Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G1016 Trochodendron aralioides HOM05D007489 ORTHO05D008037 0.0e+00 1558.9 850 100.0
Nn1g09012 Nelumbo nucifera HOM05D007489 ORTHO05D008037 9.5e-172 608.2 801 48.1
Aqoxy5G02160 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 4.6e-142 509.6 818 43.4
CSS0034374 Camellia sinensis var. sinensis HOM05D007489 ORTHO05D008037 5.6e-140 502.7 861 41.8
Dinv40650 Davidia involucrata HOM05D007489 ORTHO05D008037 2.4e-138 497.3 814 42.0
Hma1.2p1_0155F.1_g068400 Hydrangea macrophylla HOM05D007489 ORTHO05D008037 4.3e-124 449.9 841 40.8
Prupe.4G057700 Prunus persica HOM05D007489 ORTHO05D008037 5.5e-111 406.4 804 40.5
Rhsim02G0140400 Rhododendron simsii HOM05D007489 ORTHO05D008037 7.4e-108 396.0 908 36.6
PSO063G1126 Papaver somniferum HOM05D007489 ORTHO05D008037 9.7e-108 395.6 935 36.7
Duzib235G0638 Durio zibethinus HOM05D007489 ORTHO05D008037 5.9e-105 386.3 878 37.4
Haze_06275 Corylus avellana HOM05D007489 ORTHO05D008037 1.0e-104 385.6 884 37.2
MD10G1283800 Malus domestica HOM05D007489 ORTHO05D008037 1.7e-104 384.8 841 38.0
Lj1A1196T41 Lonicera japonica HOM05D007489 ORTHO05D008037 1.9e-103 381.3 795 36.0
MBI06_g31402_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 7.2e-103 379.4 569 44.1
Sabra11G0045300 Salix brachista HOM05D007489 ORTHO05D008037 3.3e-100 370.5 877 36.3
Duzib192G0524 Durio zibethinus HOM05D007489 ORTHO05D008037 4.4e-100 370.2 852 36.5
Potri.011G063500 Populus trichocarpa HOM05D007489 ORTHO05D008037 3.5e-97 360.5 815 37.2
Manes.16G035700 Manihot esculenta HOM05D007489 ORTHO05D008037 8.5e-96 355.9 968 33.6
Thecc.06G175600 Theobroma cacao HOM05D007489 ORTHO05D008037 1.1e-95 355.5 840 35.2
RcHm_v2.0_Chr7g0215591 Rosa chinensis HOM05D007489 ORTHO05D008037 7.2e-95 352.8 861 36.6
RcHm_v2.0_Chr7g0216741 Rosa chinensis HOM05D007489 ORTHO05D008037 5.2e-93 346.7 826 36.8
Gohir.D10G031400 Gossypium hirsutum HOM05D007489 ORTHO05D008037 1.0e-88 332.4 849 33.7
FAN08G0692 Fragaria x ananassa HOM05D007489 ORTHO05D008037 8.6e-88 329.3 881 34.5
FvH4_5g26040 Fragaria vesca HOM05D007489 ORTHO05D008037 6.1e-86 323.2 861 35.1
FAN04G2784 Fragaria x ananassa HOM05D007489 ORTHO05D008037 4.0e-85 320.5 902 33.4
FAN18G0613 Fragaria x ananassa HOM05D007489 ORTHO05D008037 5.0e-80 303.5 881 33.7
PGR004G0633 Punica granatum HOM05D007489 ORTHO05D008037 3.0e-77 294.3 818 32.5
CiPaw.10G057000 Carya illinoinensis HOM05D007489 ORTHO05D008037 8.9e-77 292.7 411 46.5
Gorai.011G033000 Gossypium raimondii HOM05D007489 ORTHO05D008037 1.5e-76 292.0 850 31.9
Lsat_1_v5_gn_4_50401 Lactuca sativa HOM05D007489 ORTHO05D008037 3.4e-76 290.8 851 32.4
TPR.G16271 Trifolium pratense HOM05D007489 ORTHO05D008037 5.7e-76 290.0 870 32.3
Glyma.07G204500 Glycine max HOM05D007489 ORTHO05D008037 7.5e-76 289.7 855 32.4
ClCG01G023550 Citrullus lanatus HOM05D007489 ORTHO05D008037 4.9e-75 287.0 816 33.6
Medtr4g087875 Medicago truncatula HOM05D007489 ORTHO05D008037 9.2e-74 282.7 854 32.6
MELO3C007230.2 Cucumis melo HOM05D007489 ORTHO05D008037 2.7e-73 281.2 811 33.2
ECA234G3308 Erigeron canadensis HOM05D007489 ORTHO05D008037 4.6e-73 280.4 861 32.6
Sc05g0007220 Simmondsia chinensis HOM05D007489 ORTHO05D008037 5.0e-72 276.9 876 31.3
Gohir.A10G030500 Gossypium hirsutum HOM05D007489 ORTHO05D008037 1.6e-70 271.9 812 31.3
