Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G1115 Trochodendron aralioides HOM05D000599 ORTHO05D000554 1.4e-147 526.2 258 100.0
TAR625G0992 Trochodendron aralioides HOM05D000599 ORTHO05D000554 3.7e-50 202.6 133 85.0
TAR622G0928 Trochodendron aralioides HOM05D000599 ORTHO05D000554 1.4e-49 200.7 133 84.2
TAR375G1138 Trochodendron aralioides HOM05D000599 ORTHO05D000554 1.8e-49 200.3 133 84.2
TAR624G0191 Trochodendron aralioides HOM05D003142 ORTHO05D003600 1.4e-46 190.7 141 66.0
TAR622G0650 Trochodendron aralioides HOM05D000599 ORTHO05D000554 6.5e-39 165.2 151 67.5
Nn3g16877 Nelumbo nucifera HOM05D000599 ORTHO05D000554 2.4e-25 120.2 154 53.9
Aqoxy3G01026 Aquilegia oxysepala HOM05D000599 ORTHO05D000554 1.6e-24 117.5 154 52.6
QL03p060248 Quercus lobata HOM05D000599 ORTHO05D000554 1.8e-20 104.0 142 49.3
Cfa009147 Carpinus fangiana HOM05D000599 ORTHO05D000554 3.3e-19 99.8 89 64.0
Hma1.2p1_0536F.1_g174030 Hydrangea macrophylla HOM05D000599 ORTHO05D000554 9.7e-19 98.2 91 62.6
Haze_12181 Corylus avellana HOM05D000599 ORTHO05D000554 1.7e-18 97.4 151 49.0
TWI36G0971 Tripterygium wilfordii HOM05D000599 ORTHO05D000554 2.2e-18 97.1 91 62.6
ClCG05G025320 Citrullus lanatus HOM05D000599 ORTHO05D000554 2.8e-18 96.7 141 50.4
CsaV3_5G031580 Cucumis sativus L. HOM05D000599 ORTHO05D000554 3.7e-18 96.3 138 47.8
MELO3C011998.2 Cucumis melo HOM05D000599 ORTHO05D000554 6.3e-18 95.5 141 48.2
Manes.13G030100 Manihot esculenta HOM05D000599 ORTHO05D000554 6.3e-18 95.5 135 48.9
CiPaw.06G071900 Carya illinoinensis HOM05D000599 ORTHO05D000554 1.8e-17 94.0 141 49.6
Duzib268G0658 Durio zibethinus HOM05D000599 ORTHO05D000554 2.4e-17 93.6 90 60.0
Dinv15291 Davidia involucrata HOM05D000599 ORTHO05D000554 4.1e-17 92.8 88 63.6
COL.COLO4_24170 Corchorus olitorius HOM05D000599 ORTHO05D000554 5.3e-17 92.4 138 47.1
vmacro01178 Vaccinium macrocarpon HOM05D000599 ORTHO05D000554 9.1e-17 91.7 145 45.5
Lj6A806G48 Lonicera japonica HOM05D000599 ORTHO05D000554 2.0e-16 90.5 88 58.0
Duzib251G0866 Durio zibethinus HOM05D000599 ORTHO05D000554 2.7e-16 90.1 90 58.9
Prupe.1G253500 Prunus persica HOM05D000599 ORTHO05D000554 2.7e-16 90.1 112 48.2
Eucgr.H02605 Eucalyptus grandis HOM05D000599 ORTHO05D000554 3.5e-16 89.7 153 47.1
MD16G1092800 Malus domestica HOM05D000599 ORTHO05D000554 3.5e-16 89.7 141 44.0
Cc11_g14730 Coffea canephora HOM05D000599 ORTHO05D000554 7.7e-16 88.6 150 48.0
Rhsim12G0046400 Rhododendron simsii HOM05D000599 ORTHO05D000554 7.7e-16 88.6 89 56.2
Thecc.02G250200 Theobroma cacao HOM05D000599 ORTHO05D000554 1.3e-15 87.8 141 47.5
Nitab4.5_0000203g0130 Nicotiana tabacum HOM05D000599 ORTHO05D000554 2.2e-15 87.0 148 48.6
