Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1852.4 924 100.0
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1610.1 925 86.4
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1564.7 926 84.0
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1548.9 928 82.5
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1544.6 924 82.9
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1544.3 928 82.3
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1541.9 924 82.7
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1536.2 924 83.4
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1526.9 929 81.8
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1514.6 925 80.5
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1510.4 938 80.4
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1497.3 926 80.7
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1495.7 925 80.0
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1491.5 924 80.1
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1490.7 926 80.2
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1487.6 929 80.5
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1486.9 926 79.8
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1485.3 933 79.4
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1475.7 926 79.3
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1474.9 926 78.6
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1472.2 969 76.4
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1471.4 927 79.6
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1466.1 928 79.8
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1465.3 933 78.7
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1463.4 926 78.9
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1459.9 924 77.7
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1456.8 966 76.3
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1453.3 925 77.6
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1453.3 925 77.5
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1452.2 926 78.4
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1451.4 925 78.2
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1450.6 928 78.6
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1442.9 925 77.7
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1441.4 940 77.0
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1436.4 925 77.4
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1432.9 924 77.4
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1432.2 925 77.3
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1431.4 925 77.2
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1426.8 926 75.8
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1424.5 933 75.9
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1414.4 941 76.8
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1413.3 1184 63.9
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1406.3 1001 71.3
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1398.6 955 73.7
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1398.3 925 75.8
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1394.8 928 75.9
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1391.7 927 75.8
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1390.2 923 74.9
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1389.0 923 75.1
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1387.5 927 75.7
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1385.9 925 73.9
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1385.5 926 75.2
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1385.2 925 74.3
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1383.2 928 73.6
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1382.9 925 73.8
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1382.1 923 74.5
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1380.9 930 73.3
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1380.9 924 73.6
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1378.2 923 75.0
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1377.8 927 73.1
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1375.1 908 75.8
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1373.2 931 72.9
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1372.1 927 73.0
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1370.1 923 73.9
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1369.4 925 73.4
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1367.8 923 74.3
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1367.1 925 73.3
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1366.7 923 73.7
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1366.7 925 73.4
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1363.2 939 73.2
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1362.4 926 72.5
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1362.4 926 73.1
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1360.9 926 72.6
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1360.1 925 74.5
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1358.6 926 72.4
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1358.2 927 72.6
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1357.8 926 72.5
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1357.8 935 72.4
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1357.4 924 72.3
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1356.7 935 73.0
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1355.9 932 72.0
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1355.5 923 72.3
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1355.5 927 74.5
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1352.4 925 74.3
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1348.2 925 71.8
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1347.8 934 71.9
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1347.0 927 72.1
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1347.0 923 73.8
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1343.6 926 71.7
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1338.9 910 73.8
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1338.2 926 71.4
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1331.2 926 73.7
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1321.6 927 72.5
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1319.3 923 72.7
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1286.9 928 70.3
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1264.6 830 75.3
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1258.4 925 68.3
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1239.6 906 69.8
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1219.1 918 66.7
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1203.0 778 76.0
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1182.5 865 69.0
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1176.8 928 64.0
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1102.0 742 73.6
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1088.6 729 76.3
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 3.0e-296 1021.9 674 76.4
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 6.7e-288 994.2 732 71.4
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 1.9e-282 976.1 916 57.4
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 2.2e-270 936.0 930 55.9
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 2.8e-257 892.5 1060 47.2
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 5.8e-247 858.2 521 81.0
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 5.0e-243 845.1 1029 46.1
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 1.3e-209 734.2 455 80.9
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 2.4e-200 703.4 443 81.3
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 2.8e-185 653.3 819 45.7
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.3e-174 617.8 1305 31.9
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 1.1e-168 598.2 411 72.5
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.4e-168 597.0 489 62.0
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 1.5e-114 418.3 604 43.4
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 5.5e-88 330.1 256 63.7
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.9e-81 307.0 202 75.2
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.9e-80 305.1 229 69.4
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.8e-78 298.5 225 69.3
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.6e-76 292.0 263 56.7
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 3.2e-72 277.7 260 57.3
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 3.2e-72 277.7 260 57.3
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 3.2e-72 277.7 260 57.3
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.6e-71 275.4 451 36.8
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.6e-68 265.4 181 70.2
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 4.1e-67 260.8 235 62.6
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 1.7e-65 255.4 202 63.9
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.2e-65 255.0 166 76.5
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 3.7e-60 237.7 157 75.2
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.4e-56 225.7 132 81.1
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.3e-54 218.4 145 72.4
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 1.1e-48 199.5 213 52.6
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.1e-48 199.5 109 86.2
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.6e-47 195.7 133 68.4
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.1e-47 195.3 109 85.3
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.0e-46 191.0 109 84.4
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.0e-46 191.0 109 84.4
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.8e-44 184.9 109 82.6
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 4.5e-42 177.6 111 76.6
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.0e-41 176.4 120 74.2
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 1.1e-40 172.9 124 69.4
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.6e-31 142.5 124 59.7
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 2.4e-27 128.6 89 70.8
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 4.1e-27 127.9 110 61.8
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 3.5e-18 98.2 87 58.6
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 1.3e-17 96.3 62 83.9
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.0e-17 94.4 52 78.8
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 8.6e-17 93.6 57 71.9
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 1.2e-13 83.2 45 84.4
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 6.4e-12 77.4 75 52.0
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.5e-08 66.2 46 69.6
ATR0693G286 Amborella trichopoda HOM05D004029 ORTHO05D004613 7.3e-08 63.9 40 72.5
Sopen07g031630 Solanum pennellii HOM05D004029 ORTHO05D004613 2.8e-07 62.0 66 54.5
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.1e-06 60.1 46 54.3


User provided reference genes

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