Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.2e-50 203.0 106 100.0
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.9e-33 144.4 104 74.0
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.8e-32 142.5 104 70.2
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.6e-31 139.4 104 67.3
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.0e-30 136.7 109 68.8
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 7.3e-29 130.6 105 63.8
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 3.6e-28 128.3 104 70.2
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 8.0e-28 127.1 111 60.4
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.4e-27 126.3 105 62.9
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 8.9e-27 123.6 106 62.3
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 8.9e-27 123.6 104 61.5
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 2.6e-26 122.1 99 66.7
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 4.4e-26 121.3 106 63.2
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 7.5e-26 120.6 105 61.0
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.2e-25 119.0 107 61.7
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 2.9e-25 118.6 105 56.2
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.7e-25 118.2 105 62.9
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.7e-25 118.2 93 64.5
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.7e-25 118.2 104 61.5
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 4.9e-25 117.9 99 65.7
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 6.4e-25 117.5 105 60.0
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 8.3e-25 117.1 104 57.7
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 8.3e-25 117.1 93 63.4
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.4e-24 116.3 99 64.6
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 2.4e-24 115.5 84 69.0
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.4e-24 115.5 97 63.9
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 3.2e-24 115.2 103 57.3
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.2e-24 115.2 97 61.9
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 3.2e-24 115.2 89 68.5
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.2e-24 115.2 94 60.6
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.1e-24 114.8 98 63.3
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 7.0e-24 114.0 106 55.7
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.0e-24 114.0 93 62.4
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 1.2e-23 113.2 105 52.4
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.6e-23 112.8 109 57.8
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.6e-23 112.8 109 57.8
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 2.0e-23 112.5 89 67.4
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 3.5e-23 111.7 106 53.8
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 4.6e-23 111.3 106 55.7
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 4.6e-23 111.3 106 55.7
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 6.0e-23 110.9 89 66.3
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 7.8e-23 110.5 101 58.4
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.7e-22 109.4 102 58.8
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.7e-22 109.4 93 58.1
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.7e-22 109.4 93 58.1
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.0e-22 108.6 77 74.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.0e-22 108.6 90 63.3
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 3.9e-22 108.2 104 57.7
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 3.9e-22 108.2 84 66.7
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 8.6e-22 107.1 105 53.3
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.1e-21 106.7 99 59.6
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.1e-21 106.7 97 57.7
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.5e-21 106.3 90 62.2
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.9e-21 105.9 94 59.6
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.3e-21 105.1 99 54.5
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 3.3e-21 105.1 105 51.4
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 9.5e-21 103.6 109 58.7
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.5e-21 103.6 90 58.9
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 9.5e-21 103.6 107 55.1
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 9.5e-21 103.6 106 50.9
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.2e-20 103.2 99 53.5
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 2.8e-20 102.1 101 54.5
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 3.6e-20 101.7 85 62.4
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 3.6e-20 101.7 85 62.4
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.6e-20 101.7 101 54.5
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.7e-20 101.3 83 61.4
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.1e-19 100.1 106 50.9
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.1e-19 100.1 87 62.1
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.4e-19 99.8 95 58.9
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.8e-19 99.4 99 52.5
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 1.8e-19 99.4 96 58.3
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 2.3e-19 99.0 108 52.8
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.8e-19 97.4 93 58.1
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 6.8e-19 97.4 93 57.0
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 8.9e-19 97.1 101 56.4
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.5e-18 96.3 91 58.2
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.5e-18 96.3 93 57.0
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 1.5e-18 96.3 92 56.5
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 2.0e-18 95.9 93 55.9
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 3.4e-18 95.1 84 58.3
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 3.4e-18 95.1 95 56.8
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 4.4e-18 94.7 106 54.7
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 1.7e-17 92.8 81 63.0
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 2.2e-17 92.4 86 59.3
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 6.4e-17 90.9 115 47.8
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 6.4e-17 90.9 102 48.0
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 8.3e-17 90.5 106 47.2
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.9e-16 89.4 81 54.3
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 7.1e-16 87.4 101 46.5
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 9.2e-16 87.0 105 43.8
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.2e-15 86.7 111 45.9
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 1.2e-15 86.7 99 49.5
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.2e-15 86.7 97 50.5
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.2e-15 86.7 103 51.5
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 2.7e-15 85.5 97 46.4
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.5e-15 85.1 82 50.0
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 4.6e-15 84.7 103 50.5
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 7.8e-15 84.0 87 51.7
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.0e-14 83.6 81 50.6
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.7e-14 82.8 91 52.7
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.7e-14 82.8 99 48.5
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 2.3e-14 82.4 91 48.4
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 2.3e-14 82.4 101 46.5
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.5e-13 79.7 116 45.7
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 2.5e-13 79.0 63 68.3
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 2.5e-13 79.0 63 68.3
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 5.6e-13 77.8 99 46.5
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 5.6e-13 77.8 67 58.2
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 9.5e-13 77.0 98 46.9
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.2e-12 76.6 99 44.4
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 3.6e-12 75.1 99 47.5
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 3.6e-12 75.1 99 44.4
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 3.6e-12 75.1 99 44.4
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 4.7e-12 74.7 99 46.5
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 4.7e-12 74.7 66 56.1
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 6.2e-12 74.3 99 42.4
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 6.2e-12 74.3 99 42.4
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.1e-11 73.6 98 44.9
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.4e-11 73.2 96 42.7
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 1.8e-11 72.8 112 42.0
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 1.8e-11 72.8 112 42.0
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 2.3e-11 72.4 99 43.4
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 2.3e-11 72.4 99 46.5
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 3.1e-11 72.0 97 46.4
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 5.2e-11 71.2 99 43.4
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 5.2e-11 71.2 99 43.4
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 5.2e-11 71.2 91 44.0
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 8.9e-11 70.5 98 44.9
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.2e-10 70.1 89 46.1
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 1.5e-10 69.7 90 50.0
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 2.0e-10 69.3 99 43.4
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 5.8e-10 67.8 100 42.0
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 7.6e-10 67.4 96 43.8
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 7.6e-10 67.4 115 40.0
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 7.6e-10 67.4 99 42.4
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 7.6e-10 67.4 114 37.7
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 9.9e-10 67.0 105 39.0
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 1.3e-09 66.6 96 41.7
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 2.9e-09 65.5 70 54.3
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.9e-08 62.8 70 48.6
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 1.9e-08 62.8 76 44.7
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 1.9e-08 62.8 76 44.7
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 1.9e-08 62.8 70 47.1
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 1.9e-08 62.8 76 44.7
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 1.9e-08 62.8 70 47.1
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 2.4e-08 62.4 70 45.7
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 2.4e-08 62.4 70 45.7
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 2.4e-08 62.4 70 45.7
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 3.2e-08 62.0 69 47.8
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 5.4e-08 61.2 70 45.7
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 5.4e-08 61.2 76 43.4
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 9.2e-08 60.5 76 44.7
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 9.2e-08 60.5 69 44.9
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 2.1e-07 59.3 76 43.4
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 2.7e-07 58.9 75 41.3
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 3.5e-07 58.5 76 43.4
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 6.0e-07 57.8 76 40.8
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 1.0e-06 57.0 71 43.7
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 1.0e-06 57.0 71 43.7
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 2.3e-06 55.8 76 39.5
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 2.3e-06 55.8 114 31.6
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 2.3e-06 55.8 114 31.6
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 2.3e-06 55.8 114 31.6
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 3.0e-06 55.5 67 46.3
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.1e-06 54.7 65 46.2
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 5.1e-06 54.7 75 46.7


User provided reference genes

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