Lsat_1_v5_gn_9_65421 Lactuca sativa HOM05D004167 ORTHO05D005012 5.0e-97 358.6 282 64.2
CAN.G1013.26 Capsicum annuum HOM05D004167 ORTHO05D005012 6.5e-97 358.2 286 61.2
Lj1g0019937 Lotus japonicus HOM05D004167 ORTHO05D005012 6.5e-97 358.2 288 62.5
MD07G1198100 Malus domestica HOM05D004167 ORTHO05D005012 8.5e-97 357.8 283 63.3
SalBow6G7174 Salvia bowleyana HOM05D004167 ORTHO05D005012 1.1e-96 357.5 316 59.2
MSTRG.303 Avicennia marina HOM05D004167 ORTHO05D005012 1.5e-96 357.1 287 63.8
MELO3C021632.2 Cucumis melo HOM05D004167 ORTHO05D005012 1.5e-96 357.1 281 64.8
MD01G1133900 Malus domestica HOM05D004167 ORTHO05D005012 1.9e-96 356.7 285 63.2
CsaV3_5G026660 Cucumis sativus L. HOM05D004167 ORTHO05D005012 7.2e-96 354.8 281 64.4
Glyma.18G291100 Glycine max HOM05D004167 ORTHO05D005012 1.2e-95 354.0 297 60.6
Cc02_g07870 Coffea canephora HOM05D004167 ORTHO05D005012 2.1e-95 353.2 286 59.8
SGA_v2.0_scaffold108G31010 Striga asiatica HOM05D004167 ORTHO05D005012 3.6e-95 352.4 290 62.4
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 4.7e-95 352.1 286 61.2
Solyc05g054460.3 Solanum lycopersicum HOM05D004167 ORTHO05D005012 8.0e-95 351.3 286 60.8
Sopen05g032950 Solanum pennellii HOM05D004167 ORTHO05D005012 8.0e-95 351.3 286 60.8
Migut.F01510 Erythranthe guttata HOM05D004167 ORTHO05D005012 1.0e-94 350.9 284 64.1
TPR.G1356 Trifolium pratense HOM05D004167 ORTHO05D005012 1.4e-94 350.5 285 62.1
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 1.8e-94 350.1 286 61.2
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 1.8e-94 350.1 286 60.8
FAN06G2439 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.3e-94 349.7 282 63.1
THA.LOC104824275 Tarenaya hassleriana HOM05D004167 ORTHO05D005012 2.3e-94 349.7 286 62.2
EL10Ac2g04752 Beta vulgaris HOM05D004167 ORTHO05D005012 3.0e-94 349.4 306 59.5
FvH4_7g22450 Fragaria vesca HOM05D004167 ORTHO05D005012 3.0e-94 349.4 282 62.8
FAN06G3201 Fragaria x ananassa HOM05D004167 ORTHO05D005012 3.0e-94 349.4 282 62.8
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 4.0e-94 349.0 277 63.9
PGSC0003DMG400023531 Solanum tuberosum HOM05D004167 ORTHO05D005012 6.7e-94 348.2 286 60.8
Glyma.02G091700 Glycine max HOM05D004167 ORTHO05D005012 8.8e-94 347.8 296 59.8
Sc11g0007950 Simmondsia chinensis HOM05D004167 ORTHO05D005012 8.8e-94 347.8 284 60.2
Phvul.008G010800 Phaseolus vulgaris HOM05D004167 ORTHO05D005012 2.6e-93 346.3 288 60.1
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 3.3e-93 345.9 283 62.2
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 4.4e-93 345.5 286 62.2
FAN01G0242 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.2e-92 343.2 287 61.7
FAN01G1831 Fragaria x ananassa HOM05D004167 ORTHO05D005012 8.2e-92 341.3 287 61.3
ClCG07G003290 Citrullus lanatus HOM05D004167 ORTHO05D005012 1.8e-91 340.1 279 61.6
Hund13759 Selenicereus undatus HOM05D004167 ORTHO05D005012 1.8e-91 340.1 281 62.3
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.4e-91 339.7 285 62.1
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 5.3e-91 338.6 288 61.1
Cpa.g.sc1.403 Carica papaya HOM05D004167 ORTHO05D005012 7.0e-91 338.2 277 64.6
PSO210G2827 Papaver somniferum HOM05D004167 ORTHO05D005012 7.0e-91 338.2 286 60.8
PSO210G3999 Papaver somniferum HOM05D004167 ORTHO05D005012 9.1e-91 337.8 286 60.8
MBI14_g20108_MAGBIO Magnolia biondii HOM05D004167 ORTHO05D005012 1.2e-90 337.4 289 60.9
Ah.16g102290 Amaranthus hybridus HOM05D004167 ORTHO05D005012 2.7e-90 336.3 284 60.2
