Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 3.2e-237 824.7 415 100.0
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 6.2e-209 730.7 415 87.7
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 5.8e-207 724.2 415 86.0
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.7e-206 722.6 404 86.9
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 5.5e-205 717.6 405 84.7
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 3.9e-203 711.4 415 84.6
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 6.7e-203 710.7 415 83.9
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 8.7e-203 710.3 403 85.6
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.2e-199 699.9 415 82.9
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 3.4e-199 698.4 415 82.2
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 1.6e-196 689.5 416 80.8
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.5e-196 688.3 453 76.4
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 1.0e-195 686.8 406 82.0
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 1.0e-195 686.8 407 80.8
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 1.5e-194 682.9 403 82.1
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 1.5e-194 682.9 415 81.7
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 1.9e-194 682.6 414 80.4
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 3.3e-194 681.8 404 80.9
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 7.4e-194 680.6 415 81.2
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 9.6e-194 680.2 406 81.5
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 1.6e-193 679.5 404 82.7
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.6e-193 679.5 412 80.1
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 1.6e-193 679.5 412 80.1
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 2.1e-193 679.1 404 82.7
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 2.1e-193 679.1 414 79.7
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 1.4e-192 676.4 457 74.4
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 1.8e-192 676.0 406 81.3
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 2.4e-192 675.6 403 81.4
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 4.1e-192 674.9 416 80.0
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 5.3e-192 674.5 415 79.5
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 6.9e-192 674.1 403 80.1
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 1.2e-191 673.3 415 81.0
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 1.5e-191 672.9 415 79.3
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 1.5e-191 672.9 415 79.5
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 2.0e-191 672.5 415 77.6
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 2.6e-191 672.2 402 80.1
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 3.4e-191 671.8 415 81.4
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 3.8e-190 668.3 405 80.2
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 5.0e-190 667.9 404 80.2
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 6.5e-190 667.5 401 79.8
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 1.1e-189 666.8 415 77.8
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.9e-189 666.0 425 78.1
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 2.5e-189 665.6 404 79.7
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 1.6e-188 662.9 415 77.6
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 7.9e-188 660.6 435 76.1
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 7.9e-188 660.6 404 79.2
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 3.0e-187 658.7 404 78.5
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 3.0e-187 658.7 415 78.1
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 6.7e-187 657.5 404 78.7
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 6.7e-187 657.5 404 78.7
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 8.7e-187 657.1 404 78.0
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 9.7e-186 653.7 415 76.4
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 2.2e-185 652.5 411 77.1
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 3.7e-185 651.7 403 78.7
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 1.1e-184 650.2 432 73.4
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 1.4e-184 649.8 409 78.0
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 2.4e-184 649.0 401 78.3
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 3.1e-184 648.7 415 76.4
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 9.0e-184 647.1 464 71.3
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 9.0e-184 647.1 403 77.4
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 1.2e-183 646.7 430 74.9
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 3.4e-183 645.2 404 77.2
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 4.5e-183 644.8 367 85.3
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 4.5e-183 644.8 426 75.4
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 4.5e-183 644.8 405 77.5
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 7.7e-183 644.0 405 77.8
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.0e-182 643.7 407 76.4
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 1.7e-182 642.9 407 76.4
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 1.7e-182 642.9 404 75.5
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 2.9e-182 642.1 410 78.5
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 1.9e-181 639.4 407 76.4
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 1.2e-180 636.7 410 78.0
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 2.7e-180 635.6 407 74.7
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 2.3e-179 632.5 404 75.5
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 2.3e-179 632.5 402 75.1
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 2.3e-179 632.5 404 77.2
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 2.3e-179 632.5 405 77.8
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 2.3e-179 632.5 405 77.8
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 8.8e-179 630.6 404 74.5
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 2.0e-178 629.4 403 76.7
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 5.7e-178 627.9 403 75.9
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 7.4e-178 627.5 402 74.6
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 9.7e-178 627.1 401 75.1
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 1.3e-177 626.7 408 74.3
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 3.7e-177 625.2 389 77.6
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 3.7e-177 625.2 408 74.3
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 6.3e-177 624.4 416 76.0
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 8.2e-177 624.0 393 76.3
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 1.1e-176 623.6 404 74.3
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 1.1e-176 623.6 404 74.3
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.1e-176 623.6 407 73.7
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 3.1e-176 622.1 398 75.1
