Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 1.7e-260 902.1 456 100.0
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.3e-143 513.8 487 60.0
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 3.2e-105 386.3 446 51.6
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 2.6e-99 366.7 407 52.1
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 2.4e-97 360.1 475 46.3
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 3.2e-97 359.8 455 47.9
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 4.1e-97 359.4 455 48.1
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 1.6e-96 357.5 440 48.0
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 4.6e-96 355.9 439 48.7
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 5.1e-95 352.4 483 46.6
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 1.1e-94 351.3 428 50.0
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.5e-94 350.9 444 47.7
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.9e-94 350.5 441 48.3
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.8e-92 344.0 452 45.6
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 4.9e-90 335.9 445 47.2
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 1.1e-89 334.7 452 45.4
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 5.4e-89 332.4 443 46.3
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 7.1e-89 332.0 568 39.8
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 9.2e-89 331.6 530 41.9
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 4.6e-88 329.3 427 48.5
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 2.3e-87 327.0 449 46.3
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 3.0e-87 326.6 432 45.8
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 8.7e-87 325.1 438 46.8
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 5.6e-86 322.4 400 45.2
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 1.6e-85 320.9 467 44.1
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 2.1e-85 320.5 427 45.9
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 3.6e-85 319.7 420 46.4
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 3.1e-84 316.6 421 47.7
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 3.4e-83 313.2 421 44.4
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 3.4e-83 313.2 416 45.4
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 3.4e-83 313.2 409 48.7
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 3.4e-83 313.2 421 45.1
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 7.6e-83 312.0 407 46.9
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 2.2e-82 310.5 445 45.4
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 6.4e-82 308.9 441 42.9
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 4.2e-81 306.2 444 45.3
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 4.2e-81 306.2 396 47.2
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 5.4e-81 305.8 426 45.5
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 7.1e-81 305.4 424 45.0
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 9.3e-81 305.1 435 46.0
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 9.3e-81 305.1 406 45.1
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 2.1e-80 303.9 444 44.8
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 4.6e-80 302.8 460 43.9
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.0e-79 301.6 406 46.1
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 3.9e-79 299.7 408 46.3
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 5.1e-79 299.3 439 44.4
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 6.6e-79 298.9 414 46.1
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 8.7e-79 298.5 434 43.8
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 1.5e-78 297.7 423 44.4
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 7.3e-78 295.4 424 46.7
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 1.3e-77 294.7 399 44.9
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 8.1e-77 292.0 398 43.2
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.0e-75 287.3 421 43.7
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 2.0e-75 287.3 413 44.1
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 2.6e-75 287.0 447 41.8
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 2.6e-75 287.0 398 45.7
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 3.4e-75 286.6 421 43.2
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.5e-75 286.2 401 44.4
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 4.5e-75 286.2 414 44.2
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 1.3e-74 284.6 408 42.9
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 2.9e-74 283.5 329 50.8
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 1.1e-73 281.6 410 44.1
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.1e-73 281.6 414 40.8
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 7.1e-73 278.9 425 42.6
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 9.3e-73 278.5 414 41.3
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 1.2e-72 278.1 405 43.2
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.6e-72 277.7 412 41.3
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.6e-72 277.7 393 46.6
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 5.1e-71 272.7 424 42.2
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 1.5e-70 271.2 402 43.0
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 2.5e-70 270.4 430 41.2
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 7.4e-70 268.9 413 42.9
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 4.8e-69 266.2 415 41.2
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 8.1e-69 265.4 389 42.9
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 1.8e-68 264.2 482 35.9
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.1e-68 263.5 397 42.1
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 4.0e-68 263.1 440 40.2
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 4.0e-68 263.1 411 41.4
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 5.3e-68 262.7 403 42.2
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 6.9e-68 262.3 411 41.8
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 9.0e-68 261.9 411 42.1
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.5e-67 261.2 422 44.1
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.5e-67 261.2 445 40.7
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 6.4e-66 255.8 401 41.9
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 1.1e-65 255.0 401 41.4
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 1.1e-65 255.0 401 41.4
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 9.3e-65 251.9 477 35.8
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 2.7e-64 250.4 410 40.7
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 8.2e-61 238.8 400 39.8
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 3.1e-60 236.9 403 38.0
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.0e-60 236.5 401 39.9
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 9.0e-60 235.3 375 40.0
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.7e-55 219.2 400 38.0
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 8.7e-55 218.8 190 60.5
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 8.7e-55 218.8 189 61.4
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.1e-54 218.4 200 56.5
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 7.7e-51 205.7 350 34.9
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 1.9e-49 201.1 184 52.2
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.7e-47 192.6 336 39.3
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.5e-46 190.7 382 36.4
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.7e-45 188.0 193 52.3
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.1e-44 183.3 347 37.5
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 1.5e-43 181.4 258 42.2
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 2.5e-41 174.1 401 31.2
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 4.7e-40 169.9 156 56.4
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 6.1e-32 142.9 142 55.6
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 6.1e-32 142.9 304 34.2
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 1.8e-28 131.3 393 30.5
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.3e-26 125.2 89 68.5
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 4.2e-25 120.2 77 76.6
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 7.2e-25 119.4 399 26.8
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 1.6e-24 118.2 305 32.5
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 2.7e-24 117.5 397 27.0
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 2.3e-23 114.4 109 57.8
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.5e-22 111.7 120 49.2
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 2.6e-22 110.9 90 58.9
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 2.0e-19 101.3 136 40.4
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.5e-17 95.1 80 53.8
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 2.5e-17 94.4 65 69.2
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 5.2e-15 86.7 74 59.5


User provided reference genes

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