VMungo1383G2822 Vigna mungo HOM05D004167 ORTHO05D005012 7.7e-90 334.7 268 63.4
unitig_899.g15067 Utricularia gibba HOM05D004167 ORTHO05D005012 1.3e-89 334.0 285 61.4
FAN03G2888 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.9e-89 332.8 264 64.4
AUR62039381 Chenopodium quinoa HOM05D004167 ORTHO05D005012 5.0e-89 332.0 305 55.4
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 6.5e-89 331.6 279 62.0
MELO3C023850.2 Cucumis melo HOM05D004167 ORTHO05D005012 4.2e-88 328.9 278 61.2
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 1.2e-87 327.4 286 58.4
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 8.0e-87 324.7 287 57.8
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 1.0e-86 324.3 286 56.6
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 1.0e-86 324.3 286 57.7
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 1.0e-86 324.3 287 57.5
ECA232G2013 Erigeron canadensis HOM05D004167 ORTHO05D005012 2.3e-86 323.2 281 60.5
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 4.0e-86 322.4 286 56.6
Sabra10G0157600 Salix brachista HOM05D004167 ORTHO05D005012 5.2e-86 322.0 299 57.5
Oeu064381.1 Olea europaea HOM05D004167 ORTHO05D005012 6.8e-86 321.6 254 65.0
ATR0559G365 Amborella trichopoda HOM05D004167 ORTHO05D005012 2.0e-85 320.1 280 60.0
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 1.7e-84 317.0 287 57.8
AUR62012082 Chenopodium quinoa HOM05D004167 ORTHO05D005012 4.8e-84 315.5 283 56.9
Aa31LG5G20010 Aethionema arabicum HOM05D004167 ORTHO05D005012 1.4e-83 313.9 287 56.4
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 4.1e-83 312.4 286 56.3
Zm00001eb062720 Zea mays HOM05D004167 ORTHO05D005012 9.1e-83 311.2 286 55.6
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 1.2e-82 310.8 287 57.1
Sabra08G0040300 Salix brachista HOM05D004167 ORTHO05D005012 1.2e-82 310.8 286 56.6
BraA05t19647Z Brassica rapa HOM05D004167 ORTHO05D005012 4.5e-82 308.9 281 58.0
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 5.9e-82 308.5 287 56.8
Os03g0821800 Oryza sativa ssp. japonica HOM05D004167 ORTHO05D005012 6.5e-81 305.1 274 58.8
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 3.2e-80 302.8 311 51.8
Nitab4.5_0006489g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 2.7e-79 299.7 253 59.7
HPP92_020200 Vanilla planifolia HOM05D004167 ORTHO05D005012 8.0e-79 298.1 293 53.9
Hund16089 Selenicereus undatus HOM05D004167 ORTHO05D005012 4.4e-77 292.4 257 59.1
SEGI_18748 Sequoiadendron giganteum HOM05D004167 ORTHO05D005012 2.2e-76 290.0 260 56.2
CDE09G1012 Ceratophyllum demersum HOM05D004167 ORTHO05D005012 2.4e-75 286.6 312 50.6
ClCG09G019760 Citrullus lanatus HOM05D004167 ORTHO05D005012 1.8e-70 270.4 356 45.8
CsaV3_5G008030 Cucumis sativus L. HOM05D004167 ORTHO05D005012 1.8e-70 270.4 246 58.9
SMO367G0757 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 8.9e-70 268.1 256 52.3
Pp3c6_19470 Physcomitrium patens HOM05D004167 ORTHO05D005012 7.0e-67 258.5 265 49.1
Lj8A84T90 Lonicera japonica HOM05D004167 ORTHO05D005012 4.6e-66 255.8 286 50.3
Mapoly0005s0180 Marchantia polymorpha HOM05D004167 ORTHO05D005012 7.8e-66 255.0 260 50.8
AagrBONN_evm.TU.Sc2ySwM_344.1330 Anthoceros agrestis HOM05D004167 ORTHO05D005012 2.1e-63 246.9 265 46.8
C03p26250 Brassica napus HOM05D004167 ORTHO05D005012 2.1e-63 246.9 228 57.0
Manes.10G030400 Manihot esculenta HOM05D004167 ORTHO05D005012 3.6e-63 246.1 234 56.0