arahy.Tifrunner.gnm1.ann1.S0ULK2 Arachis hypogaea HOM05D007489 ORTHO05D008037 7.5e-68 263.1 831 31.4
Lj4g0021888 Lotus japonicus HOM05D007489 ORTHO05D008037 1.3e-67 262.3 833 32.2
Ca_26049_v3 Cicer arietinum L. HOM05D007489 ORTHO05D008037 2.7e-65 254.6 803 31.5
HanXRQChr11g0327141 Helianthus annuus HOM05D007489 ORTHO05D008037 2.7e-65 254.6 847 31.6
Phvul.003G057800 Phaseolus vulgaris HOM05D007489 ORTHO05D008037 6.0e-65 253.4 869 29.5
CAN.G79.55 Capsicum annuum HOM05D007489 ORTHO05D008037 8.6e-64 249.6 859 32.2
PSO782G2467 Papaver somniferum HOM05D007489 ORTHO05D008037 1.1e-63 249.2 786 32.3
CANSAT54G0123 Cannabis sativa HOM05D007489 ORTHO05D008037 2.1e-62 245.0 860 30.5
Atru.chr10.1727 Acer truncatum HOM05D007489 ORTHO05D008037 6.2e-62 243.4 832 28.8
FAN13G1982 Fragaria x ananassa HOM05D007489 ORTHO05D008037 8.9e-61 239.6 926 29.6
Sed0003654 Sechium edule HOM05D007489 ORTHO05D008037 5.4e-58 230.3 821 30.2
Oeu041109.2 Olea europaea HOM05D007489 ORTHO05D008037 3.5e-57 227.6 923 29.4
GSVIVG01021171001 Vitis vinifera HOM05D007489 ORTHO05D008037 6.0e-57 226.9 360 44.2
Sopen02g022090 Solanum pennellii HOM05D007489 ORTHO05D008037 7.8e-57 226.5 900 29.3
arahy.Tifrunner.gnm1.ann1.X1E7Z2 Arachis hypogaea HOM05D007489 ORTHO05D008037 4.3e-55 220.7 820 29.6
COL.COLO4_31347 Corchorus olitorius HOM05D007489 ORTHO05D008037 7.3e-55 219.9 931 28.4
AUR62036546 Chenopodium quinoa HOM05D007489 ORTHO05D008037 1.5e-52 212.2 845 28.4
Nitab4.5_0001928g0060 Nicotiana tabacum HOM05D007489 ORTHO05D008037 3.2e-50 204.5 873 28.3
EL10Ac8g20488 Beta vulgaris HOM05D007489 ORTHO05D008037 7.1e-50 203.4 898 27.5
CsaV3_6G050690 Cucumis sativus L. HOM05D007489 ORTHO05D008037 1.6e-49 202.2 909 27.8
Thhalv10024499m.g Eutrema salsugineum HOM05D010718 ORTHO05D008037 6.0e-49 200.3 816 28.2
Sp7g15530 Schrenkiella parvula HOM05D010718 ORTHO05D008037 1.0e-48 199.5 865 27.2
AT4G18490 Arabidopsis thaliana HOM05D010718 ORTHO05D008037 1.3e-48 199.1 848 28.9
Migut.J01535 Erythranthe guttata HOM05D007489 ORTHO05D008037 1.7e-48 198.7 758 28.6
AL7G35790 Arabidopsis lyrata HOM05D010718 ORTHO05D008037 2.3e-48 198.4 829 29.1
QL05p044409 Quercus lobata HOM05D007489 ORTHO05D008037 3.6e-46 191.0 273 48.0
DCAR_004024 Daucus carota HOM05D007489 ORTHO05D008037 1.4e-45 189.1 304 40.5
Aa31LG6G1240 Aethionema arabicum HOM05D010718 ORTHO05D008037 9.0e-45 186.4 831 29.8
CARHR225330 Cardamine hirsuta HOM05D010718 ORTHO05D008037 9.0e-45 186.4 825 27.6
A03p51330 Brassica napus HOM05D010718 ORTHO05D008037 1.7e-43 182.2 854 27.8
ATR0602G208 Amborella trichopoda HOM05D007489 ORTHO05D008037 4.9e-43 180.6 773 28.8
Lalb_Chr16g0384211 Lupinus albus HOM05D007489 ORTHO05D008037 8.4e-43 179.9 514 32.7
BcaC06g30581 Brassica carinata HOM05D010718 ORTHO05D008037 1.1e-42 179.5 833 28.3
Carub.0007s2274 Capsella rubella HOM05D010718 ORTHO05D008037 1.2e-41 176.0 831 27.0
Os01g0755100 Oryza sativa ssp. japonica HOM05D007489 ORTHO05D008037 1.9e-39 168.7 836 27.2
BraA03t14214Z Brassica rapa HOM05D010718 ORTHO05D008037 4.3e-39 167.5 835 27.7
BcaNung02709 Brassica carinata HOM05D010718 ORTHO05D008037 1.4e-37 162.5 822 27.0
C07p49740 Brassica napus HOM05D010718 ORTHO05D008037 6.4e-35 153.7 828 26.0
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 6.4e-35 153.7 872 26.0
