Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.1e-231 806.2 389 100.0
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.9e-204 715.7 386 88.1
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 7.9e-190 667.2 386 82.1
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 6.3e-187 657.5 389 81.0
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 2.9e-184 648.7 386 80.1
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.8e-184 648.3 386 79.8
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 2.1e-182 642.5 386 79.8
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 7.4e-180 634.0 386 79.5
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 2.6e-177 625.5 388 77.6
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.3e-176 623.2 388 77.6
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 5.0e-176 621.3 389 77.9
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.2e-174 616.7 387 77.8
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 2.3e-173 612.5 390 75.6
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 3.3e-172 608.6 394 74.4
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 2.2e-171 605.9 391 73.7
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 8.2e-171 604.0 386 75.4
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 3.1e-170 602.1 388 74.5
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 9.1e-170 600.5 389 74.8
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.6e-169 599.7 394 73.9
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 2.0e-169 599.4 389 73.5
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.5e-167 593.2 386 72.8
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.2e-167 592.0 387 72.9
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.2e-167 592.0 390 72.8
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 7.2e-167 590.9 396 72.2
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 7.2e-167 590.9 393 72.3
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 1.2e-166 590.1 389 72.2
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 2.3e-165 585.9 392 72.7
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 6.8e-165 584.3 388 71.9
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.2e-164 583.6 391 72.1
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 2.0e-164 582.8 390 72.8
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 5.7e-164 581.3 388 72.7
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 7.5e-164 580.9 392 71.7
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 2.2e-163 579.3 390 72.1
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 6.3e-163 577.8 392 73.2
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 6.3e-163 577.8 412 68.2
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 6.3e-163 577.8 388 71.9
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 8.3e-163 577.4 395 71.1
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.1e-162 577.0 391 71.9
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.4e-162 576.6 391 72.1
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 4.1e-162 575.1 430 66.3
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 5.3e-162 574.7 397 71.5
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 5.3e-162 574.7 430 66.3
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 1.2e-161 573.5 390 72.3
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.7e-161 572.4 391 71.1
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.9e-161 571.2 388 71.4
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.0e-160 570.5 430 66.3
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.7e-160 569.7 389 71.7
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 2.2e-160 569.3 430 66.0
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.2e-160 569.3 391 71.1
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 5.0e-160 568.2 432 65.3
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.1e-159 567.0 389 70.4
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.9e-159 566.2 390 72.3
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.9e-159 566.2 389 71.5
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.2e-159 565.1 389 71.7
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 5.5e-159 564.7 388 71.6
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 5.5e-159 564.7 400 68.8
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 5.5e-159 564.7 391 72.1
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-158 563.1 389 71.7
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 2.7e-158 562.4 390 70.0
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 6.1e-158 561.2 392 70.7
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 6.1e-158 561.2 387 69.0
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 8.0e-158 560.8 388 69.6
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 3.0e-157 558.9 391 70.8
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 4.0e-157 558.5 457 61.1
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 2.0e-156 556.2 391 71.6
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 1.7e-155 553.1 391 71.4
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 2.8e-155 552.4 391 68.8
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 4.8e-155 551.6 431 64.5
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 4.8e-155 551.6 438 64.2
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 1.4e-154 550.1 395 70.4
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 7.0e-154 547.7 395 70.4
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 1.2e-153 547.0 439 63.3
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.6e-153 546.6 390 68.7
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.7e-153 545.8 390 68.2
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 3.8e-152 542.0 386 68.4
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.1e-151 540.4 430 65.6
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.1e-151 540.4 432 65.3
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.9e-151 539.7 394 67.8
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.5e-151 539.3 441 63.3
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 2.5e-151 539.3 391 67.8
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 2.5e-151 539.3 397 68.8
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 4.2e-151 538.5 397 68.8
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.5e-151 538.1 410 67.8
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 5.2e-149 531.6 453 60.0
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 2.6e-148 529.3 395 68.6
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 8.3e-147 524.2 390 66.9
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.4e-146 523.5 339 74.9
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 2.5e-143 512.7 388 65.2
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 4.7e-142 508.4 388 66.0
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.8e-141 506.5 394 62.7
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 3.1e-141 505.8 390 63.3
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.5e-140 503.4 393 64.6
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 2.0e-140 503.1 390 63.3
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.4e-140 501.9 392 63.5
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 1.3e-139 500.4 394 65.5
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.3e-139 500.4 393 63.1
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 6.4e-139 498.0 396 63.6
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 3.5e-137 492.3 388 62.6
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.5e-137 492.3 389 63.2
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 4.6e-137 491.9 398 62.6
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.0e-136 490.7 389 62.0
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.7e-136 490.0 389 62.0
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 3.9e-136 488.8 389 61.4
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 8.6e-136 487.6 359 66.0
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 3.3e-135 485.7 390 64.4
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.6e-135 485.0 392 63.0
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 1.2e-134 483.8 388 60.8
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 2.8e-134 482.6 388 60.8
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 3.6e-134 482.3 392 62.8
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.7e-134 481.9 389 62.5
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.4e-133 480.3 389 60.4
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 5.2e-133 478.4 392 61.0
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.9e-130 469.9 388 60.6
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 3.2e-130 469.2 388 60.3
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 5.4e-130 468.4 394 60.7
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 9.2e-130 467.6 388 60.3
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.7e-128 463.4 391 59.8
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 5.1e-128 461.8 391 59.6
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 9.5e-127 457.6 391 59.3
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 9.5e-127 457.6 391 59.3
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 2.0e-124 449.9 412 57.3
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 4.9e-123 445.3 391 58.6
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.7e-120 436.8 412 56.3
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.1e-120 435.3 295 70.2
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.2e-118 430.6 405 52.6
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 8.4e-115 417.9 349 61.0
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 5.1e-112 408.7 307 65.1
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 8.1e-110 401.4 423 49.6
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.8e-107 392.5 296 68.2
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 2.3e-104 383.3 389 52.4
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 4.3e-103 379.0 204 85.8
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 3.5e-97 359.4 196 85.2
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.3e-96 357.5 201 82.1
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 1.3e-94 350.9 441 45.4
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.5e-92 344.0 200 76.0
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.8e-91 339.3 468 43.2
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.0e-88 331.3 377 49.6
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.8e-88 330.5 220 68.2
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.3e-80 304.3 453 40.0
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 8.7e-80 301.6 207 65.2
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 9.7e-79 298.1 202 66.8
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 9.7e-79 298.1 215 63.3
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.7e-75 287.3 390 42.6
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 6.1e-73 278.9 428 41.4
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 7.2e-66 255.4 188 67.6
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.9e-44 182.6 140 63.6
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.7e-43 181.0 191 55.0
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 5.7e-39 166.0 136 62.5
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.8e-38 163.7 123 67.5
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.9e-38 162.9 178 49.4
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 8.3e-38 162.2 188 50.0
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.4e-37 159.5 94 78.7
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 5.4e-37 159.5 108 70.4
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.0e-36 157.5 92 79.3
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.0e-36 157.5 94 77.7
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-35 154.8 94 76.6
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 1.5e-31 141.4 153 50.3
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 1.0e-27 128.6 165 41.8
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 8.0e-25 119.0 118 53.4
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 8.0e-25 119.0 118 53.4
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 8.0e-25 119.0 118 53.4
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 9.5e-18 95.5 66 68.2
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.0e-11 75.5 45 73.3
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 6.6e-11 72.8 129 40.3


User provided reference genes

Program Settings