Ca_05322_v3 Cicer arietinum L. HOM05D000599 ORTHO05D000554 5.0e-15 85.9 138 43.5
PSO017G5724 Papaver somniferum HOM05D000599 ORTHO05D000554 5.0e-15 85.9 149 45.0
CSS0039217 Camellia sinensis var. sinensis HOM05D000599 ORTHO05D000554 8.5e-15 85.1 153 43.8
Nitab4.5_0008803g0020 Nicotiana tabacum HOM05D000599 ORTHO05D000554 1.1e-14 84.7 148 47.3
MD13G1092200 Malus domestica HOM05D000599 ORTHO05D000554 1.5e-14 84.3 144 43.8
CAN.G507.5 Capsicum annuum HOM05D000599 ORTHO05D000554 1.9e-14 84.0 147 46.3
Thhalv10007901m.g Eutrema salsugineum HOM05D000599 ORTHO05D000554 1.9e-14 84.0 125 40.8
FAN07G0608 Fragaria x ananassa HOM05D000599 ORTHO05D000554 1.9e-14 84.0 152 42.8
Lj4g0025261 Lotus japonicus HOM05D000599 ORTHO05D000554 1.9e-14 84.0 142 47.2
Atru.chr11.2032 Acer truncatum HOM05D000599 ORTHO05D000554 2.5e-14 83.6 89 55.1
Psat4g123800 Pisum sativum HOM05D000599 ORTHO05D000554 3.2e-14 83.2 91 52.7
FAN17G0773 Fragaria x ananassa HOM05D000599 ORTHO05D000554 4.2e-14 82.8 145 44.8
Medtr8g064610 Medicago truncatula HOM05D000599 ORTHO05D000554 4.2e-14 82.8 144 43.8
Peaxi162Scf00338g00419 Petunia axillaris HOM05D000599 ORTHO05D000554 4.2e-14 82.8 154 45.5
FvH4_4g34500 Fragaria vesca HOM05D000599 ORTHO05D000554 7.2e-14 82.0 125 46.4
FAN22G0370 Fragaria x ananassa HOM05D000599 ORTHO05D000554 7.2e-14 82.0 152 42.1
EL10Ac6g13676 Beta vulgaris HOM05D000599 ORTHO05D000554 9.4e-14 81.6 153 43.1
A09p41050 Brassica napus HOM05D000599 ORTHO05D000554 9.4e-14 81.6 89 50.6
CANSAT01G2196 Cannabis sativa HOM05D000599 ORTHO05D000554 9.4e-14 81.6 93 53.8
Cpa.g.sc69.44 Carica papaya HOM05D000599 ORTHO05D000554 9.4e-14 81.6 119 46.2
PSO478G1399 Papaver somniferum HOM05D000599 ORTHO05D000554 9.4e-14 81.6 111 50.5
PGR119G0609 Punica granatum HOM05D000599 ORTHO05D000554 9.4e-14 81.6 125 44.0
Solyc05g005480.2 Solanum lycopersicum HOM05D000599 ORTHO05D000554 9.4e-14 81.6 156 45.5
VMungo0251G2961 Vigna mungo HOM05D000599 ORTHO05D000554 9.4e-14 81.6 144 45.1
Phvul.003G060300 Phaseolus vulgaris HOM05D000599 ORTHO05D000554 1.2e-13 81.3 129 45.7
FAN12G4022 Fragaria x ananassa HOM05D000599 ORTHO05D000554 1.6e-13 80.9 125 45.6
SGA_v2.0_scaffold165G38236 Striga asiatica HOM05D000693 ORTHO05D002444 2.1e-13 80.5 153 41.2
AL1G37490 Arabidopsis lyrata HOM05D000599 ORTHO05D000554 2.7e-13 80.1 113 44.2
Aa31LG7G7630 Aethionema arabicum HOM05D000599 ORTHO05D000554 3.6e-13 79.7 88 50.0
MSTRG.7901 Avicennia marina HOM05D000599 ORTHO05D000554 3.6e-13 79.7 123 44.7
Sp1g21140 Schrenkiella parvula HOM05D000599 ORTHO05D000554 3.6e-13 79.7 144 42.4
PGSC0003DMG400030998 Solanum tuberosum HOM05D000599 ORTHO05D000554 3.6e-13 79.7 148 45.9