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 8.4e-35 153.3 907 24.8
MBI06_g31401_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 1.4e-34 152.5 106 71.7
BolC7t45475H Brassica oleracea HOM05D010718 ORTHO05D008037 1.9e-34 152.1 830 26.0
SalBow6G6000 Salvia bowleyana HOM05D007489 ORTHO05D008037 7.1e-34 150.2 894 26.5
CDE08G0488 Ceratophyllum demersum HOM05D049506 ORTHO05D043857 4.6e-33 147.5 775 26.5
VMungo0251G2273 Vigna mungo HOM05D007489 ORTHO05D008037 4.6e-33 147.5 596 28.5
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 7.9e-33 146.7 881 25.8
SalBow6G3268 Salvia bowleyana HOM05D007489 ORTHO05D008037 1.8e-32 145.6 897 26.3
PGR004G2208 Punica granatum HOM05D007489 ORTHO05D008037 4.8e-30 137.5 126 59.5
Hund23951 Selenicereus undatus HOM05D007489 ORTHO05D008037 1.2e-28 132.9 202 41.1
Zm00001eb152860 Zea mays HOM05D007489 ORTHO05D008037 5.8e-28 130.6 806 26.7
Cpa.g.sc7.37 Carica papaya HOM05D007489 ORTHO05D008037 3.8e-27 127.9 400 32.5
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 1.6e-25 122.5 890 25.5
MD05G1304700 Malus domestica HOM05D007489 ORTHO05D008037 7.9e-25 120.2 169 48.5
DCAR_007972 Daucus carota HOM05D007489 ORTHO05D008037 1.8e-24 119.0 111 56.8
Glyma.13G171550 Glycine max HOM05D007489 ORTHO05D008037 3.0e-24 118.2 164 45.7
Nitab4.5_0000376g0220 Nicotiana tabacum HOM05D007489 ORTHO05D008037 3.0e-24 118.2 825 24.0
HPP92_008016 Vanilla planifolia HOM05D007489 ORTHO05D008037 1.1e-23 116.3 809 24.4
Solyc02g077210.1 Solanum lycopersicum HOM05D007489 ORTHO05D008037 1.5e-23 115.9 215 37.2
AUR62031141 Chenopodium quinoa HOM05D007489 ORTHO05D008037 2.5e-23 115.2 787 25.0
Ciclev10017982m.g Citrus clementina HOM05D007489 ORTHO05D008037 5.6e-23 114.0 151 48.3
MD05G1304800 Malus domestica HOM05D007489 ORTHO05D008037 7.4e-23 113.6 526 29.7
Peaxi162Scf00223g01419 Petunia axillaris HOM05D007489 ORTHO05D008037 2.1e-22 112.1 291 34.4
SGA_v2.0_scaffold66G22379 Striga asiatica HOM05D007489 ORTHO05D008037 3.7e-22 111.3 867 23.1
HPP92_007965 Vanilla planifolia HOM05D007489 ORTHO05D008037 1.3e-19 102.8 798 23.3
Glyma.13G171600 Glycine max HOM05D007489 ORTHO05D008037 2.2e-19 102.1 147 47.6
PSO339G5948 Papaver somniferum HOM05D007489 ORTHO05D008037 2.2e-19 102.1 295 34.6
SEGI_30603 Sequoiadendron giganteum HOM05D007489 ORTHO05D008037 2.2e-19 102.1 152 40.8
Peaxi162Scf00223g01422 Petunia axillaris HOM05D007489 ORTHO05D008037 3.8e-19 101.3 95 57.9
unitig_0.g132 Utricularia gibba HOM05D007489 ORTHO05D008037 4.9e-19 100.9 192 37.0
Aqoxy534s001 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 4.6e-17 94.4 116 44.8
arahy.Tifrunner.gnm1.ann1.8IS92U Arachis hypogaea HOM05D007489 ORTHO05D008037 2.6e-12 78.6 65 63.1
QL05p044176 Quercus lobata HOM05D007489 ORTHO05D008037 2.2e-11 75.5 154 40.3
Ah.10g026690 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.5e-11 73.6 264 29.2
SalBow1G4805 Salvia bowleyana HOM05D007489 ORTHO05D008037 8.5e-11 73.6 80 45.0
SalBow2G2687 Salvia bowleyana HOM05D007489 ORTHO05D008037 1.1e-10 73.2 76 46.1
SMO340G0226 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 5.7e-07 60.8 52 55.8
SMO356G0683 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 7.4e-07 60.5 52 55.8
Eucgr.D00548 Eucalyptus grandis HOM05D007489 ORTHO05D008037 1.7e-06 59.3 34 82.4


User provided reference genes

Program Settings