TAR381G1570 Trochodendron aralioides HOM05D004167 ORTHO05D005012 8.0e-63 245.0 212 65.1
BcaB02g09101 Brassica carinata HOM05D004167 ORTHO05D005012 1.7e-60 237.3 218 56.9
AagrBONN_evm.TU.Sc2ySwM_117.3937 Anthoceros agrestis HOM05D004167 ORTHO05D005012 2.7e-58 229.9 272 43.0
Pp3c3_37810 Physcomitrium patens HOM05D004167 ORTHO05D005012 4.6e-58 229.2 249 51.8
Actinidia13878 Actinidia chinensis HOM05D004167 ORTHO05D005012 8.6e-57 224.9 208 58.2
Psat3g163360 Pisum sativum HOM05D004167 ORTHO05D005012 3.5e-50 203.0 205 53.7
Cre16.g652850 Chlamydomonas reinhardtii HOM05D004167 ORTHO05D005012 1.3e-49 201.1 292 40.1
Gohir.A09G052700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 1.3e-49 201.1 120 78.3
CARHR134470 Cardamine hirsuta HOM05D004167 ORTHO05D005012 3.1e-46 189.9 120 73.3
vmacro10234 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 3.1e-46 189.9 263 45.2
Sed0025003 Sechium edule HOM05D004167 ORTHO05D005012 8.9e-46 188.3 201 50.2
Hma1.2p1_0683F.1_g202820 Hydrangea macrophylla HOM05D004167 ORTHO05D005012 4.4e-45 186.0 111 81.1
BcaC01g05486 Brassica carinata HOM05D004167 ORTHO05D005012 1.7e-44 184.1 120 70.8
Haze_27280 Corylus avellana HOM05D004167 ORTHO05D005012 2.1e-39 167.2 312 32.7
vmacro10235 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 5.2e-38 162.5 82 90.2
BcaC01g05485 Brassica carinata HOM05D004167 ORTHO05D005012 4.4e-37 159.5 111 64.9
SMO142G0075 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 5.8e-37 159.1 239 38.1
CARHR134480 Cardamine hirsuta HOM05D004167 ORTHO05D005012 4.9e-36 156.0 130 57.7
AUR62014580 Chenopodium quinoa HOM05D004167 ORTHO05D005012 4.9e-36 156.0 82 84.1
EL10Ac8g19589 Beta vulgaris HOM05D004167 ORTHO05D005012 1.2e-34 151.4 214 43.9
PSO079G0067 Papaver somniferum HOM05D004167 ORTHO05D005012 2.7e-34 150.2 192 45.8
BraA02t07167Z Brassica rapa HOM05D004167 ORTHO05D005012 5.6e-32 142.5 97 69.1
MSTRG.8242 Avicennia marina HOM05D004167 ORTHO05D005012 4.5e-29 132.9 74 82.4
PRCOL_00006983 Prasinoderma coloniale HOM05D004167 ORTHO05D005012 2.2e-28 130.6 262 33.2
SMO142G0035 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 1.4e-27 127.9 223 34.1
EL10Ac2g03543 Beta vulgaris HOM05D004167 ORTHO05D005012 9.3e-27 125.2 191 41.9
CBR_g12000 Chara braunii HOM05D004167 ORTHO05D005012 4.6e-26 122.9 85 62.4
Cfa024819 Carpinus fangiana HOM05D004167 ORTHO05D005012 1.0e-25 121.7 256 29.7
SHI22567 Sapria himalayana HOM05D004167 ORTHO05D005012 1.1e-22 111.7 70 75.7
SalBow3G2867 Salvia bowleyana HOM05D037314 ORTHO05D005012 1.0e-09 68.6 36 86.1
SalBow3G3756 Salvia bowleyana HOM05D004167 ORTHO05D005012 1.8e-09 67.8 36 83.3
SalBow5G0433 Salvia bowleyana HOM05D004167 ORTHO05D005012 6.7e-09 65.9 35 82.9
SalBow8G3469 Salvia bowleyana HOM05D004167 ORTHO05D005012 8.7e-09 65.5 36 80.6
Nitab4.5_0000065g0050 Nicotiana tabacum HOM05D004167 ORTHO05D005012 2.1e-07 60.8 35 77.1
Nitab4.5_0000065g0040 Nicotiana tabacum HOM05D004167 ORTHO05D005012 8.2e-07 58.9 60 48.3
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 1.1e-06 58.5 220 24.1
SHI22568 Sapria himalayana HOM05D004167 ORTHO05D005012 1.1e-06 58.5 47 57.4
TAR629G0953 Trochodendron aralioides HOM05D004167 ORTHO05D416102 1.4e-06 58.2 36 75.0
arahy.Tifrunner.gnm1.ann1.I9KCKB Arachis hypogaea HOM05D001644 ORTHO05D001641 5.3e-06 56.2 28 85.7
SHI22565 Sapria himalayana HOM05D004167 ORTHO05D005012 9.0e-06 55.5 56 57.1


User provided reference genes

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