THA.LOC104807125 Tarenaya hassleriana HOM05D000599 ORTHO05D000554 3.6e-13 79.7 95 48.4
THA.LOC104808981 Tarenaya hassleriana HOM05D000599 ORTHO05D000554 3.6e-13 79.7 95 48.4
arahy.Tifrunner.gnm1.ann1.THHQ0A Arachis hypogaea HOM05D000599 ORTHO05D000554 4.7e-13 79.3 120 45.8
Carub.0001s2325 Capsella rubella HOM05D000599 ORTHO05D000554 4.7e-13 79.3 115 40.9
Gohir.A03G139500 Gossypium hirsutum HOM05D000599 ORTHO05D000554 4.7e-13 79.3 138 46.4
Sopen05g001500 Solanum pennellii HOM05D000599 ORTHO05D000554 4.7e-13 79.3 156 44.9
BraA09t39598Z Brassica rapa HOM05D000599 ORTHO05D000554 6.1e-13 79.0 89 50.6
Glyma.18G138300 Glycine max HOM05D000599 ORTHO05D000554 6.1e-13 79.0 101 52.5
RcHm_v2.0_Chr4g0443881 Rosa chinensis HOM05D000599 ORTHO05D000554 6.1e-13 79.0 152 40.8
Ciclev10032327m.g Citrus clementina HOM05D000599 ORTHO05D000554 8.0e-13 78.6 80 57.5
Potri.016G136100 Populus trichocarpa HOM05D000599 ORTHO05D000554 8.0e-13 78.6 89 56.2
AT1G23740 Arabidopsis thaliana HOM05D000599 ORTHO05D000554 1.0e-12 78.2 145 39.3
AUR62005383 Chenopodium quinoa HOM05D000599 ORTHO05D000554 1.0e-12 78.2 148 45.3
Gohir.D02G162400 Gossypium hirsutum HOM05D000599 ORTHO05D000554 1.0e-12 78.2 138 45.7
arahy.Tifrunner.gnm1.ann1.KU7HBQ Arachis hypogaea HOM05D000599 ORTHO05D000554 1.4e-12 77.8 120 47.5
C05p22950 Brassica napus HOM05D000599 ORTHO05D000554 1.4e-12 77.8 89 49.4
Glyma.08G286800 Glycine max HOM05D000599 ORTHO05D000554 1.4e-12 77.8 150 44.7
BcaC05g26278 Brassica carinata HOM05D000599 ORTHO05D000554 1.8e-12 77.4 89 49.4
BolC5t30994H Brassica oleracea HOM05D000599 ORTHO05D000554 1.8e-12 77.4 89 49.4
QL05p003308 Quercus lobata HOM05D003142 ORTHO05D003600 2.3e-12 77.0 87 47.1
Gorai.005G182400 Gossypium raimondii HOM05D000599 ORTHO05D000554 4.0e-12 76.3 138 45.7
CARHR024140 Cardamine hirsuta HOM05D000599 ORTHO05D000554 5.2e-12 75.9 139 40.3
Sabra04G0153000 Salix brachista HOM05D000599 ORTHO05D000554 5.2e-12 75.9 123 47.2
Sed0025855 Sechium edule HOM05D000599 ORTHO05D000554 8.8e-12 75.1 146 41.1
CiPaw.01G215300 Carya illinoinensis HOM05D003142 ORTHO05D003600 2.0e-11 73.9 124 33.9
AUR62014045 Chenopodium quinoa HOM05D000599 ORTHO05D000554 3.4e-11 73.2 89 50.6
HanXRQChr15g0479701 Helianthus annuus HOM05D000599 ORTHO05D000554 3.4e-11 73.2 139 40.3
TPR.G11658 Trifolium pratense HOM05D000599 ORTHO05D000554 3.4e-11 73.2 128 40.6
Duzib235G1234 Durio zibethinus HOM05D003142 ORTHO05D003600 4.4e-11 72.8 129 36.4
Migut.L01418 Erythranthe guttata HOM05D000599 ORTHO05D000554 5.7e-11 72.4 90 52.2
Lsat_1_v5_gn_3_48340 Lactuca sativa HOM05D000599 ORTHO05D000554 9.8e-11 71.6 147 38.1
Thecc.06G125300 Theobroma cacao HOM05D003142 ORTHO05D003600 1.3e-10 71.2 119 35.3
