Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 0.0e+00 1327.4 633 100.0
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 0.0e+00 1143.3 633 83.3
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 0.0e+00 1140.6 633 83.9
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 0.0e+00 1137.1 633 84.0
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 0.0e+00 1136.3 633 82.9
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1134.0 632 82.9
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1134.0 632 82.9
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 0.0e+00 1128.2 609 86.5
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 0.0e+00 1125.2 633 82.3
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1119.4 633 81.4
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 0.0e+00 1117.8 633 81.4
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 0.0e+00 1117.1 635 81.9
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1115.5 633 81.2
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 0.0e+00 1114.8 633 82.5
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 0.0e+00 1108.6 633 80.7
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 0.0e+00 1108.2 633 80.6
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 0.0e+00 1107.8 633 81.8
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 0.0e+00 1100.9 633 81.2
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 0.0e+00 1086.2 636 79.1
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 0.0e+00 1081.6 636 79.2
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1080.5 635 79.7
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1076.6 635 79.5
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 2.2e-311 1071.6 635 78.9
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 2.5e-310 1068.1 635 78.7
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 1.1e-308 1062.8 641 76.8
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.4e-308 1062.4 591 82.4
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 4.4e-307 1057.4 633 79.0
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.7e-306 1055.4 635 77.3
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 3.2e-305 1051.2 633 76.0
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 5.4e-305 1050.4 635 76.5
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 6.0e-304 1047.0 634 77.4
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 5.1e-303 1043.9 633 77.6
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 9.6e-302 1039.6 636 77.5
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 4.7e-301 1037.3 635 77.2
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.4e-300 1035.0 633 74.6
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 6.8e-300 1033.5 636 75.5
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 3.4e-299 1031.2 633 74.1
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 3.4e-299 1031.2 634 75.1
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 3.0e-295 1018.1 633 73.9
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 4.6e-288 994.2 605 76.9
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 2.1e-285 985.3 633 73.3
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 9.3e-281 969.9 634 70.7
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 1.3e-279 966.1 622 70.9
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 4.2e-265 917.9 644 67.9
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 7.2e-257 890.6 534 77.3
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 9.7e-254 880.2 634 65.0
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 2.3e-247 859.0 635 62.7
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 7.4e-246 854.0 636 63.1
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 2.2e-245 852.4 638 63.3
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 3.1e-244 848.6 635 62.4
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 3.1e-244 848.6 635 62.4
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 9.1e-244 847.0 636 62.3
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 2.5e-241 839.0 637 61.7
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 5.3e-236 821.2 545 69.0
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 8.5e-234 813.9 639 59.8
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 8.3e-229 797.3 636 59.7
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 1.2e-227 793.5 636 59.6
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.2e-192 677.2 640 53.1
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 2.7e-187 659.4 382 81.4
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 4.6e-187 658.7 641 49.3
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 8.9e-183 644.4 643 49.6
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 5.3e-143 512.3 303 78.9
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 3.7e-136 489.6 739 38.4
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 1.7e-117 427.6 275 74.9
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 9.4e-116 421.8 271 73.4
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 5.4e-111 406.0 242 78.5
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 4.5e-110 402.9 241 74.3
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 4.4e-105 386.3 242 74.0
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 3.7e-104 383.3 272 66.2
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 3.7e-104 383.3 272 66.2
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 2.5e-100 370.5 224 78.6
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 1.6e-99 367.9 256 67.2
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 1.0e-98 365.2 252 68.7
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 6.8e-98 362.5 256 66.8
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 1.3e-93 348.2 252 63.5
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 3.7e-88 330.1 255 61.2
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 2.1e-75 287.7 257 59.5
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 1.0e-53 215.7 170 60.0
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 1.5e-52 211.8 130 77.7
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 6.0e-46 189.9 191 55.5
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 1.2e-41 175.6 374 33.2
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.4e-41 174.1 375 30.4
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 3.4e-41 174.1 368 34.0
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.0e-40 172.6 368 32.9
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.7e-40 171.8 381 32.3
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 2.9e-40 171.0 386 31.6
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 1.2e-38 165.6 380 31.8
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 1.6e-38 165.2 380 31.8
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 2.7e-38 164.5 369 32.0
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 2.7e-38 164.5 378 31.2
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 2.7e-38 164.5 369 32.2
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 7.9e-38 162.9 382 30.9
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.3e-37 162.2 377 30.2