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 7.7e-175 617.5 404 73.8
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 3.8e-174 615.1 413 73.6
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 5.0e-174 614.8 438 70.8
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 2.1e-172 609.4 418 71.5
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 1.5e-170 603.2 425 70.4
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 5.7e-170 601.3 402 73.1
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 9.7e-170 600.5 435 69.2
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 1.3e-169 600.1 424 70.5
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 2.8e-169 599.0 494 63.4
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 4.8e-169 598.2 403 73.2
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 4.8e-169 598.2 416 72.4
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 2.4e-168 595.9 411 70.3
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 9.1e-168 594.0 402 72.1
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 1.6e-167 593.2 419 70.9
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 7.2e-165 584.3 390 73.1
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 8.0e-164 580.9 350 80.0
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 3.7e-161 572.0 350 78.3
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 6.3e-161 571.2 413 71.7
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 6.3e-161 571.2 403 70.7
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 7.0e-160 567.8 360 75.6
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 2.2e-158 562.8 368 73.9
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 8.5e-158 560.8 401 68.8
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 3.6e-156 555.4 402 71.1
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 1.0e-155 553.9 415 69.6
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 4.1e-144 515.4 389 67.6
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 1.0e-142 510.8 415 59.3
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 2.3e-142 509.6 312 77.9
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 1.1e-141 507.3 417 59.2
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 7.0e-136 488.0 400 59.2
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 1.8e-131 473.4 413 58.4
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 4.1e-128 462.2 402 58.5
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 8.9e-123 444.5 369 63.7
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 3.0e-118 429.5 366 62.0
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 1.1e-109 401.0 250 77.6
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 1.4e-107 394.0 272 73.5
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 8.9e-107 391.3 410 49.3
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 3.2e-104 382.9 255 74.5
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.3e-102 377.5 375 57.6
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 3.9e-102 375.9 409 50.6
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 2.2e-97 360.1 215 80.0
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 1.0e-94 351.3 203 81.3
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 3.9e-94 349.4 449 43.9
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 1.9e-93 347.1 405 48.6
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 8.1e-92 341.7 202 80.2
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.5e-88 328.9 416 47.4
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 1.3e-78 297.7 453 38.9
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.2e-71 274.6 417 45.1
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 4.3e-69 266.2 374 43.6
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 1.4e-67 261.2 158 77.8
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 2.6e-66 256.9 189 73.0
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.7e-65 254.2 434 39.4
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 1.6e-63 247.7 153 74.5
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 9.7e-61 238.4 254 52.4
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 1.7e-60 237.7 181 66.3
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.4e-59 233.8 339 44.5
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 2.6e-58 230.3 194 62.9
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 4.2e-56 223.0 222 58.1
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.3e-49 201.4 123 77.2
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 9.4e-48 195.3 146 67.8
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 4.4e-37 159.8 151 55.6
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 6.8e-30 136.0 276 33.7
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 4.4e-29 133.3 85 72.9
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 1.1e-24 118.6 76 73.7
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 3.3e-24 117.1 76 73.7
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 3.3e-24 117.1 308 27.9
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.6e-23 114.8 103 55.3
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 1.4e-22 111.7 67 73.1
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 1.1e-19 102.1 57 80.7
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 3.2e-19 100.5 67 71.6
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 6.8e-14 82.8 55 78.2
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 2.6e-13 80.9 56 71.4
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.7e-12 78.2 47 72.3
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 6.4e-12 76.3 240 29.6
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 8.3e-12 75.9 47 68.1
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 7.8e-10 69.3 238 30.7
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 1.7e-09 68.2 242 27.3
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 2.3e-09 67.8 41 65.9
Oeu008350.1 Olea europaea HOM05D000783 ORTHO05D000705 1.1e-08 65.5 201 27.4
Oeu048326.1 Olea europaea HOM05D000783 ORTHO05D000705 1.5e-08 65.1 198 27.3
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 2.5e-08 64.3 114 34.2
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 1.6e-07 61.6 42 66.7
SGA_v2.0_scaffold1G00349 Striga asiatica HOM05D000783 ORTHO05D000705 2.1e-07 61.2 201 25.9
MSTRG.21645 Avicennia marina HOM05D000783 ORTHO05D000705 2.8e-07 60.8 202 27.7
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 2.8e-07 60.8 53 56.6
RcHm_v2.0_Chr3g0486691 Rosa chinensis HOM05D004141 ORTHO05D347679 4.7e-07 60.1 38 78.9
ECA248G0502 Erigeron canadensis HOM05D000783 ORTHO05D000705 8.1e-07 59.3 213 25.8
TWI53G1695 Tripterygium wilfordii HOM05D000783 ORTHO05D000705 1.8e-06 58.2 159 25.8
ATR0807G093 Amborella trichopoda HOM05D000783 ORTHO05D000705 2.3e-06 57.8 159 25.2
CAN.G472.28 Capsicum annuum HOM05D000783 ORTHO05D000705 2.3e-06 57.8 202 25.2
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 3.1e-06 57.4 129 34.1
Peaxi162Scf00001g00369 Petunia axillaris HOM05D000783 ORTHO05D000705 5.2e-06 56.6 223 23.8


User provided reference genes

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