Hund25352 Selenicereus undatus HOM05D000599 ORTHO05D000554 2.8e-10 70.1 127 44.1
ECA246G4133 Erigeron canadensis HOM05D000599 ORTHO05D000554 1.4e-09 67.8 90 45.6
Atru.chr11.2436 Acer truncatum HOM05D000599 ORTHO05D000554 2.4e-09 67.0 65 56.9
Lj3g0012768 Lotus japonicus HOM05D003142 ORTHO05D003600 3.1e-09 66.6 54 48.1
Nn6g35659 Nelumbo nucifera HOM05D003142 ORTHO05D003600 4.1e-09 66.2 97 37.1
GSVIVG01013734001 Vitis vinifera HOM05D000599 ORTHO05D000554 4.1e-09 66.2 65 58.5
GSVIVG01016711001 Vitis vinifera HOM05D003142 ORTHO05D003600 4.1e-09 66.2 92 38.0
Ah.02g129940 Amaranthus hybridus HOM05D000599 ORTHO05D000554 9.1e-09 65.1 54 57.4
Gohir.D10G058200 Gossypium hirsutum HOM05D003142 ORTHO05D003600 1.2e-08 64.7 94 37.2
SalBow2G3571 Salvia bowleyana HOM05D000693 ORTHO05D000554 1.2e-08 64.7 89 43.8
unitig_26.g10359 Utricularia gibba HOM05D000599 ORTHO05D000554 1.2e-08 64.7 148 39.9
vmacro15059 Vaccinium macrocarpon HOM05D003142 ORTHO05D003600 1.2e-08 64.7 58 53.4
Lalb_Chr16g0392401 Lupinus albus HOM05D000599 ORTHO05D000554 1.6e-08 64.3 74 48.6
Manes.11G016000 Manihot esculenta HOM05D003142 ORTHO05D003600 2.0e-08 63.9 101 39.6
Cfa003505 Carpinus fangiana HOM05D000945 ORTHO05D003600 2.7e-08 63.5 127 37.8
ClCG09G001160 Citrullus lanatus HOM05D003142 ORTHO05D003600 2.7e-08 63.5 126 31.0
CDE05G3689 Ceratophyllum demersum HOM05D000599 ORTHO05D000554 3.5e-08 63.2 65 52.3
PSO104G0224 Papaver somniferum HOM05D003142 ORTHO05D003600 3.5e-08 63.2 122 32.0
Potri.008G161600 Populus trichocarpa HOM05D000599 ORTHO05D000554 4.5e-08 62.8 48 64.6
DCAR_026540 Daucus carota HOM05D000599 ORTHO05D000554 5.9e-08 62.4 65 55.4
Glyma.07G042250 Glycine max HOM05D003142 ORTHO05D003600 5.9e-08 62.4 121 34.7
ATR0730G112 Amborella trichopoda HOM05D000599 ORTHO05D000554 7.7e-08 62.0 146 34.9
HPP92_024317 Vanilla planifolia HOM05D000599 ORTHO05D000554 7.7e-08 62.0 139 38.1
CDE11G0812 Ceratophyllum demersum HOM05D000599 ORTHO05D000554 1.3e-07 61.2 65 50.8
Oeu001740.1 Olea europaea HOM05D000599 ORTHO05D000554 1.3e-07 61.2 47 57.4
VMungo0331G1342 Vigna mungo HOM05D003142 ORTHO05D003600 1.7e-07 60.8 52 50.0
Ciclev10025568m.g Citrus clementina HOM05D003142 ORTHO05D003600 2.2e-07 60.5 50 52.0
Aqoxy7G00984 Aquilegia oxysepala HOM05D003142 ORTHO05D003600 2.9e-07 60.1 73 50.7
Ciclev10027460m.g Citrus clementina HOM05D003142 ORTHO05D003600 3.8e-07 59.7 50 50.0
Sabra03G0041000 Salix brachista HOM05D003142 ORTHO05D003600 3.8e-07 59.7 129 36.4
Glyma.16G010500 Glycine max HOM05D003142 ORTHO05D003600 5.0e-07 59.3 51 51.0
Potri.003G069700 Populus trichocarpa HOM05D003142 ORTHO05D003600 5.0e-07 59.3 50 56.0
Dinv20407 Davidia involucrata HOM05D003142 ORTHO05D003600 8.5e-07 58.5 32 68.8