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.8e-37 161.8 382 30.9
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.3e-37 161.4 371 31.0
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.3e-37 161.4 376 31.1
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 2.3e-37 161.4 383 31.1
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 3.0e-37 161.0 373 32.4
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 3.9e-37 160.6 378 32.3
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 5.1e-37 160.2 370 33.0
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 8.7e-37 159.5 377 30.8
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 8.7e-37 159.5 377 30.8
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 8.7e-37 159.5 377 30.8
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 8.7e-37 159.5 378 30.4
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 1.1e-36 159.1 394 30.7
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.5e-36 158.7 372 30.4
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 1.5e-36 158.7 376 31.4
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 1.5e-36 158.7 367 31.3
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 1.5e-36 158.7 368 32.1
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.9e-36 158.3 379 30.9
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.3e-36 157.5 373 31.6
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 3.3e-36 157.5 373 31.1
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 4.3e-36 157.1 380 31.6
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 4.3e-36 157.1 365 32.1
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 7.4e-36 156.4 372 30.4
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 7.4e-36 156.4 381 30.2
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 9.7e-36 156.0 402 30.8
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 9.7e-36 156.0 371 32.6
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 2.1e-35 154.8 375 32.0
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.1e-35 154.8 376 31.1
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 4.8e-35 153.7 374 29.9
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 4.8e-35 153.7 372 28.8
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 4.8e-35 153.7 402 29.6
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 6.3e-35 153.3 376 30.9
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 8.2e-35 152.9 379 30.1
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.1e-34 152.5 374 31.0
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 1.4e-34 152.1 378 30.2
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.8e-34 151.8 380 30.8
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 2.4e-34 151.4 371 31.5
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 3.1e-34 151.0 378 31.0
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 3.1e-34 151.0 380 31.6
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 3.1e-34 151.0 376 29.8
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 5.3e-34 150.2 386 29.3
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 6.9e-34 149.8 378 30.4
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.2e-33 149.1 373 31.1
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.5e-33 148.7 396 30.1
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 1.5e-33 148.7 400 29.8
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 2.0e-33 148.3 129 59.7
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 3.4e-33 147.5 372 30.4
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 5.9e-33 146.7 401 31.2
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 1.0e-32 146.0 378 30.4
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 1.0e-32 146.0 375 29.9
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 2.9e-32 144.4 377 30.5
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 2.9e-32 144.4 366 30.1
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.8e-32 144.1 368 28.3
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 8.5e-32 142.9 371 30.5
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 1.9e-31 141.7 377 31.3
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.9e-31 141.7 376 30.1
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 2.5e-31 141.4 367 30.2
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 3.2e-31 141.0 357 30.8
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 5.5e-31 140.2 376 29.8
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 5.5e-31 140.2 349 31.2
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 9.3e-31 139.4 375 29.9
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 9.3e-31 139.4 330 31.2
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.1e-30 138.3 369 30.4
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 3.6e-30 137.5 355 31.0
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 4.6e-30 137.1 316 31.3
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 3.9e-29 134.0 310 32.3
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 6.7e-29 133.3 372 29.6
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.7e-29 133.3 373 31.1
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.7e-29 133.3 361 31.0
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 6.7e-29 133.3 401 29.2
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 8.7e-29 132.9 303 31.7
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 4.3e-28 130.6 419 26.5
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 9.7e-28 129.4 318 30.2
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.2e-27 128.3 240 34.2
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 2.4e-26 124.8 249 33.3
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 2.0e-25 121.7 387 26.6
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 2.0e-25 121.7 334 29.6
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 7.7e-25 119.8 466 25.3
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.3e-24 119.0 152 43.4
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 2.9e-24 117.9 319 30.1
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.4e-23 115.5 354 28.8
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 9.4e-23 112.8 293 26.3
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 6.7e-21 106.7 304 28.6
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 3.3e-20 104.4 254 30.3
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 3.3e-20 104.4 370 26.5
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 4.4e-20 104.0 234 33.8
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 2.4e-18 98.2 225 31.6
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 6.5e-16 90.1 363 26.2
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 3.2e-15 87.8 434 24.9
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 5.5e-15 87.0 158 36.1
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.7e-11 75.5 96 42.7
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 2.2e-11 75.1 216 24.5
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.1e-06 57.0 320 24.1


User provided reference genes

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