Actinidia21804 Actinidia chinensis HOM05D003142 ORTHO05D003600 1.5e-06 57.8 57 52.6
Cfa007425 Carpinus fangiana HOM05D000599 ORTHO05D000554 1.5e-06 57.8 74 50.0
Haze_14671 Corylus avellana HOM05D000599 ORTHO05D000554 1.5e-06 57.8 49 59.2
MD09G1177700 Malus domestica HOM05D003142 ORTHO05D003600 1.5e-06 57.8 125 32.0
RcHm_v2.0_Chr2g0146551 Rosa chinensis HOM05D003142 ORTHO05D003600 1.9e-06 57.4 110 31.8
TWI23G0931 Tripterygium wilfordii HOM05D003142 ORTHO05D003600 1.9e-06 57.4 64 45.3
Eucgr.F02474 Eucalyptus grandis HOM05D003142 ORTHO05D003600 2.5e-06 57.0 134 30.6
Lalb_Chr03g0041291 Lupinus albus HOM05D003142 ORTHO05D003600 2.5e-06 57.0 66 42.4
Oeu056399.1 Olea europaea HOM05D000599 ORTHO05D000554 2.5e-06 57.0 65 49.2
CSS0002964 Camellia sinensis var. sinensis HOM05D003142 ORTHO05D003600 3.2e-06 56.6 55 50.9
CSS0037213 Camellia sinensis var. sinensis HOM05D003142 ORTHO05D003600 3.2e-06 56.6 55 50.9
Cfa007426 Carpinus fangiana HOM05D000599 ORTHO05D000554 3.2e-06 56.6 63 50.8
CiPaw.03G038200 Carya illinoinensis HOM05D000599 ORTHO05D000554 4.2e-06 56.2 74 47.3
Gohir.A09G026300 Gossypium hirsutum HOM05D000599 ORTHO05D000554 4.2e-06 56.2 45 64.4
Gohir.D09G025700 Gossypium hirsutum HOM05D000599 ORTHO05D000554 4.2e-06 56.2 45 64.4
Gorai.006G030000 Gossypium raimondii HOM05D000599 ORTHO05D000554 4.2e-06 56.2 45 64.4
Sc11g0001160 Simmondsia chinensis HOM05D000599 ORTHO05D000554 4.2e-06 56.2 121 38.0
MSTRG.2397 Avicennia marina HOM05D000599 ORTHO05D000554 5.5e-06 55.8 65 52.3
Cfa007427 Carpinus fangiana HOM05D000599 ORTHO05D000554 5.5e-06 55.8 53 54.7
Ciclev10025604m.g Citrus clementina HOM05D003142 ORTHO05D003600 5.5e-06 55.8 50 50.0
Rhsim08G0241500 Rhododendron simsii HOM05D003142 ORTHO05D003600 5.5e-06 55.8 59 49.2
Haze_14670 Corylus avellana HOM05D000599 ORTHO05D000554 7.2e-06 55.5 59 54.2
MD09G1034000 Malus domestica HOM05D000599 ORTHO05D000554 7.2e-06 55.5 55 54.5
Oeu056400.1 Olea europaea HOM05D000599 ORTHO05D000554 7.2e-06 55.5 35 65.7
Phvul.004G014200 Phaseolus vulgaris HOM05D000599 ORTHO05D000554 7.2e-06 55.5 45 55.6
PGR049G0005 Punica granatum HOM05D003142 ORTHO05D003600 7.2e-06 55.5 46 52.2
PGR119G0325 Punica granatum HOM05D003142 ORTHO05D003600 7.2e-06 55.5 46 52.2
Sc15g0000640 Simmondsia chinensis HOM05D003142 ORTHO05D003600 7.2e-06 55.5 49 51.0
Cc07_g20020 Coffea canephora HOM05D000599 ORTHO05D000554 9.4e-06 55.1 70 51.4
MD09G1033200 Malus domestica HOM05D000599 ORTHO05D000554 9.4e-06 55.1 55 54.5
Manes.17G121000 Manihot esculenta HOM05D000599 ORTHO05D000554 9.4e-06 55.1 40 67.5


User provided reference genes

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